Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 1.4e-60 236.1 118 100.0
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 1.7e-26 122.9 136 55.1
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 6.4e-26 120.9 138 55.1
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 4.6e-24 114.8 120 58.3
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 4.6e-24 114.8 129 54.3
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 5.1e-23 111.3 126 51.6
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 2.5e-22 109.0 135 48.1
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 3.3e-22 108.6 131 48.9
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 5.6e-22 107.8 131 48.1
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.3e-21 106.7 135 45.9
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 1.3e-21 106.7 116 54.3
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 2.1e-21 105.9 119 57.1
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 4.8e-21 104.8 68 73.5
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 8.1e-21 104.0 133 48.9
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.4e-20 103.2 131 48.9
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.4e-20 103.2 126 50.8
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.8e-20 102.8 114 50.9
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 3.1e-20 102.1 128 51.6
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 5.3e-20 101.3 128 50.0
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 5.3e-20 101.3 114 51.8
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 5.3e-20 101.3 64 75.0
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 5.3e-20 101.3 102 55.9
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 6.9e-20 100.9 131 51.1
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.2e-19 100.1 127 51.2
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.2e-19 100.1 102 54.9
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.5e-19 99.8 116 50.9
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 3.4e-19 98.6 124 48.4
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 9.9e-19 97.1 122 49.2
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.3e-18 96.7 127 46.5
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 1.7e-18 96.3 79 57.0
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 2.2e-18 95.9 123 48.0
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 3.8e-18 95.1 125 47.2
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 6.4e-18 94.4 65 70.8
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 6.4e-18 94.4 126 48.4
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.4e-18 94.4 112 49.1
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.4e-18 94.4 127 50.4
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 8.4e-18 94.0 127 50.4
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 1.1e-17 93.6 116 50.0
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.1e-17 93.6 121 47.9
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.4e-17 93.2 84 54.8
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 1.4e-17 93.2 70 70.0
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 1.9e-17 92.8 62 67.7
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 1.9e-17 92.8 118 45.8
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 2.4e-17 92.4 84 54.8
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 2.4e-17 92.4 121 46.3
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.2e-17 91.7 76 59.2
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 4.2e-17 91.7 68 64.7
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 4.2e-17 91.7 113 49.6
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 5.4e-17 91.3 122 42.6
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 5.4e-17 91.3 126 46.8
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 5.4e-17 91.3 66 65.2
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 5.4e-17 91.3 94 54.3
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 7.1e-17 90.9 115 48.7
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 7.1e-17 90.9 84 53.6
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 7.1e-17 90.9 118 45.8
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 7.1e-17 90.9 155 40.6
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 7.1e-17 90.9 94 54.3
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 9.3e-17 90.5 130 46.2
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 9.3e-17 90.5 134 47.8
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 1.2e-16 90.1 60 66.7
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.6e-16 89.7 138 42.0
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.6e-16 89.7 134 47.8
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 1.6e-16 89.7 63 68.3
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 2.1e-16 89.4 124 44.4
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 3.5e-16 88.6 122 47.5
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 3.5e-16 88.6 56 69.6
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 3.5e-16 88.6 139 44.6
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 4.6e-16 88.2 65 67.7
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 6.0e-16 87.8 122 48.4
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 7.9e-16 87.4 56 69.6
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 1.0e-15 87.0 58 67.2
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.8e-15 86.3 64 64.1
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 2.3e-15 85.9 114 44.7
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 2.3e-15 85.9 67 65.7
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 2.3e-15 85.9 116 48.3
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.0e-15 85.5 114 40.4
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.9e-15 85.1 112 45.5
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 5.1e-15 84.7 120 41.7
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 6.7e-15 84.3 56 71.4
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 6.7e-15 84.3 127 47.2
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 8.7e-15 84.0 54 74.1
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.9e-14 82.8 122 42.6
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 1.9e-14 82.8 62 61.3
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 2.5e-14 82.4 53 67.9
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 2.5e-14 82.4 138 40.6
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.5e-14 82.4 59 61.0
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 3.3e-14 82.0 102 48.0
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 3.3e-14 82.0 114 43.9
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 4.3e-14 81.6 112 43.8
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 4.3e-14 81.6 111 45.0
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 7.4e-14 80.9 121 43.8
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 9.6e-14 80.5 53 66.0
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.6e-13 79.7 88 51.1
