Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g18350 Coffea canephora HOM05D003660 ORTHO05D003415 9.9e-50 199.9 108 100.0
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.4e-11 73.2 105 43.8
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 9.1e-11 70.5 108 44.4
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 9.1e-11 70.5 105 41.0
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 9.1e-11 70.5 105 41.0
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.2e-10 70.1 105 38.1
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.6e-10 69.7 104 42.3
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.6e-10 69.7 105 42.9
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 1.3e-09 66.6 108 41.7
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.3e-09 66.6 105 40.0
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.7e-09 66.2 101 44.6
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 2.2e-09 65.9 106 41.5
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 2.2e-09 65.9 106 45.3
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 2.2e-09 65.9 105 37.1
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 2.9e-09 65.5 105 40.0
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 3.8e-09 65.1 105 35.2
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 3.8e-09 65.1 106 40.6
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 3.8e-09 65.1 106 40.6
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 6.5e-09 64.3 105 36.2
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 6.5e-09 64.3 103 39.8
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 6.5e-09 64.3 108 41.7
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 6.5e-09 64.3 105 41.9
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 8.5e-09 63.9 105 41.0
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 8.5e-09 63.9 105 39.0
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 8.5e-09 63.9 108 40.7
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 1.1e-08 63.5 105 41.0
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.5e-08 62.4 105 37.1
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 2.5e-08 62.4 99 35.4
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.2e-08 61.6 105 39.0
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 5.5e-08 61.2 107 39.3
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 5.5e-08 61.2 107 39.3
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 5.5e-08 61.2 105 38.1
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 5.5e-08 61.2 105 37.1
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 5.5e-08 61.2 105 39.0
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 5.5e-08 61.2 105 35.2
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 7.2e-08 60.8 105 35.2
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 7.2e-08 60.8 105 38.1
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 9.4e-08 60.5 105 38.1
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 9.4e-08 60.5 107 34.6
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 1.2e-07 60.1 105 34.3
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 1.6e-07 59.7 105 33.3
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 1.6e-07 59.7 108 38.0
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 1.6e-07 59.7 105 33.3
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 1.6e-07 59.7 103 38.8
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.1e-07 59.3 105 38.1
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.1e-07 59.3 105 38.1
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 2.1e-07 59.3 105 33.3
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 2.1e-07 59.3 59 52.5
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 2.7e-07 58.9 105 36.2
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 2.7e-07 58.9 105 41.0
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 3.6e-07 58.5 107 36.4
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 3.6e-07 58.5 105 34.3
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 4.7e-07 58.2 107 38.3
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 4.7e-07 58.2 107 38.3
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 4.7e-07 58.2 103 35.9
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 4.7e-07 58.2 106 35.8
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 4.7e-07 58.2 97 36.1
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 4.7e-07 58.2 105 33.3
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 6.1e-07 57.8 103 37.9
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 6.1e-07 57.8 99 37.4
BolC9t59818H Brassica oleracea HOM05D008756 ORTHO05D003415 6.1e-07 57.8 99 37.4
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 6.1e-07 57.8 106 34.9
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 6.1e-07 57.8 107 37.4
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 6.1e-07 57.8 107 37.4
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 6.1e-07 57.8 105 34.3
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 8.0e-07 57.4 106 33.0
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 8.0e-07 57.4 105 32.4
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 8.0e-07 57.4 59 52.5
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 8.0e-07 57.4 94 42.6
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 8.0e-07 57.4 122 36.1
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 8.0e-07 57.4 96 36.5
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.0e-06 57.0 105 37.1
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.4e-06 56.6 105 37.1
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 1.4e-06 56.6 105 33.3
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 1.4e-06 56.6 99 37.4
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.8e-06 56.2 105 33.3
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 1.8e-06 56.2 105 32.4
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 1.8e-06 56.2 98 35.7
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 2.3e-06 55.8 107 37.4
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 2.3e-06 55.8 105 36.2
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 2.3e-06 55.8 105 38.1
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.3e-06 55.8 59 50.8
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.3e-06 55.8 59 50.8
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.3e-06 55.8 105 34.3
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 2.3e-06 55.8 106 36.8
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 2.3e-06 55.8 107 34.6
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 3.0e-06 55.5 109 37.6
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 3.0e-06 55.5 94 37.2
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 3.0e-06 55.5 100 39.0
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 4.0e-06 55.1 104 37.5
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 4.0e-06 55.1 105 32.4
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.0e-06 55.1 105 33.3
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 4.0e-06 55.1 92 38.0
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 4.0e-06 55.1 105 34.3
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 4.0e-06 55.1 106 34.9
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 5.2e-06 54.7 105 32.4
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 5.2e-06 54.7 105 32.4
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 5.2e-06 54.7 105 32.4
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 5.2e-06 54.7 107 33.6
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 6.7e-06 54.3 104 37.5
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 6.7e-06 54.3 105 34.3
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 6.7e-06 54.3 105 32.4
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 6.7e-06 54.3 105 36.2
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 8.8e-06 53.9 105 32.4
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 8.8e-06 53.9 106 35.8
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 8.8e-06 53.9 107 36.4
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 8.8e-06 53.9 91 36.3
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 8.8e-06 53.9 91 36.3


User provided reference genes

Program Settings