Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g17000 Coffea canephora HOM05D001579 ORTHO05D003470 1.0e-47 193.0 90 100.0
Glyma.11G117800 Glycine max HOM05D001579 ORTHO05D003470 7.8e-40 166.8 79 93.7
Glyma.12G043200 Glycine max HOM05D001579 ORTHO05D003470 7.8e-40 166.8 79 93.7
Lj1g0020223 Lotus japonicus HOM05D001579 ORTHO05D003470 7.8e-40 166.8 79 93.7
Lalb_Chr03g0025681 Lupinus albus HOM05D001579 ORTHO05D003470 7.8e-40 166.8 80 91.2
Phvul.011G045200 Phaseolus vulgaris HOM05D001579 ORTHO05D003470 7.8e-40 166.8 79 93.7
VMungo1127G1806 Vigna mungo HOM05D001579 ORTHO05D003470 7.8e-40 166.8 79 93.7
Lj3g0013700 Lotus japonicus HOM05D001579 ORTHO05D003470 1.7e-39 165.6 79 92.4
Lalb_Chr01g0002541 Lupinus albus HOM05D001579 ORTHO05D003470 1.7e-39 165.6 80 90.0
ATR0051G048 Amborella trichopoda HOM05D001579 ORTHO05D003470 2.3e-39 165.2 83 86.7
Ca_01102_v3 Cicer arietinum L. HOM05D001579 ORTHO05D003470 3.9e-39 164.5 79 91.1
Glyma.17G231300 Glycine max HOM05D001579 ORTHO05D003470 5.0e-39 164.1 79 92.4
Medtr4g070040 Medicago truncatula HOM05D001579 ORTHO05D003470 1.5e-38 162.5 80 88.8
TAR376G1017 Trochodendron aralioides HOM05D001579 ORTHO05D003470 1.9e-38 162.2 80 88.8
Prupe.8G096800 Prunus persica HOM05D001579 ORTHO05D003470 2.5e-38 161.8 79 92.4
SalBow6G1678 Salvia bowleyana HOM05D001579 ORTHO05D003470 2.5e-38 161.8 79 91.1
GSVIVG01031967001 Vitis vinifera HOM05D001579 ORTHO05D003470 2.5e-38 161.8 80 87.5
BcaB08g35003 Brassica carinata HOM05D001579 ORTHO05D003470 3.3e-38 161.4 80 87.5
MBI01_g34891_MAGBIO Magnolia biondii HOM05D001579 ORTHO05D003470 3.3e-38 161.4 80 90.0
Ah.02g117280 Amaranthus hybridus HOM05D001579 ORTHO05D003470 4.3e-38 161.0 80 87.5
PGR042G0613 Punica granatum HOM05D001579 ORTHO05D003470 4.3e-38 161.0 79 88.6
TPR.G19411 Trifolium pratense HOM05D001579 ORTHO05D003470 4.3e-38 161.0 80 87.5
CAN.G1412.7 Capsicum annuum HOM05D001579 ORTHO05D003470 5.6e-38 160.6 79 92.4
Ciclev10028310m.g Citrus clementina HOM05D001579 ORTHO05D003470 5.6e-38 160.6 79 91.1
Nn1g01939 Nelumbo nucifera HOM05D001579 ORTHO05D003470 5.6e-38 160.6 79 89.9
Sed0021732 Sechium edule HOM05D001579 ORTHO05D003470 5.6e-38 160.6 81 86.4
Sc13g0008990 Simmondsia chinensis HOM05D001579 ORTHO05D003470 5.6e-38 160.6 79 89.9
Solyc02g090860.3 Solanum lycopersicum HOM05D001579 ORTHO05D003470 5.6e-38 160.6 79 92.4
Solyc10g007060.4 Solanum lycopersicum HOM05D001579 ORTHO05D003470 5.6e-38 160.6 79 92.4
Sopen02g035480 Solanum pennellii HOM05D001579 ORTHO05D003470 5.6e-38 160.6 79 92.4
Sopen10g002960 Solanum pennellii HOM05D001579 ORTHO05D003470 5.6e-38 160.6 79 92.4
PGSC0003DMG400004021 Solanum tuberosum HOM05D001579 ORTHO05D003470 5.6e-38 160.6 79 92.4
PGSC0003DMG400025010 Solanum tuberosum HOM05D001579 ORTHO05D003470 5.6e-38 160.6 79 92.4
Psat7g141360 Pisum sativum HOM05D001579 ORTHO05D003470 7.3e-38 160.2 80 87.5
SalBow6G0592 Salvia bowleyana HOM05D001579 ORTHO05D003470 7.3e-38 160.2 79 89.9
Migut.B00751 Erythranthe guttata HOM05D001579 ORTHO05D003470 9.5e-38 159.8 79 88.6
