Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g16680 Coffea canephora HOM05D002225 ORTHO05D002271 1.0e-63 246.5 119 100.0
Cc06_g20730 Coffea canephora HOM05D002225 ORTHO05D002271 3.3e-46 188.3 125 78.4
Cc01_g13630 Coffea canephora HOM05D002225 ORTHO05D002271 1.1e-44 183.3 106 86.8
Cc08_g10240 Coffea canephora HOM05D002225 ORTHO05D002271 1.5e-43 179.5 106 85.8
Cc00_g24990 Coffea canephora HOM05D002225 ORTHO05D002271 1.3e-42 176.4 128 73.4
Cc01_g09690 Coffea canephora HOM05D002225 ORTHO05D002271 1.3e-39 166.4 99 81.8
FAN12G1732 Fragaria x ananassa HOM05D002225 ORTHO05D002271 1.5e-38 162.9 106 75.5
RcHm_v2.0_Chr4g0446381 Rosa chinensis HOM05D002225 ORTHO05D002271 1.5e-38 162.9 106 76.4
Manes.03G080700 Manihot esculenta HOM05D002225 ORTHO05D002271 2.5e-38 162.2 106 75.5
FvH4_4g36670 Fragaria vesca HOM05D002225 ORTHO05D002271 3.3e-38 161.8 106 75.5
FAN07G1200 Fragaria x ananassa HOM05D002225 ORTHO05D002271 3.3e-38 161.8 106 75.5
Dinv26526 Davidia involucrata HOM05D002225 ORTHO05D002271 4.3e-38 161.4 106 75.5
FAN17G0793 Fragaria x ananassa HOM05D002225 ORTHO05D002271 4.3e-38 161.4 106 74.5
CiPaw.05G167700 Carya illinoinensis HOM05D002225 ORTHO05D002271 5.6e-38 161.0 106 76.4
GSVIVG01010189001 Vitis vinifera HOM05D002225 ORTHO05D002271 5.6e-38 161.0 106 75.5
TWI53G1061 Tripterygium wilfordii HOM05D002225 ORTHO05D002271 1.6e-37 159.5 106 74.5
CSS0033303 Camellia sinensis var. sinensis HOM05D002225 ORTHO05D002271 2.8e-37 158.7 106 74.5
Lj6A722G88 Lonicera japonica HOM05D002225 ORTHO05D002271 2.8e-37 158.7 107 74.8
Potri.008G085700 Populus trichocarpa HOM05D002225 ORTHO05D002271 2.8e-37 158.7 106 74.5
arahy.Tifrunner.gnm1.ann1.RAZH9U Arachis hypogaea HOM05D002225 ORTHO05D002271 3.7e-37 158.3 106 74.5
arahy.Tifrunner.gnm1.ann1.X31W74 Arachis hypogaea HOM05D002225 ORTHO05D002271 3.7e-37 158.3 106 74.5
TWI74G0237 Tripterygium wilfordii HOM05D002225 ORTHO05D002271 3.7e-37 158.3 106 74.5
Oeu044074.1 Olea europaea HOM05D002225 ORTHO05D002271 4.8e-37 157.9 106 72.6
Sabra08G0063400 Salix brachista HOM05D002225 ORTHO05D002271 4.8e-37 157.9 106 73.6
Prupe.1G344700 Prunus persica HOM05D002225 ORTHO05D002271 6.2e-37 157.5 106 72.6
Thecc.02G295200 Theobroma cacao HOM05D002225 ORTHO05D002271 6.2e-37 157.5 106 71.7
Cfa008724 Carpinus fangiana HOM05D002225 ORTHO05D002271 8.1e-37 157.1 106 74.5
Duzib268G1460 Durio zibethinus HOM05D002225 ORTHO05D002271 8.1e-37 157.1 106 70.8
Nitab4.5_0007261g0040 Nicotiana tabacum HOM05D002225 ORTHO05D002271 1.4e-36 156.4 106 74.5
Cc10_g11780 Coffea canephora HOM05D002225 ORTHO05D002271 1.8e-36 156.0 108 78.7
COL.COLO4_16616 Corchorus olitorius HOM05D002225 ORTHO05D002271 2.4e-36 155.6 106 70.8
Hma1.2p1_0285F.1_g113930 Hydrangea macrophylla HOM05D002225 ORTHO05D002271 2.4e-36 155.6 106 73.6
