Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g16910 Coffea canephora HOM05D000120 ORTHO05D153667 1.0e-66 256.5 121 100.0
Cc05_g03130 Coffea canephora HOM05D000120 ORTHO05D000068 4.6e-11 71.6 35 91.4
Cc00_g33100 Coffea canephora HOM05D000120 ORTHO05D000068 6.6e-10 67.8 32 93.8
Cc00_g30620 Coffea canephora HOM05D000120 ORTHO05D000068 1.6e-08 63.2 128 39.8
Dinv08728 Davidia involucrata HOM05D000120 ORTHO05D000068 1.8e-07 59.7 35 71.4
COL.COLO4_21863 Corchorus olitorius HOM05D000120 ORTHO05D000068 2.3e-07 59.3 35 74.3
TAR629G2440 Trochodendron aralioides HOM05D000120 ORTHO05D000068 2.3e-07 59.3 35 74.3
Nn1g03384 Nelumbo nucifera HOM05D000120 ORTHO05D000068 3.1e-07 58.9 35 74.3
PSO675G0455 Papaver somniferum HOM05D000120 ORTHO05D000068 4.0e-07 58.5 35 74.3
Glyma.14G019900 Glycine max HOM05D000120 ORTHO05D000068 5.2e-07 58.2 38 65.8
Lj8A129G88 Lonicera japonica HOM05D000120 ORTHO05D000068 5.2e-07 58.2 35 74.3
PSO675G1984 Papaver somniferum HOM05D000120 ORTHO05D000068 5.2e-07 58.2 35 74.3
TAR626G1163 Trochodendron aralioides HOM05D000120 ORTHO05D000068 5.2e-07 58.2 35 74.3
CAN.G664.1 Capsicum annuum HOM05D000120 ORTHO05D000068 8.9e-07 57.4 35 68.6
Ca_06099_v3 Cicer arietinum L. HOM05D000120 ORTHO05D000068 8.9e-07 57.4 35 68.6
Glyma.02G293900 Glycine max HOM05D000120 ORTHO05D000068 8.9e-07 57.4 35 71.4
Nitab4.5_0000482g0200 Nicotiana tabacum HOM05D000120 ORTHO05D000068 8.9e-07 57.4 35 68.6
Nitab4.5_0003310g0040 Nicotiana tabacum HOM05D000120 ORTHO05D000068 8.9e-07 57.4 35 68.6
Sabra14G0119300 Salix brachista HOM05D000120 ORTHO05D000068 8.9e-07 57.4 35 71.4
CiPaw.11G193800 Carya illinoinensis HOM05D000120 ORTHO05D000068 1.2e-06 57.0 35 74.3
Gohir.A11G153300 Gossypium hirsutum HOM05D000120 ORTHO05D000068 1.2e-06 57.0 35 68.6
Gohir.D11G160000 Gossypium hirsutum HOM05D000120 ORTHO05D000068 1.2e-06 57.0 35 68.6
Gorai.007G170600 Gossypium raimondii HOM05D000120 ORTHO05D000068 1.2e-06 57.0 35 68.6
MD11G1211100 Malus domestica HOM05D000120 ORTHO05D000068 1.2e-06 57.0 35 71.4
Potri.002G225200 Populus trichocarpa HOM05D000120 ORTHO05D000068 1.2e-06 57.0 35 71.4
Potri.014G157600 Populus trichocarpa HOM05D000120 ORTHO05D000068 1.2e-06 57.0 35 71.4
PGR142G0350 Punica granatum HOM05D000120 ORTHO05D000068 1.2e-06 57.0 35 68.6
vmacro09355 Vaccinium macrocarpon HOM05D000120 ORTHO05D000068 1.2e-06 57.0 35 65.7
CiPaw.04G111300 Carya illinoinensis HOM05D000120 ORTHO05D000068 1.5e-06 56.6 35 68.6
Ciclev10014884m.g Citrus clementina HOM05D000120 ORTHO05D000068 1.5e-06 56.6 35 71.4
Manes.12G070600 Manihot esculenta HOM05D000120 ORTHO05D000068 1.5e-06 56.6 35 71.4
Atru.chr6.3246 Acer truncatum HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 68.6
Aqoxy1G02944 Aquilegia oxysepala HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 68.6
CSS0045018 Camellia sinensis var. sinensis HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 71.4
Cfa020291 Carpinus fangiana HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 71.4
CiPaw.03G156300 Carya illinoinensis HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 65.7
ClCG09G011260 Citrullus lanatus HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 68.6