Oeu015994.1 Olea europaea HOM05D001579 ORTHO05D003470 9.5e-38 159.8 79 91.1
Oeu041647.1 Olea europaea HOM05D001579 ORTHO05D003470 9.5e-38 159.8 79 91.1
PSO447G0328 Papaver somniferum HOM05D001579 ORTHO05D003470 9.5e-38 159.8 81 87.7
BcaC07g41119 Brassica carinata HOM05D001579 ORTHO05D003470 1.2e-37 159.5 80 86.2
MD05G1066200 Malus domestica HOM05D001579 ORTHO05D003470 1.2e-37 159.5 79 91.1
unitig_0.g66 Utricularia gibba HOM05D001579 ORTHO05D003470 1.2e-37 159.5 80 87.5
CAN.G1298.23 Capsicum annuum HOM05D001579 ORTHO05D003470 2.1e-37 158.7 79 91.1
PSO478G3633 Papaver somniferum HOM05D001579 ORTHO05D003470 2.1e-37 158.7 81 86.4
Rhsim11G0177200 Rhododendron simsii HOM05D001579 ORTHO05D003470 2.1e-37 158.7 80 85.0
SEGI_28257 Sequoiadendron giganteum HOM05D001579 ORTHO05D003470 2.1e-37 158.7 80 90.0
arahy.Tifrunner.gnm1.ann1.D5Q7RU Arachis hypogaea HOM05D001579 ORTHO05D003470 2.8e-37 158.3 79 89.9
ClCG10G001880 Citrullus lanatus HOM05D001579 ORTHO05D003470 2.8e-37 158.3 79 84.8
Lj7A248G12 Lonicera japonica HOM05D001579 ORTHO05D003470 2.8e-37 158.3 80 86.2
Pp3c2_16770 Physcomitrium patens HOM05D001579 ORTHO05D003470 2.8e-37 158.3 80 87.5
TPR.G23438 Trifolium pratense HOM05D001579 ORTHO05D003470 2.8e-37 158.3 80 86.2
EL10Ac3g05071 Beta vulgaris HOM05D001579 ORTHO05D003470 3.6e-37 157.9 80 83.8
CANSAT80G0427 Cannabis sativa HOM05D001579 ORTHO05D003470 3.6e-37 157.9 79 88.6
AUR62003165 Chenopodium quinoa HOM05D001579 ORTHO05D003470 3.6e-37 157.9 80 83.8
AUR62034190 Chenopodium quinoa HOM05D001579 ORTHO05D003470 3.6e-37 157.9 80 83.8
AUR62034498 Chenopodium quinoa HOM05D001579 ORTHO05D003470 3.6e-37 157.9 80 83.8
Lsat_1_v5_gn_2_67440 Lactuca sativa HOM05D001579 ORTHO05D003470 3.6e-37 157.9 79 87.3
MSTRG.16808 Avicennia marina HOM05D001579 ORTHO05D003470 4.7e-37 157.5 79 89.9
Nitab4.5_0011688g0020 Nicotiana tabacum HOM05D001579 ORTHO05D003470 4.7e-37 157.5 79 89.9
A09p57990 Brassica napus HOM05D001579 ORTHO05D003470 6.2e-37 157.1 80 85.0
Duzib052G0487 Durio zibethinus HOM05D001579 ORTHO05D003470 6.2e-37 157.1 79 87.3
ECA240G1027 Erigeron canadensis HOM05D001579 ORTHO05D003470 6.2e-37 157.1 79 88.6
vmacro11113 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 6.2e-37 157.1 80 85.0
Atru.chr5.3017 Acer truncatum HOM05D001579 ORTHO05D003470 8.0e-37 156.8 79 87.3
AagrBONN_evm.TU.Sc2ySwM_344.2010 Anthoceros agrestis HOM05D001579 ORTHO05D003470 8.0e-37 156.8 85 85.9
CsaV3_3G002020 Cucumis sativus L. HOM05D001579 ORTHO05D003470 8.0e-37 156.8 80 82.5
Eucgr.D00245 Eucalyptus grandis HOM05D001579 ORTHO05D003470 8.0e-37 156.8 78 88.5
HanXRQChr14g0446281 Helianthus annuus HOM05D001579 ORTHO05D003470 8.0e-37 156.8 79 88.6
Nitab4.5_0000974g0080 Nicotiana tabacum HOM05D001579 ORTHO05D003470 8.0e-37 156.8 79 88.6
Thecc.02G085100 Theobroma cacao HOM05D001579 ORTHO05D003470 8.0e-37 156.8 79 86.1
CiPaw.05G064600 Carya illinoinensis HOM05D001579 ORTHO05D003470 1.1e-36 156.4 79 88.6