MD13G1008400 Malus domestica HOM05D002225 ORTHO05D002271 2.4e-36 155.6 106 72.6
Actinidia04313 Actinidia chinensis HOM05D002225 ORTHO05D002271 3.1e-36 155.2 106 73.6
Nitab4.5_0002113g0120 Nicotiana tabacum HOM05D002225 ORTHO05D002271 3.1e-36 155.2 106 74.5
Psat7g174200 Pisum sativum HOM05D002225 ORTHO05D002271 3.1e-36 155.2 107 72.0
Ciclev10031032m.g Citrus clementina HOM05D002225 ORTHO05D002271 4.0e-36 154.8 106 72.6
MD16G1005900 Malus domestica HOM05D002225 ORTHO05D002271 4.0e-36 154.8 106 72.6
Gohir.D01G138600 Gossypium hirsutum HOM05D002225 ORTHO05D002271 5.3e-36 154.5 106 69.8
Gorai.002G167300 Gossypium raimondii HOM05D002225 ORTHO05D002271 5.3e-36 154.5 106 69.8
MBI03_g05110_MAGBIO Magnolia biondii HOM05D002225 ORTHO05D002271 6.9e-36 154.1 106 73.6
Peaxi162Scf00760g00022 Petunia axillaris HOM05D002225 ORTHO05D002271 6.9e-36 154.1 106 72.6
Haze_11735 Corylus avellana HOM05D002225 ORTHO05D002271 9.0e-36 153.7 106 73.6
CAN.G624.21 Capsicum annuum HOM05D002225 ORTHO05D002271 1.5e-35 152.9 106 72.6
Gohir.A01G146100 Gossypium hirsutum HOM05D002225 ORTHO05D002271 1.5e-35 152.9 107 68.2
Rhsim09G0072600 Rhododendron simsii HOM05D002225 ORTHO05D002271 2.0e-35 152.5 106 71.7
Sopen04g004460 Solanum pennellii HOM05D002225 ORTHO05D002271 2.0e-35 152.5 106 71.7
PGSC0003DMG400032542 Solanum tuberosum HOM05D002225 ORTHO05D002271 2.0e-35 152.5 106 71.7
TAR629G0799 Trochodendron aralioides HOM05D002225 ORTHO05D002271 2.0e-35 152.5 106 70.8
vmacro16008 Vaccinium macrocarpon HOM05D002225 ORTHO05D002271 2.0e-35 152.5 106 71.7
Aqoxy3G04242 Aquilegia oxysepala HOM05D002225 ORTHO05D002271 3.4e-35 151.8 106 73.6
CANSAT64G1256 Cannabis sativa HOM05D002225 ORTHO05D002271 4.5e-35 151.4 106 69.8
ECA234G4283 Erigeron canadensis HOM05D002225 ORTHO05D002271 4.5e-35 151.4 106 70.8
Potri.010G171100 Populus trichocarpa HOM05D002225 ORTHO05D002271 5.8e-35 151.0 106 69.8
PSO063G0669 Papaver somniferum HOM05D002225 ORTHO05D002271 7.6e-35 150.6 106 71.7
PSO782G2120 Papaver somniferum HOM05D002225 ORTHO05D002271 7.6e-35 150.6 106 71.7
Sabra10G0130600 Salix brachista HOM05D002225 ORTHO05D002271 7.6e-35 150.6 106 69.8
Solyc04g009340.3 Solanum lycopersicum HOM05D002225 ORTHO05D002271 7.6e-35 150.6 106 70.8
Atru.BG.278.p Acer truncatum HOM05D002225 ORTHO05D002271 1.0e-34 150.2 106 71.7
Medtr4g074220 Medicago truncatula HOM05D002225 ORTHO05D002271 1.0e-34 150.2 106 70.8
Lalb_Chr19g0139291 Lupinus albus HOM05D002225 ORTHO05D002271 1.7e-34 149.4 106 70.8
PGR044G0003 Punica granatum HOM05D002225 ORTHO05D002271 1.7e-34 149.4 106 66.0
Hund24314 Selenicereus undatus HOM05D002225 ORTHO05D002271 1.7e-34 149.4 106 69.8
Nn4g24911 Nelumbo nucifera HOM05D002225 ORTHO05D002271 2.9e-34 148.7 106 70.8
HanXRQChr01g0028531 Helianthus annuus HOM05D002225 ORTHO05D002271 3.8e-34 148.3 106 71.7