Haze_09730 Corylus avellana HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 71.4
MELO3C014430.2 Cucumis melo HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 68.6
CsaV3_6G037680 Cucumis sativus L. HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 68.6
DCAR_019261 Daucus carota HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 65.7
Dinv22239 Davidia involucrata HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 68.6
Dinv39744 Davidia involucrata HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 68.6
Glyma.02G269400 Glycine max HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 68.6
Hma1.2p1_0445F.1_g154440 Hydrangea macrophylla HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 71.4
Hma1.2p1_2381F.1_g321000 Hydrangea macrophylla HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 71.4
Phvul.008G212700 Phaseolus vulgaris HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 68.6
Prupe.3G211500 Prunus persica HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 68.6
Sed0015634 Sechium edule HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 68.6
Solyc07g049300.3 Solanum lycopersicum HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 65.7
Sopen07g024630 Solanum pennellii HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 65.7
vmacro22324 Vaccinium macrocarpon HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 71.4
VMungo0647G2321 Vigna mungo HOM05D000120 ORTHO05D000068 2.0e-06 56.2 35 68.6
Duzib138G1345 Durio zibethinus HOM05D000120 ORTHO05D000068 2.6e-06 55.8 35 71.4
HanXRQChr16g0506691 Helianthus annuus HOM05D000120 ORTHO05D000068 2.6e-06 55.8 35 68.6
Nn1g07281 Nelumbo nucifera HOM05D000120 ORTHO05D000068 2.6e-06 55.8 35 68.6
Os02g0738600 Oryza sativa ssp. japonica HOM05D000120 ORTHO05D000068 2.6e-06 55.8 34 64.7
PSO541G2176 Papaver somniferum HOM05D000120 ORTHO05D000068 2.6e-06 55.8 35 71.4
Phvul.008G270900 Phaseolus vulgaris HOM05D000120 ORTHO05D000068 2.6e-06 55.8 35 68.6
QL08p030976 Quercus lobata HOM05D000120 ORTHO05D000068 2.6e-06 55.8 35 65.7
Rhsim04G0051200 Rhododendron simsii HOM05D000120 ORTHO05D000068 2.6e-06 55.8 35 65.7
PGSC0003DMG401000668 Solanum tuberosum HOM05D000120 ORTHO05D000068 2.6e-06 55.8 35 65.7
Thecc.07G030100 Theobroma cacao HOM05D000120 ORTHO05D000068 2.6e-06 55.8 35 68.6
VMungo0647G2361 Vigna mungo HOM05D000120 ORTHO05D000068 2.6e-06 55.8 35 68.6
DCAR_021144 Daucus carota HOM05D000012 ORTHO05D000978 3.4e-06 55.5 35 68.6
Lj8A22T72 Lonicera japonica HOM05D000120 ORTHO05D000068 3.4e-06 55.5 35 68.6
TPR.G1227 Trifolium pratense HOM05D000120 ORTHO05D000068 3.4e-06 55.5 35 68.6
HPP92_017470 Vanilla planifolia HOM05D000120 ORTHO05D000068 3.4e-06 55.5 35 65.7
Cfa014323 Carpinus fangiana HOM05D000120 ORTHO05D000068 4.4e-06 55.1 35 68.6
Haze_12775 Corylus avellana HOM05D000120 ORTHO05D000068 4.4e-06 55.1 35 68.6
FAN09G1920 Fragaria x ananassa HOM05D000120 ORTHO05D000978 4.4e-06 55.1 35 65.7
Hma1.2p1_0036F.1_g023220 Hydrangea macrophylla HOM05D000120 ORTHO05D000068 4.4e-06 55.1 35 68.6
Lj6g0006504 Lotus japonicus HOM05D000120 ORTHO05D000068 4.4e-06 55.1 35 68.6