CDE06G1318 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 1.1e-36 156.4 80 86.2
MELO3C013873.2 Cucumis melo HOM05D001579 ORTHO05D003470 1.1e-36 156.4 80 81.2
AL4G10950 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 1.8e-36 155.6 80 85.0
CSS0013099 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 1.8e-36 155.6 80 83.8
CSS0049673 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 1.8e-36 155.6 80 83.8
Carub.0005s1088 Capsella rubella HOM05D001579 ORTHO05D003470 1.8e-36 155.6 79 86.1
CDE04G1236 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 1.8e-36 155.6 79 87.3
Gohir.A04G130900 Gossypium hirsutum HOM05D001579 ORTHO05D003470 1.8e-36 155.6 79 84.8
Gohir.D04G167200 Gossypium hirsutum HOM05D001579 ORTHO05D003470 1.8e-36 155.6 79 84.8
Gorai.012G155500 Gossypium raimondii HOM05D001579 ORTHO05D003470 1.8e-36 155.6 79 84.8
QL11p043704 Quercus lobata HOM05D001579 ORTHO05D003470 1.8e-36 155.6 79 88.6
Hund14641 Selenicereus undatus HOM05D001579 ORTHO05D003470 1.8e-36 155.6 78 88.5
Cpa.g.sc62.152 Carica papaya HOM05D001579 ORTHO05D003470 2.3e-36 155.2 79 87.3
Thhalv10007412m.g Eutrema salsugineum HOM05D001579 ORTHO05D003470 2.3e-36 155.2 78 87.2
Actinidia27894 Actinidia chinensis HOM05D001579 ORTHO05D003470 3.1e-36 154.8 80 81.2
AL7G11270 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 3.1e-36 154.8 79 86.1
Carub.0007s0120 Capsella rubella HOM05D001579 ORTHO05D003470 3.1e-36 154.8 79 86.1
MD10G1076200 Malus domestica HOM05D001579 ORTHO05D003470 3.1e-36 154.8 79 87.3
Sp4g00870 Schrenkiella parvula HOM05D001579 ORTHO05D003470 3.1e-36 154.8 80 85.0
Actinidia00524 Actinidia chinensis HOM05D001579 ORTHO05D003470 4.0e-36 154.5 80 82.5
AT4G39280 Arabidopsis thaliana HOM05D001579 ORTHO05D003470 4.0e-36 154.5 79 86.1
HanXRQChr14g0437911 Helianthus annuus HOM05D001579 ORTHO05D003470 4.0e-36 154.5 79 87.3
CSS0031219 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 5.2e-36 154.1 80 82.5
QL11p043604 Quercus lobata HOM05D001579 ORTHO05D003470 5.2e-36 154.1 76 90.8
Hund11566 Selenicereus undatus HOM05D001579 ORTHO05D003470 5.2e-36 154.1 80 86.2
Aa31LG7G14810 Aethionema arabicum HOM05D001579 ORTHO05D003470 6.8e-36 153.7 79 84.8
RcHm_v2.0_Chr6g0264251 Rosa chinensis HOM05D001579 ORTHO05D003470 6.8e-36 153.7 80 83.8
TWI79G0010 Tripterygium wilfordii HOM05D001579 ORTHO05D003470 6.8e-36 153.7 79 83.5
THA.LOC104804143 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 8.9e-36 153.3 79 84.8
Cfa005003 Carpinus fangiana HOM05D001579 ORTHO05D003470 1.2e-35 152.9 79 87.3
Haze_02385 Corylus avellana HOM05D001579 ORTHO05D003470 1.2e-35 152.9 79 87.3
FAN16G2055 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.2e-35 152.9 80 82.5
FvH4_2g08790 Fragaria vesca HOM05D001579 ORTHO05D003470 1.5e-35 152.5 80 82.5
FvH4_3g28200 Fragaria vesca HOM05D001579 ORTHO05D003470 1.5e-35 152.5 80 82.5
FAN11G3917 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.5e-35 152.5 80 82.5
FAN15G0032 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.5e-35 152.5 80 82.5