Lj3g0008787 Lotus japonicus HOM05D002225 ORTHO05D002271 3.8e-34 148.3 106 69.8
Ca_03041_v3 Cicer arietinum L. HOM05D002225 ORTHO05D002271 4.9e-34 147.9 107 70.1
TPR.G21565 Trifolium pratense HOM05D002225 ORTHO05D002271 4.9e-34 147.9 106 69.8
ATR0618G231 Amborella trichopoda HOM05D002225 ORTHO05D002271 6.5e-34 147.5 106 67.9
DCAR_026916 Daucus carota HOM05D002225 ORTHO05D002271 1.1e-33 146.7 106 67.9
Glyma.11G104000 Glycine max HOM05D002225 ORTHO05D002271 1.1e-33 146.7 106 69.8
Glyma.12G028900 Glycine max HOM05D002225 ORTHO05D002271 1.1e-33 146.7 106 69.8
Duzib248G1623 Durio zibethinus HOM05D002225 ORTHO05D002271 1.4e-33 146.4 106 67.9
ClCG11G001120 Citrullus lanatus HOM05D002225 ORTHO05D002271 4.2e-33 144.8 106 68.9
Phvul.011G032200 Phaseolus vulgaris HOM05D002225 ORTHO05D002271 4.2e-33 144.8 106 67.9
SEGI_40865 Sequoiadendron giganteum HOM05D002225 ORTHO05D002271 5.5e-33 144.4 106 68.9
CsaV3_5G013170 Cucumis sativus L. HOM05D002225 ORTHO05D002271 7.1e-33 144.1 106 68.9
VMungo1127G1685 Vigna mungo HOM05D002225 ORTHO05D002271 7.1e-33 144.1 106 67.0
Cc03_g14700 Coffea canephora HOM05D002225 ORTHO05D002271 9.3e-33 143.7 119 66.4
MELO3C020035.2 Cucumis melo HOM05D002225 ORTHO05D002271 9.3e-33 143.7 106 68.9
EL10Ac9g22904 Beta vulgaris HOM05D002225 ORTHO05D002271 1.2e-32 143.3 106 69.8
Aa31LG8G6750 Aethionema arabicum HOM05D002225 ORTHO05D002271 1.6e-32 142.9 106 67.9
AUR62012862 Chenopodium quinoa HOM05D002225 ORTHO05D002271 1.6e-32 142.9 106 67.9
Sed0022813 Sechium edule HOM05D002225 ORTHO05D002271 1.6e-32 142.9 106 67.9
AL3G33450 Arabidopsis lyrata HOM05D002225 ORTHO05D002271 2.1e-32 142.5 106 67.0
SGA_v2.0_scaffold258G45747 Striga asiatica HOM05D002225 ORTHO05D002271 2.7e-32 142.1 109 68.8
AUR62017648 Chenopodium quinoa HOM05D002225 ORTHO05D002271 3.5e-32 141.7 106 67.0
A01p34860 Brassica napus HOM05D002225 ORTHO05D002271 4.6e-32 141.4 106 66.0
Thhalv10020435m.g Eutrema salsugineum HOM05D002225 ORTHO05D002271 4.6e-32 141.4 106 66.0
CARHR095420 Cardamine hirsuta HOM05D002225 ORTHO05D002271 6.0e-32 141.0 106 67.0
SalBow2G1711 Salvia bowleyana HOM05D002225 ORTHO05D002271 6.0e-32 141.0 110 68.2
BcaC09g48946 Brassica carinata HOM05D002225 ORTHO05D002271 7.9e-32 140.6 106 65.1
C01p44260 Brassica napus HOM05D002225 ORTHO05D002271 7.9e-32 140.6 106 65.1
BolC1t04386H Brassica oleracea HOM05D002225 ORTHO05D002271 7.9e-32 140.6 106 65.1
Thhalv10023509m.g Eutrema salsugineum HOM05D002225 ORTHO05D002271 7.9e-32 140.6 106 66.0
Sp3g17900 Schrenkiella parvula HOM05D002225 ORTHO05D002271 7.9e-32 140.6 106 65.1
AT3G19895 Arabidopsis thaliana HOM05D002225 ORTHO05D002271 1.0e-31 140.2 106 66.0
CDE05G0641 Ceratophyllum demersum HOM05D002225 ORTHO05D002271 1.0e-31 140.2 106 66.0
Eucgr.J00840 Eucalyptus grandis HOM05D002225 ORTHO05D002271 1.0e-31 140.2 106 67.9