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 1.6e-13 79.7 55 61.8
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 2.8e-13 79.0 116 43.1
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 4.8e-13 78.2 62 59.7
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 4.8e-13 78.2 63 58.7
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 4.8e-13 78.2 97 44.3
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 4.8e-13 78.2 124 40.3
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 4.8e-13 78.2 118 43.2
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 6.2e-13 77.8 57 64.9
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 6.2e-13 77.8 70 54.3
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 8.1e-13 77.4 99 45.5
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 1.4e-12 76.6 64 56.2
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 2.4e-12 75.9 109 43.1
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.4e-12 75.9 116 41.4
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 3.1e-12 75.5 50 70.0
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 4.0e-12 75.1 50 70.0
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 4.0e-12 75.1 90 52.2
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 5.3e-12 74.7 58 62.1
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 6.9e-12 74.3 50 70.0
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 6.9e-12 74.3 50 68.0
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 6.9e-12 74.3 56 64.3
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 6.9e-12 74.3 130 44.6
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 6.9e-12 74.3 59 59.3
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 9.0e-12 73.9 83 50.6
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 9.0e-12 73.9 50 70.0
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 1.2e-11 73.6 105 42.9
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 1.2e-11 73.6 105 42.9
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 1.2e-11 73.6 105 42.9
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.2e-11 73.6 56 64.3
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.0e-11 72.8 116 38.8
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 2.0e-11 72.8 98 49.0
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.0e-11 72.8 114 41.2
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 2.0e-11 72.8 116 36.2
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 3.4e-11 72.0 50 68.0
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 3.4e-11 72.0 61 59.0
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 4.5e-11 71.6 50 66.0
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 4.5e-11 71.6 48 70.8
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 5.8e-11 71.2 48 70.8
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 5.8e-11 71.2 59 61.0
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 7.6e-11 70.9 56 58.9
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 7.6e-11 70.9 104 36.5
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 7.6e-11 70.9 132 37.9
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 9.9e-11 70.5 61 50.8
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 9.9e-11 70.5 103 41.7
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 9.9e-11 70.5 50 64.0
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.3e-10 70.1 63 55.6
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 1.3e-10 70.1 104 38.5
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 1.3e-10 70.1 104 38.5
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 1.7e-10 69.7 83 49.4
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 1.7e-10 69.7 83 49.4
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 2.2e-10 69.3 56 62.5
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 2.2e-10 69.3 127 40.2
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 2.2e-10 69.3 56 60.7
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 2.2e-10 69.3 56 60.7
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 2.2e-10 69.3 56 60.7
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 2.2e-10 69.3 127 40.2
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 2.2e-10 69.3 56 60.7
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 2.2e-10 69.3 56 60.7
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 2.9e-10 68.9 52 63.5
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 2.9e-10 68.9 62 56.5
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 2.9e-10 68.9 66 54.5
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 3.8e-10 68.6 60 60.0
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 4.9e-10 68.2 68 48.5
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 4.9e-10 68.2 61 55.7
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.1e-09 67.0 57 59.6
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 1.1e-09 67.0 127 40.2
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 1.1e-09 67.0 103 40.8
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 1.1e-09 67.0 103 40.8
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 1.4e-09 66.6 129 39.5
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 1.4e-09 66.6 129 39.5
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 1.4e-09 66.6 129 39.5
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 1.4e-09 66.6 129 39.5
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 1.4e-09 66.6 55 60.0
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 1.9e-09 66.2 55 60.0
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 1.9e-09 66.2 127 38.6
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 1.9e-09 66.2 59 55.9
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 1.9e-09 66.2 49 57.1
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.4e-09 65.9 61 55.7
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 3.2e-09 65.5 50 56.0
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 3.5e-08 62.0 56 51.8
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 4.6e-08 61.6 57 52.6
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 1.8e-07 59.7 50 56.0
Lalb_Chr17g0349061 Lupinus albus HOM05D003595 ORTHO05D004132 1.8e-07 59.7 106 40.6
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 3.0e-07 58.9 68 42.6
Aqoxy2G00199 Aquilegia oxysepala HOM05D003595 ORTHO05D004132 3.9e-07 58.5 93 36.6
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.7e-07 57.8 59 47.5
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.5e-06 56.6 49 53.1
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.5e-06 56.6 102 35.3
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.5e-06 56.6 102 35.3
SEGI_13071 Sequoiadendron giganteum HOM05D002383 ORTHO05D002515 7.4e-06 54.3 51 52.9
Atru.chr11.2114 Acer truncatum HOM05D002383 ORTHO05D002515 9.6e-06 53.9 78 41.0
Atru.chr11.2129 Acer truncatum HOM05D002383 ORTHO05D002515 9.6e-06 53.9 78 41.0
unitig_8.g2994 Utricularia gibba HOM05D003595 ORTHO05D004132 9.6e-06 53.9 50 52.0


User provided reference genes

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