FAN16G0460 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.5e-35 152.5 80 82.5
FAN20G1104 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.5e-35 152.5 80 82.5
FAN21G0623 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.5e-35 152.5 80 82.5
FAN27G2756 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.5e-35 152.5 80 82.5
CARHR265880 Cardamine hirsuta HOM05D001579 ORTHO05D003470 2.6e-35 151.8 79 82.3
COL.COLO4_25932 Corchorus olitorius HOM05D001579 ORTHO05D003470 2.6e-35 151.8 79 84.8
THA.LOC104824827 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 2.6e-35 151.8 79 83.5
CARHR247410 Cardamine hirsuta HOM05D001579 ORTHO05D003470 3.4e-35 151.4 76 85.5
Aqoxy7G01384 Aquilegia oxysepala HOM05D001579 ORTHO05D003470 4.4e-35 151.0 79 83.5
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 4.4e-35 151.0 77 84.4
Manes.17G101200 Manihot esculenta HOM05D001579 ORTHO05D003470 4.4e-35 151.0 80 81.2
RcHm_v2.0_Chr7g0204471 Rosa chinensis HOM05D001579 ORTHO05D003470 4.4e-35 151.0 81 77.8
ATR1101G101 Amborella trichopoda HOM05D001579 ORTHO05D003470 5.8e-35 150.6 78 88.5
Os10g0400800 Oryza sativa ssp. japonica HOM05D001579 ORTHO05D003470 5.8e-35 150.6 80 86.2
Potri.004G155000 Populus trichocarpa HOM05D001579 ORTHO05D003470 5.8e-35 150.6 80 81.2
Sabra04G0102800 Salix brachista HOM05D001579 ORTHO05D003470 5.8e-35 150.6 80 81.2
Hma1.2p1_1375F.1_g279070 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 9.8e-35 149.8 79 82.3
Nitab4.5_0004172g0030 Nicotiana tabacum HOM05D001579 ORTHO05D003470 9.8e-35 149.8 80 82.5
SMO119G0093 Selaginella moellendorffii HOM05D001579 ORTHO05D003470 1.7e-34 149.1 77 87.0
Hma1.2p1_0299F.1_g117910 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 2.9e-34 148.3 82 76.8
Hma1.2p1_0633F.1_g192550 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 2.9e-34 148.3 79 81.0
Potri.009G116100 Populus trichocarpa HOM05D001579 ORTHO05D003470 2.9e-34 148.3 80 80.0
Nitab4.5_0000308g0090 Nicotiana tabacum HOM05D001579 ORTHO05D003470 4.9e-34 147.5 79 82.3
Zm00001eb255720 Zea mays HOM05D001579 ORTHO05D003470 6.4e-34 147.1 79 84.8
CSS0030455 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 8.3e-34 146.7 78 82.1
BcaC02g08772 Brassica carinata HOM05D001579 ORTHO05D003470 1.4e-33 146.0 80 77.5
C04p50830 Brassica napus HOM05D001579 ORTHO05D003470 1.4e-33 146.0 80 77.5
BolC4t26677H Brassica oleracea HOM05D001579 ORTHO05D003470 1.4e-33 146.0 80 77.5
Peaxi162Scf00016g00732 Petunia axillaris HOM05D001579 ORTHO05D003470 1.4e-33 146.0 80 81.2
Cre09.g389430 Chlamydomonas reinhardtii HOM05D001579 ORTHO05D003470 1.9e-33 145.6 79 81.0
Mapoly0012s0145 Marchantia polymorpha HOM05D001579 ORTHO05D003470 3.2e-33 144.8 79 81.0
PRCOL_00000627 Prasinoderma coloniale HOM05D001579 ORTHO05D003470 3.2e-33 144.8 79 78.5
A04p16340 Brassica napus HOM05D001579 ORTHO05D003470 7.0e-33 143.7 80 76.2
BraA04t17272Z Brassica rapa HOM05D001579 ORTHO05D003470 7.0e-33 143.7 80 76.2