BraA01t03569Z Brassica rapa HOM05D002225 ORTHO05D002271 1.8e-31 139.4 106 65.1
CDE05G2843 Ceratophyllum demersum HOM05D002225 ORTHO05D002271 3.0e-31 138.7 106 64.2
Sc10g0006830 Simmondsia chinensis HOM05D002225 ORTHO05D002271 3.0e-31 138.7 106 67.0
THA.LOC104809148 Tarenaya hassleriana HOM05D002225 ORTHO05D002271 6.7e-31 137.5 106 66.0
Ah.01g013070 Amaranthus hybridus HOM05D002225 ORTHO05D002271 1.5e-30 136.3 106 66.0
AUR62034079 Chenopodium quinoa HOM05D002225 ORTHO05D002271 1.5e-30 136.3 106 65.1
Carub.0003s1979 Capsella rubella HOM05D002225 ORTHO05D002271 2.5e-30 135.6 106 66.0
Glyma.12G159000 Glycine max HOM05D002225 ORTHO05D035072 7.4e-30 134.0 105 65.7
Migut.L00855 Erythranthe guttata HOM05D002225 ORTHO05D002271 1.3e-29 133.3 105 64.8
Migut.L00850 Erythranthe guttata HOM05D002225 ORTHO05D002271 2.8e-29 132.1 105 64.8
Cc00_g29800 Coffea canephora HOM05D002225 ORTHO05D002271 8.2e-29 130.6 111 66.7
THA.LOC104826520 Tarenaya hassleriana HOM05D002225 ORTHO05D002271 1.5e-27 126.3 106 60.4
Lsat_1_v5_gn_4_175760 Lactuca sativa HOM05D002225 ORTHO05D002271 4.5e-27 124.8 106 62.3
Lsat_1_v5_gn_4_26401 Lactuca sativa HOM05D002225 ORTHO05D002271 2.5e-25 119.0 106 62.3
Mapoly0105s0037 Marchantia polymorpha HOM05D002225 ORTHO05D002271 2.7e-24 115.5 106 52.8
Zm00001eb259400 Zea mays HOM05D002225 ORTHO05D002271 1.8e-20 102.8 106 50.9
AagrBONN_evm.TU.Sc2ySwM_368.1356 Anthoceros agrestis HOM05D002225 ORTHO05D002271 6.9e-20 100.9 106 46.2
Pp3c11_2010 Physcomitrium patens HOM05D002225 ORTHO05D002271 1.7e-18 96.3 106 49.1
Pp3c2_29300 Physcomitrium patens HOM05D002225 ORTHO05D002271 1.1e-17 93.6 106 44.3
COL.COLO4_02877 Corchorus olitorius HOM05D002225 ORTHO05D002271 1.6e-16 89.7 57 70.2
SMO228G0155 Selaginella moellendorffii HOM05D002225 ORTHO05D002271 3.0e-15 85.5 109 45.9
unitig_22.g6362 Utricularia gibba HOM05D002225 ORTHO05D002271 5.7e-14 81.3 81 53.1
ATR0568G197 Amborella trichopoda HOM05D002225 ORTHO05D002271 2.6e-11 72.4 105 40.0
PGSC0003DMG400019002 Solanum tuberosum HOM05D002225 ORTHO05D002271 2.6e-11 72.4 74 54.1
Mapoly0052s0101 Marchantia polymorpha HOM05D001622 ORTHO05D007320 1.7e-10 69.7 107 37.4
Pp3c10_7420 Physcomitrium patens HOM05D001622 ORTHO05D007320 1.4e-09 66.6 107 34.6
Pp3c14_8770 Physcomitrium patens HOM05D001622 ORTHO05D007320 1.9e-09 66.2 111 34.2
Gohir.A01G039300 Gossypium hirsutum HOM05D001622 ORTHO05D007320 2.5e-09 65.9 109 37.6
Gohir.D01G027000 Gossypium hirsutum HOM05D001622 ORTHO05D007320 3.2e-09 65.5 109 37.6
Gorai.002G036400 Gossypium raimondii HOM05D001622 ORTHO05D007320 3.2e-09 65.5 109 37.6
Pp3c1_30960 Physcomitrium patens HOM05D001622 ORTHO05D007320 7.2e-09 64.3 107 32.7
SHI21454 Sapria himalayana HOM05D001622 ORTHO05D007320 7.2e-09 64.3 109 35.8
ATR0763G216 Amborella trichopoda HOM05D001622 ORTHO05D007320 1.2e-08 63.5 107 41.1
