Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 2.1e-291 1005.0 510 100.0
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 2.0e-185 652.9 512 65.2
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 1.7e-171 606.7 506 60.9
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 2.2e-171 606.3 505 61.6
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 1.4e-170 603.6 504 61.9
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 5.9e-169 598.2 510 60.0
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 7.7e-169 597.8 499 62.7
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 6.5e-168 594.7 500 62.2
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 3.2e-167 592.4 513 61.4
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 7.2e-167 591.3 513 60.4
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 7.2e-167 591.3 500 61.2
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 1.6e-166 590.1 519 60.5
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 2.8e-166 589.3 509 59.9
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.4e-165 587.0 510 62.0
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 1.4e-165 587.0 503 59.8
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 3.0e-165 585.9 500 61.8
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.0e-165 585.5 498 61.6
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 4.0e-165 585.5 503 59.6
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 1.2e-164 583.9 519 59.7
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 2.6e-164 582.8 520 59.8
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.5e-164 581.3 498 61.0
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 4.9e-163 578.6 498 60.2
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 6.3e-163 578.2 498 60.0
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 1.1e-162 577.4 509 59.9
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 1.1e-162 577.4 498 60.2
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 1.8e-162 576.6 501 59.1
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.3e-160 570.5 488 60.5
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 1.7e-160 570.1 516 57.6
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 1.7e-160 570.1 537 59.0
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 2.9e-160 569.3 499 59.9
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 5.0e-160 568.5 503 57.9
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 1.9e-159 566.6 503 60.8
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 1.9e-159 566.6 514 57.0
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 5.6e-159 565.1 494 59.5
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 9.5e-159 564.3 507 58.6
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 9.5e-159 564.3 495 59.0
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 4.7e-158 562.0 498 58.4
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 6.1e-158 561.6 499 58.3
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.0e-157 560.8 499 59.5
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 1.4e-157 560.5 500 59.0
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 1.4e-157 560.5 498 59.8
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 2.3e-157 559.7 576 55.7
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 3.0e-157 559.3 509 57.4
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 2.0e-156 556.6 510 57.1
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 2.0e-156 556.6 510 57.1
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 3.4e-156 555.8 511 57.3
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 3.4e-156 555.8 511 57.3
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 7.5e-156 554.7 499 58.1
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 7.5e-156 554.7 499 58.3
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 3.7e-155 552.4 499 57.7
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 6.4e-155 551.6 507 58.0
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 1.1e-154 550.8 495 59.4
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 3.2e-154 549.3 495 58.2
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 4.1e-154 548.9 495 59.4
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 5.4e-154 548.5 504 57.1
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 2.0e-153 546.6 509 55.6
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 2.0e-153 546.6 509 55.6
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 6.0e-153 545.0 495 57.4
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 3.9e-152 542.3 496 57.3
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 8.6e-152 541.2 502 57.8
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 2.5e-151 539.7 495 57.4
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 5.6e-151 538.5 514 56.4
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 3.6e-150 535.8 495 56.6
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 8.0e-150 534.6 516 56.0
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 3.1e-149 532.7 462 60.4
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 2.0e-148 530.0 504 58.3
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 1.9e-146 523.5 507 54.6
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 9.2e-146 521.2 501 56.5
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 1.2e-145 520.8 493 55.4
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 3.5e-145 519.2 510 55.5
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 1.0e-144 517.7 510 54.7
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 1.7e-144 516.9 499 56.1
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 5.0e-144 515.4 443 60.3
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 8.1e-142 508.1 448 60.3
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 8.1e-142 508.1 510 55.5
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 4.4e-140 502.3 499 55.3
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.7e-139 500.4 504 54.0
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 1.7e-139 500.4 460 56.1
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 1.9e-138 496.9 495 54.1
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 3.2e-138 496.1 455 58.0
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 3.2e-138 496.1 495 53.7
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 1.2e-137 494.2 515 53.6
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 3.5e-137 492.7 495 54.9
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 2.3e-136 490.0 447 56.4
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 9.5e-135 484.6 454 57.3
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 8.1e-134 481.5 439 57.4
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 9.9e-132 474.6 426 60.1
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 4.1e-130 469.2 495 51.3
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 1.3e-128 464.2 489 52.1
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.1e-127 461.1 399 60.2
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 5.6e-127 458.8 501 50.9
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 3.9e-120 436.0 370 58.6
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 8.7e-120 434.9 393 58.8
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 1.3e-115 421.0 394 57.1
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 2.4e-114 416.8 481 50.1
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.6e-113 414.1 361 60.4
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 1.0e-112 411.4 509 46.8
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 3.1e-109 399.8 494 49.2
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.3e-107 394.4 334 59.6
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.7e-105 386.7 498 47.4
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 4.6e-105 386.0 512 42.6
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 6.0e-105 385.6 390 53.1
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 1.0e-104 384.8 356 57.3
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 1.8e-104 384.0 353 57.5
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 5.1e-104 382.5 504 43.5
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 4.0e-101 372.9 585 40.7
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 4.9e-99 365.9 340 56.2
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.2e-97 361.3 399 50.6
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 9.0e-93 345.1 439 45.1
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 8.5e-91 338.6 257 66.5
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 4.2e-90 336.3 498 41.0
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 1.6e-89 334.3 293 57.7
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 2.2e-86 323.9 340 51.2
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 1.1e-82 311.6 244 65.6
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-82 311.2 338 50.6
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.1e-81 305.8 275 58.5
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 5.1e-80 302.8 367 46.0
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-79 301.6 379 48.8
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 8.2e-78 295.4 298 52.7
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 9.1e-77 292.0 241 62.2
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 3.2e-74 283.5 350 48.0
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 3.9e-72 276.6 248 57.3
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 1.1e-71 275.0 233 59.7
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 5.0e-67 259.6 359 43.2
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.6e-63 247.3 214 57.9
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.8e-62 243.0 166 67.5
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 3.1e-61 240.4 176 67.6
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.2e-58 229.9 221 54.3
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-56 225.3 183 59.0
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 5.2e-56 223.0 376 38.0
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-50 205.3 280 45.7
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 4.7e-49 199.9 406 36.2
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 6.1e-49 199.5 199 52.3
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.0e-49 199.1 197 53.8
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 6.3e-46 189.5 201 53.7
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 3.1e-45 187.2 486 32.1
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.6e-44 184.9 189 55.6
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 8.9e-40 169.1 204 48.0
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.7e-35 154.8 145 54.5
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 5.0e-35 153.3 111 63.1
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 1.4e-32 145.2 491 28.1
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 2.7e-28 131.0 104 67.3
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 6.0e-28 129.8 532 25.9
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 6.0e-28 129.8 127 55.1
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 3.9e-27 127.1 111 59.5
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-26 124.8 111 59.5
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.1e-25 121.3 119 61.3
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 3.7e-22 110.5 154 39.6
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 2.7e-20 104.4 93 59.1
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 5.2e-16 90.1 85 55.3
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 6.8e-16 89.7 76 48.7
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 7.6e-15 86.3 79 50.6
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 8.4e-14 82.8 64 68.8
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 9.2e-13 79.3 87 46.0
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 9.2e-13 79.3 78 50.0
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 9.2e-13 79.3 97 48.5
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.2e-12 79.0 80 52.5
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.2e-12 79.0 81 46.9
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 7.8e-12 76.3 69 60.9
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 2.5e-10 71.2 54 59.3
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 1.5e-07 62.0 101 41.6
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.2e-06 58.2 39 71.8


User provided reference genes

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