Carub.0004s0076 Capsella rubella HOM05D001579 ORTHO05D003470 7.0e-33 143.7 80 78.8
FAN24G0111 Fragaria x ananassa HOM05D001579 ORTHO05D003470 7.0e-33 143.7 87 74.7
SalBow6G2679 Salvia bowleyana HOM05D001579 ORTHO05D003470 1.3e-31 139.4 107 64.5
BcaB06g27782 Brassica carinata HOM05D001579 ORTHO05D003470 2.3e-31 138.7 79 75.9
BcaC08g46255 Brassica carinata HOM05D001579 ORTHO05D003470 2.3e-31 138.7 80 76.2
CiPaw.01G010000 Carya illinoinensis HOM05D001579 ORTHO05D003470 2.3e-31 138.7 73 86.3
MCO10G005 Micromonas commoda HOM05D001579 ORTHO05D003470 2.3e-31 138.7 79 77.2
BcaC08g45384 Brassica carinata HOM05D001579 ORTHO05D003470 6.6e-31 137.1 72 81.9
C06p30160 Brassica napus HOM05D001579 ORTHO05D003470 6.6e-31 137.1 72 81.9
BolC6t38178H Brassica oleracea HOM05D001579 ORTHO05D003470 6.6e-31 137.1 72 81.9
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 9.5e-30 133.3 72 81.9
BcaB03g12963 Brassica carinata HOM05D001579 ORTHO05D003470 1.6e-29 132.5 79 72.2
DCAR_006198 Daucus carota HOM05D001579 ORTHO05D003470 3.6e-29 131.3 146 47.9
PSO170G0890 Papaver somniferum HOM05D001579 ORTHO05D003470 6.2e-29 130.6 79 75.9
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 6.8e-28 127.1 63 87.3
CARHR112710 Cardamine hirsuta HOM05D001579 ORTHO05D003470 5.8e-27 124.0 63 87.3
BcaB03g15109 Brassica carinata HOM05D001579 ORTHO05D003470 3.7e-26 121.3 66 81.8
vmacro02105 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 7.1e-25 117.1 79 70.9
Haze_27501 Corylus avellana HOM05D001579 ORTHO05D003470 4.6e-24 114.4 67 76.1
Cfa025854 Carpinus fangiana HOM05D001579 ORTHO05D003470 6.0e-24 114.0 77 62.3
BcaC08g46254 Brassica carinata HOM05D001579 ORTHO05D003470 4.0e-20 101.3 57 78.9
SGA_v2.0_scaffold32G13167 Striga asiatica HOM05D001579 ORTHO05D003470 1.7e-18 95.9 63 73.0
C08p41200 Brassica napus HOM05D001579 ORTHO05D003470 3.2e-17 91.7 45 86.7
BolC8t51687H Brassica oleracea HOM05D001579 ORTHO05D003470 3.2e-17 91.7 45 86.7
Lj2C359T3 Lonicera japonica HOM05D001579 ORTHO05D003470 4.2e-17 91.3 45 86.7
Lj7C253T7 Lonicera japonica HOM05D001579 ORTHO05D003470 4.2e-17 91.3 45 86.7
SGA_v2.0_scaffold58G20534 Striga asiatica HOM05D001579 ORTHO05D003470 5.4e-17 90.9 45 88.9
CiPaw.01G010500 Carya illinoinensis HOM05D001579 ORTHO05D003470 7.1e-17 90.5 45 88.9
CiPaw.01G010800 Carya illinoinensis HOM05D001579 ORTHO05D003470 7.1e-17 90.5 45 88.9
BraA09t41189Z Brassica rapa HOM05D001579 ORTHO05D003470 1.6e-16 89.4 45 84.4
Duzib132G0542 Durio zibethinus HOM05D001579 ORTHO05D003470 2.1e-16 89.0 45 84.4
CBR_g23301 Chara braunii HOM05D001579 ORTHO05D003470 1.7e-15 85.9 45 82.2
CARHR112730 Cardamine hirsuta HOM05D001579 ORTHO05D003470 2.3e-15 85.5 45 82.2
SalBow6G3810 Salvia bowleyana HOM05D001579 ORTHO05D003470 9.6e-14 80.1 103 44.7
arahy.Tifrunner.gnm1.ann1.L5L68D Arachis hypogaea HOM05D001579 ORTHO05D005341 1.4e-09 66.2 46 67.4
CAN.G294.17 Capsicum annuum HOM05D001579 ORTHO05D003470 2.5e-06 55.5 31 77.4


User provided reference genes

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