Lsat_1_v5_gn_7_112141 Lactuca sativa HOM05D001622 ORTHO05D007320 1.6e-08 63.2 107 36.4
DCAR_009640 Daucus carota HOM05D001622 ORTHO05D007320 4.7e-08 61.6 109 36.7
Gorai.007G335700 Gossypium raimondii HOM05D001622 ORTHO05D007320 4.7e-08 61.6 111 36.9
QL04p073268 Quercus lobata HOM05D001622 ORTHO05D007320 6.1e-08 61.2 107 35.5
Gohir.A11G291600 Gossypium hirsutum HOM05D001622 ORTHO05D007320 1.0e-07 60.5 111 36.9
arahy.Tifrunner.gnm1.ann1.WY48MC Arachis hypogaea HOM05D001622 ORTHO05D007320 1.4e-07 60.1 110 34.5
Aqoxy3G00134 Aquilegia oxysepala HOM05D001622 ORTHO05D007320 1.8e-07 59.7 109 37.6
MBI06_g27718_MAGBIO Magnolia biondii HOM05D002225 ORTHO05D002271 1.8e-07 59.7 28 92.9
Dinv42510 Davidia involucrata HOM05D001622 ORTHO05D007320 2.3e-07 59.3 109 35.8
GSVIVG01020422001 Vitis vinifera HOM05D001622 ORTHO05D007320 2.3e-07 59.3 109 35.8
Migut.H01694 Erythranthe guttata HOM05D001622 ORTHO05D007320 6.7e-07 57.8 109 36.7
Oeu052005.1 Olea europaea HOM05D001622 ORTHO05D007320 6.7e-07 57.8 109 34.9
Rhsim06G0238900 Rhododendron simsii HOM05D001622 ORTHO05D007320 6.7e-07 57.8 107 35.5
CSS0015787 Camellia sinensis var. sinensis HOM05D001622 ORTHO05D007320 8.8e-07 57.4 107 35.5
CSS0023682 Camellia sinensis var. sinensis HOM05D001622 ORTHO05D007320 8.8e-07 57.4 107 35.5
Cc05_g16070 Coffea canephora HOM05D001622 ORTHO05D007320 8.8e-07 57.4 109 35.8
Dinv19618 Davidia involucrata HOM05D001622 ORTHO05D007320 8.8e-07 57.4 109 35.8
SalBow1G8023 Salvia bowleyana HOM05D001622 ORTHO05D007320 8.8e-07 57.4 107 34.6
SGA_v2.0_scaffold713G53504 Striga asiatica HOM05D001622 ORTHO05D007320 8.8e-07 57.4 109 36.7
Peaxi162Scf00452g00834 Petunia axillaris HOM05D001622 ORTHO05D007320 1.1e-06 57.0 109 34.9
Pp3c2_6360 Physcomitrium patens HOM05D001622 ORTHO05D007320 1.1e-06 57.0 107 29.9
HPP92_001849 Vanilla planifolia HOM05D001622 ORTHO05D007320 1.1e-06 57.0 104 35.6
CAN.G943.38 Capsicum annuum HOM05D001622 ORTHO05D007320 2.0e-06 56.2 109 35.8
Lj4A318T19 Lonicera japonica HOM05D001622 ORTHO05D007320 2.0e-06 56.2 109 34.9
Solyc07g066450.4 Solanum lycopersicum HOM05D001622 ORTHO05D007320 2.0e-06 56.2 109 34.9
Sopen07g034630 Solanum pennellii HOM05D001622 ORTHO05D007320 2.0e-06 56.2 109 34.9
Nitab4.5_0001080g0040 Nicotiana tabacum HOM05D001622 ORTHO05D007320 2.6e-06 55.8 109 35.8
PGSC0003DMG400022235 Solanum tuberosum HOM05D001622 ORTHO05D007320 3.3e-06 55.5 109 33.9
Nitab4.5_0001749g0020 Nicotiana tabacum HOM05D001622 ORTHO05D007320 4.4e-06 55.1 109 33.9
Sabra11G0127900 Salix brachista HOM05D001622 ORTHO05D007320 5.7e-06 54.7 107 34.6
MSTRG.15021 Avicennia marina HOM05D001622 ORTHO05D007320 7.4e-06 54.3 107 33.6
Sc20g0002900 Simmondsia chinensis HOM05D001622 ORTHO05D007320 9.7e-06 53.9 107 33.6


User provided reference genes

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