Lalb_Chr17g0347311 Lupinus albus HOM05D000120 ORTHO05D000068 4.4e-06 55.1 35 65.7
MD09G1113100 Malus domestica HOM05D000120 ORTHO05D000068 4.4e-06 55.1 35 65.7
MD17G1103100 Malus domestica HOM05D000120 ORTHO05D000068 4.4e-06 55.1 35 65.7
Medtr5g093590 Medicago truncatula HOM05D000120 ORTHO05D000068 4.4e-06 55.1 35 65.7
Psat2g025000 Pisum sativum HOM05D000120 ORTHO05D000068 4.4e-06 55.1 35 68.6
Ah.02g128330 Amaranthus hybridus HOM05D000120 ORTHO05D000068 5.8e-06 54.7 35 62.9
arahy.Tifrunner.gnm1.ann1.CN7NWN Arachis hypogaea HOM05D000120 ORTHO05D000068 5.8e-06 54.7 35 68.6
arahy.Tifrunner.gnm1.ann1.TFHC41 Arachis hypogaea HOM05D000120 ORTHO05D000068 5.8e-06 54.7 35 68.6
Ca_06344_v3 Cicer arietinum L. HOM05D000120 ORTHO05D000068 5.8e-06 54.7 35 68.6
ClCG10G005200 Citrullus lanatus HOM05D000120 ORTHO05D000068 5.8e-06 54.7 35 65.7
MELO3C014184.2 Cucumis melo HOM05D000120 ORTHO05D000068 5.8e-06 54.7 35 68.6
Gohir.A01G083400 Gossypium hirsutum HOM05D000120 ORTHO05D000068 5.8e-06 54.7 35 65.7
Gohir.D07G089500 Gossypium hirsutum HOM05D000120 ORTHO05D000068 5.8e-06 54.7 35 68.6
Gorai.001G095700 Gossypium raimondii HOM05D000120 ORTHO05D000068 5.8e-06 54.7 35 68.6
Gorai.002G092400 Gossypium raimondii HOM05D000120 ORTHO05D000068 5.8e-06 54.7 35 65.7
HanXRQChr04g0126891 Helianthus annuus HOM05D000120 ORTHO05D000068 5.8e-06 54.7 35 65.7
LjContig00272g0018888 Lotus japonicus HOM05D000120 ORTHO05D000068 5.8e-06 54.7 35 68.6
Os01g0220100 Oryza sativa ssp. japonica HOM05D000120 ORTHO05D000068 5.8e-06 54.7 37 59.5
Os02g0151300 Oryza sativa ssp. japonica HOM05D000120 ORTHO05D000068 5.8e-06 54.7 35 65.7
Rhsim06G0222500 Rhododendron simsii HOM05D000120 ORTHO05D000068 5.8e-06 54.7 35 68.6
CDE04G3064 Ceratophyllum demersum HOM05D000120 ORTHO05D000068 7.6e-06 54.3 35 62.9
DCAR_019745 Daucus carota HOM05D000120 ORTHO05D000978 7.6e-06 54.3 35 68.6
Potri.001G356000 Populus trichocarpa HOM05D000120 ORTHO05D000068 7.6e-06 54.3 35 68.6
Prupe.4G221700 Prunus persica HOM05D000120 ORTHO05D000068 7.6e-06 54.3 35 65.7
Sabra16G0234000 Salix brachista HOM05D000120 ORTHO05D000068 7.6e-06 54.3 35 68.6
Thecc.01G181100 Theobroma cacao HOM05D000120 ORTHO05D000068 7.6e-06 54.3 35 68.6
TPR.G34505 Trifolium pratense HOM05D000120 ORTHO05D000068 7.6e-06 54.3 35 71.4
Atru.chr2.3509 Acer truncatum HOM05D000120 ORTHO05D000068 9.9e-06 53.9 35 62.9
Aa31LG5G4210 Aethionema arabicum HOM05D000120 ORTHO05D000068 9.9e-06 53.9 35 62.9
CsaV3_3G004880 Cucumis sativus L. HOM05D000120 ORTHO05D000068 9.9e-06 53.9 35 68.6
DCAR_017110 Daucus carota HOM05D000120 ORTHO05D000068 9.9e-06 53.9 35 65.7
Duzib170G1102 Durio zibethinus HOM05D000120 ORTHO05D000068 9.9e-06 53.9 35 65.7
Duzib213G0950 Durio zibethinus HOM05D000120 ORTHO05D000068 9.9e-06 53.9 35 62.9
FvH4_6g42440 Fragaria vesca HOM05D000120 ORTHO05D000068 9.9e-06 53.9 35 65.7
FAN14G2284 Fragaria x ananassa HOM05D000120 ORTHO05D000978 9.9e-06 53.9 35 65.7
RcHm_v2.0_Chr2g0158331 Rosa chinensis HOM05D000120 ORTHO05D000068 9.9e-06 53.9 35 65.7
TWI36G1243 Tripterygium wilfordii HOM05D000120 ORTHO05D000068 9.9e-06 53.9 35 65.7


User provided reference genes

Program Settings