Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 4.7e-103 377.9 189 100.0
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.6e-79 299.7 189 76.7
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 1.6e-79 299.7 186 76.9
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 4.7e-79 298.1 189 75.7
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 4.7e-79 298.1 189 75.7
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 4.7e-79 298.1 189 75.7
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 6.1e-79 297.7 189 76.2
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 5.7e-77 291.2 189 75.1
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 1.7e-76 289.7 189 73.0
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 2.8e-76 288.9 189 74.1
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 6.3e-76 287.7 186 75.3
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 6.3e-76 287.7 186 75.3
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 1.8e-75 286.2 204 69.6
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 1.6e-74 283.1 186 73.1
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.6e-74 283.1 188 72.9
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.6e-74 283.1 188 72.9
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 1.6e-74 283.1 187 73.8
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 2.7e-74 282.3 186 73.7
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 5.9e-74 281.2 188 73.4
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 1.0e-73 280.4 185 75.1
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 1.3e-73 280.0 187 72.7
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 2.9e-73 278.9 187 74.9
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 3.8e-73 278.5 185 74.6
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 6.6e-73 277.7 182 72.0
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 6.6e-73 277.7 182 72.0
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 1.5e-72 276.6 187 72.2
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 1.5e-72 276.6 184 70.1
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 1.5e-72 276.6 184 75.0
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 7.3e-72 274.2 184 69.6
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 7.3e-72 274.2 189 69.8
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 9.5e-72 273.9 184 69.6
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 1.2e-71 273.5 191 72.3
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 3.6e-71 271.9 186 69.9
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 4.7e-71 271.6 189 68.8
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 6.1e-71 271.2 189 70.4
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 8.0e-71 270.8 182 72.5
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 8.0e-71 270.8 186 70.4
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 8.0e-71 270.8 186 73.7
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 8.0e-71 270.8 189 69.8
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 1.0e-70 270.4 207 67.1
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 2.3e-70 269.2 186 72.0
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 3.1e-70 268.9 186 68.8
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 4.0e-70 268.5 207 67.1
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 5.2e-70 268.1 189 70.4
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 5.2e-70 268.1 184 68.5
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 6.8e-70 267.7 189 68.8
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 8.9e-70 267.3 189 69.3
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.2e-69 266.9 187 69.5
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.6e-69 265.8 189 71.4
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 2.6e-69 265.8 189 71.4
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 4.4e-69 265.0 189 67.2
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 5.8e-69 264.6 184 69.0
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.3e-68 263.5 182 69.8
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 2.2e-68 262.7 187 71.7
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 2.9e-68 262.3 184 70.1
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.7e-68 261.9 189 70.4
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 3.7e-68 261.9 187 69.5
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.4e-67 260.0 189 70.4
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 1.9e-67 259.6 185 64.9
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 2.4e-67 259.2 189 69.3
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 4.1e-67 258.5 189 67.2
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 2.0e-66 256.1 189 67.2
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 2.7e-66 255.8 184 66.3
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.7e-66 255.8 186 68.8
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 2.7e-66 255.8 190 67.4
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 3.5e-66 255.4 189 65.6
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 4.6e-66 255.0 189 66.7
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 7.8e-66 254.2 189 65.6
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 1.0e-65 253.8 188 68.6
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.3e-65 253.4 203 64.0
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.3e-65 253.4 178 71.3
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.7e-65 253.1 186 68.8
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.3e-65 252.7 186 69.4
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 2.3e-65 252.7 175 69.7
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 3.9e-65 251.9 189 65.6
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 8.6e-65 250.8 182 66.5
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.1e-64 250.4 203 63.1
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 1.1e-64 250.4 189 65.1
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 1.5e-64 250.0 152 79.6
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 1.5e-64 250.0 189 63.5
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 4.3e-64 248.4 177 70.1
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 4.3e-64 248.4 186 64.0
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 5.6e-64 248.1 184 63.6
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 1.2e-63 246.9 176 66.5
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 8.0e-63 244.2 212 61.3
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 1.1e-62 243.8 190 63.2
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 1.8e-62 243.0 189 64.0
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 6.8e-62 241.1 182 63.7
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 8.9e-62 240.7 189 64.0
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 1.5e-61 240.0 189 63.5
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 2.0e-61 239.6 188 61.7
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 4.4e-61 238.4 185 62.7
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 5.8e-61 238.0 271 49.8
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 2.9e-60 235.7 183 60.7
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 3.7e-60 235.3 159 71.7
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 1.6e-58 229.9 182 61.0
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.9e-56 223.0 165 69.1
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 2.5e-56 222.6 185 59.5
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 2.5e-56 222.6 186 58.6
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 9.5e-56 220.7 157 68.2
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 8.1e-55 217.6 178 57.9
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 6.0e-50 201.4 184 54.9
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 1.3e-49 200.3 207 53.6
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 2.3e-49 199.5 184 53.8
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 8.6e-49 197.6 184 53.8
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 8.6e-49 197.6 184 53.3
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 5.6e-48 194.9 184 53.8
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 7.3e-48 194.5 184 52.7
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 3.1e-46 189.1 184 52.7
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 6.8e-46 188.0 182 56.6
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 2.6e-45 186.0 184 51.1
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 2.2e-44 183.0 184 51.1
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 8.4e-44 181.0 172 58.7
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 3.2e-43 179.1 184 49.5
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 9.2e-43 177.6 184 48.9
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 9.2e-43 177.6 184 48.9
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 9.2e-43 177.6 184 48.9
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 1.0e-41 174.1 184 48.4
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 2.3e-41 172.9 142 58.5
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 2.3e-41 172.9 142 58.5
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 2.8e-39 166.0 148 55.4
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.4e-38 162.9 106 78.3
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.9e-36 156.0 155 58.1
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 2.3e-33 146.4 148 52.0
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.5e-29 133.7 113 61.9
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 1.7e-28 130.2 78 75.6
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 1.5e-24 117.1 86 68.6
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 9.0e-22 107.8 73 68.5
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.5e-21 107.1 79 67.1
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.0e-21 106.7 87 57.5
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 2.2e-20 103.2 84 59.5
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 6.4e-20 101.7 155 37.4
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 9.3e-19 97.8 151 39.1
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.0e-17 94.4 76 56.6
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.3e-17 94.0 81 55.6
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.3e-17 94.0 76 56.6
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 2.3e-17 93.2 71 69.0
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 6.7e-17 91.7 165 30.3
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 3.3e-16 89.4 118 39.0
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.7e-12 77.0 60 65.0
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 4.9e-12 75.5 80 50.0
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.9e-11 73.6 91 51.6
Zm00001eb076020 Zea mays HOM05D005262 ORTHO05D444176 3.7e-07 59.3 45 62.2


User provided reference genes

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