Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 1.5e-68 262.7 130 100.0
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 8.6e-32 140.6 107 72.0
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 4.4e-28 128.3 117 60.7
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 9.9e-28 127.1 117 59.8
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 1.7e-27 126.3 117 59.0
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 2.9e-27 125.6 117 59.8
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 3.7e-27 125.2 117 59.0
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 8.3e-27 124.0 117 60.7
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 1.9e-26 122.9 117 58.1
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.9e-26 122.9 101 64.4
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 2.4e-26 122.5 114 62.3
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 4.1e-26 121.7 118 60.2
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 4.1e-26 121.7 98 69.4
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 5.4e-26 121.3 111 63.1
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 5.4e-26 121.3 111 63.1
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 5.4e-26 121.3 107 63.6
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 7.1e-26 120.9 117 59.0
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 7.1e-26 120.9 119 57.1
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 9.2e-26 120.6 117 58.1
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.2e-25 120.2 102 63.7
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 1.2e-25 120.2 111 60.4
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 1.2e-25 120.2 111 60.4
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 1.6e-25 119.8 95 71.6
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 2.1e-25 119.4 117 57.3
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 3.5e-25 118.6 111 59.5
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 3.5e-25 118.6 111 62.2
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 7.8e-25 117.5 107 63.6
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 1.0e-24 117.1 90 67.8
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 1.7e-24 116.3 90 65.6
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.7e-24 116.3 92 65.2
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 1.7e-24 116.3 111 61.3
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 2.3e-24 115.9 111 60.4
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 2.3e-24 115.9 90 65.6
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 3.0e-24 115.5 111 59.5
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 3.9e-24 115.2 114 58.8
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 5.1e-24 114.8 117 55.6
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 5.1e-24 114.8 117 56.4
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 8.6e-24 114.0 117 55.6
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 8.6e-24 114.0 117 55.6
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 8.6e-24 114.0 111 61.3
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.1e-23 113.6 114 57.9
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 1.1e-23 113.6 123 54.5
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 1.1e-23 113.6 115 54.8
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 1.5e-23 113.2 111 59.5
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.5e-23 113.2 111 60.4
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.9e-23 112.8 111 58.6
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 1.9e-23 112.8 111 56.8
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 2.5e-23 112.5 117 55.6
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 2.5e-23 112.5 117 53.8
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 4.3e-23 111.7 90 61.1
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 5.6e-23 111.3 117 52.1
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 5.6e-23 111.3 90 65.6
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 7.3e-23 110.9 90 65.6
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 7.3e-23 110.9 111 56.8
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 7.3e-23 110.9 111 56.8
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 7.3e-23 110.9 116 57.8
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 7.3e-23 110.9 117 53.8
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 7.3e-23 110.9 117 54.7
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 7.3e-23 110.9 90 67.8
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 9.5e-23 110.5 122 50.8
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 1.6e-22 109.8 90 62.2
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 2.8e-22 109.0 90 63.3
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 2.8e-22 109.0 90 60.0
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 2.8e-22 109.0 94 66.0
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 3.6e-22 108.6 90 62.2
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 6.2e-22 107.8 98 56.1
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 6.2e-22 107.8 95 60.0
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 8.1e-22 107.5 90 63.3
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 8.1e-22 107.5 101 57.4
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 8.1e-22 107.5 117 51.3
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 1.4e-21 106.7 117 52.1
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.8e-21 106.3 111 53.2
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 1.8e-21 106.3 111 55.9
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 2.4e-21 105.9 110 55.5
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 2.4e-21 105.9 111 51.4
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 4.0e-21 105.1 111 53.2
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 4.0e-21 105.1 117 50.4
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 5.2e-21 104.8 90 57.8
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 1.2e-20 103.6 111 55.9
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.0e-20 102.8 117 49.6
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.0e-20 102.8 117 49.6
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.0e-20 102.8 117 49.6
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 2.0e-20 102.8 114 52.6
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 2.0e-20 102.8 119 50.4
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 2.6e-20 102.4 117 49.6
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 2.6e-20 102.4 117 52.1
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 3.4e-20 102.1 90 58.9
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 4.4e-20 101.7 90 58.9
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 4.4e-20 101.7 111 55.9
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 7.6e-20 100.9 93 60.2
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 7.6e-20 100.9 90 64.4
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 9.9e-20 100.5 132 47.0
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 1.3e-19 100.1 117 48.7
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 1.3e-19 100.1 100 54.0
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 1.3e-19 100.1 114 50.0
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 4.9e-19 98.2 117 47.0
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 1.1e-18 97.1 117 47.9
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 1.1e-18 97.1 88 58.0
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 1.9e-18 96.3 118 52.5
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 3.2e-18 95.5 115 50.4
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 9.2e-18 94.0 90 57.8
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 2.1e-17 92.8 65 72.3
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 2.1e-17 92.8 117 47.9
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 3.5e-17 92.0 85 58.8
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 4.6e-17 91.7 95 52.6
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 4.6e-17 91.7 68 73.5
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 6.6e-16 87.8 117 47.0
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 6.6e-16 87.8 117 47.0
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 8.7e-16 87.4 117 46.2
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 8.7e-16 87.4 117 46.2
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 8.7e-16 87.4 117 46.2
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 1.1e-15 87.0 117 46.2
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 5.6e-15 84.7 59 69.5
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 5.6e-15 84.7 97 49.5
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 7.3e-15 84.3 90 52.2
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 7.3e-15 84.3 88 53.4
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 2.8e-14 82.4 60 68.3
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 4.8e-14 81.6 89 50.6
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 1.1e-13 80.5 65 63.1
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.8e-13 79.7 74 59.5
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 1.8e-13 79.7 109 47.7
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 3.1e-13 79.0 95 52.6
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 4.0e-13 78.6 90 54.4
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 9.0e-13 77.4 90 52.2
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 3.4e-12 75.5 94 48.9
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 3.4e-12 75.5 94 48.9
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 3.4e-12 75.5 91 45.1
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 3.8e-11 72.0 55 61.8
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 3.8e-11 72.0 109 41.3
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 8.4e-11 70.9 91 41.8
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 1.4e-10 70.1 114 41.2
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 2.4e-10 69.3 56 58.9
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 2.4e-10 69.3 109 40.4
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 2.1e-09 66.2 84 46.4
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 1.3e-06 57.0 100 42.0


User provided reference genes

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