Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 2.8e-163 578.6 294 100.0
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 7.7e-113 411.0 292 73.6
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 6.5e-112 407.9 292 73.3
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 1.6e-110 403.3 276 74.6
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 1.8e-109 399.8 257 74.7
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 3.0e-109 399.1 291 72.2
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 1.2e-108 397.1 286 72.0
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 2.0e-108 396.4 267 76.0
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 3.4e-108 395.6 291 71.1
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 3.4e-108 395.6 272 72.8
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 1.3e-107 393.7 301 69.1
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.3e-107 393.7 292 68.5
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 1.7e-107 393.3 293 69.3
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 2.8e-107 392.5 260 72.7
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 2.8e-107 392.5 293 67.9
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 2.4e-106 389.4 262 74.0
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 3.1e-106 389.0 264 73.1
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 4.1e-106 388.7 264 74.2
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 5.4e-106 388.3 304 66.8
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 7.0e-106 387.9 292 68.5
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 1.2e-105 387.1 295 67.5
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 1.6e-105 386.7 263 73.4
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 3.5e-105 385.6 260 71.5
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 4.5e-105 385.2 258 74.4
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 4.5e-105 385.2 261 74.3
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 5.9e-105 384.8 315 64.8
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 1.0e-104 384.0 318 65.1
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 1.3e-104 383.6 285 67.7
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 1.7e-104 383.3 264 71.6
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 5.0e-104 381.7 319 64.9
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 5.0e-104 381.7 260 73.1
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 5.0e-104 381.7 247 74.1
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 5.0e-104 381.7 298 66.4
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 6.1e-102 374.8 255 72.5
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 3.0e-101 372.5 294 66.0
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 3.0e-101 372.5 290 65.9
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 4.0e-101 372.1 266 67.7
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 6.8e-101 371.3 260 71.2
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 1.5e-100 370.2 272 69.5
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 2.6e-100 369.4 256 69.5
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 3.4e-100 369.0 266 71.4
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 7.5e-100 367.9 281 66.9
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 9.8e-100 367.5 346 56.9
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.3e-99 367.1 250 73.6
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 8.3e-99 364.4 292 64.4
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 1.4e-98 363.6 228 78.1
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 7.0e-98 361.3 262 69.8
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 1.6e-97 360.1 293 63.5
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 2.0e-97 359.8 291 64.3
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 2.0e-97 359.8 283 64.3
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 2.0e-97 359.8 283 64.3
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 2.7e-97 359.4 292 61.6
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 4.6e-97 358.6 254 69.3
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 4.6e-97 358.6 276 64.1
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 1.0e-96 357.5 292 61.6
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 1.3e-96 357.1 293 65.9
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 2.3e-96 356.3 259 67.6
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 2.3e-96 356.3 276 63.4
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 3.9e-96 355.5 276 64.1
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 5.0e-96 355.1 248 68.5
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 1.1e-95 354.0 291 63.2
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.2e-94 350.5 229 72.9
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 1.6e-94 350.1 288 65.6
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 2.1e-94 349.7 285 62.5
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 2.1e-94 349.7 270 66.3
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 2.8e-94 349.4 297 62.0
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 8.0e-94 347.8 290 61.4
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 1.0e-93 347.4 285 63.5
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 2.3e-93 346.3 251 69.3
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 8.9e-93 344.4 260 66.5
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 1.2e-92 344.0 290 62.4
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 3.4e-92 342.4 228 74.1
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 4.4e-92 342.0 298 61.1
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 5.8e-92 341.7 298 61.1
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 7.5e-92 341.3 228 73.7
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 9.8e-92 340.9 227 71.8
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 9.8e-92 340.9 228 71.1
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 1.7e-91 340.1 288 62.2
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 3.5e-89 332.4 230 69.1
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 2.3e-88 329.7 294 59.9
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 1.5e-87 327.0 244 64.8
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 3.6e-86 322.4 254 61.8
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 4.0e-85 318.9 202 76.7
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 2.0e-84 316.6 216 73.1
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 4.1e-82 308.9 214 71.5
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 6.0e-81 305.1 216 68.5
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 1.2e-78 297.4 204 73.0
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 6.8e-77 291.6 203 72.9
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 2.0e-76 290.0 205 68.3
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 1.7e-75 287.0 267 59.9
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 1.6e-73 280.4 263 54.8
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 2.5e-71 273.1 183 70.5
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 3.6e-70 269.2 246 54.5
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 1.1e-69 267.7 181 74.6
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 5.8e-68 261.9 274 47.4
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 2.7e-65 253.1 222 61.7
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 1.3e-64 250.8 260 49.2
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 6.2e-62 241.9 207 60.9
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 1.4e-61 240.7 165 70.3
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 4.5e-60 235.7 288 48.3
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 2.2e-59 233.4 242 50.4
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 1.1e-45 188.0 134 67.9
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 1.1e-45 188.0 256 44.5
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 3.4e-44 183.0 290 42.8
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.6e-33 147.5 111 64.9
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 3.0e-32 143.3 189 43.4
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 6.9e-29 132.1 99 67.7
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 1.7e-27 127.5 335 30.1
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 2.7e-25 120.2 99 58.6
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 1.1e-23 114.8 299 32.4
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 4.5e-20 102.8 247 34.8
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 3.2e-18 96.7 102 54.9
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 2.0e-12 77.4 48 79.2
Ca_28940_v3 Cicer arietinum L. HOM05D001568 ORTHO05D148655 2.0e-12 77.4 252 25.4
RcHm_v2.0_Chr6g0248571 Rosa chinensis HOM05D001568 ORTHO05D008804 8.5e-11 72.0 80 52.5
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 8.2e-06 55.5 50 50.0


User provided reference genes

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