Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g16610 Coffea canephora HOM05D006399 ORTHO05D007988 9.1e-281 969.5 476 100.0
Dinv34129 Davidia involucrata HOM05D006399 ORTHO05D007988 4.2e-185 651.7 493 65.1
Oeu005762.1 Olea europaea HOM05D006399 ORTHO05D007988 1.8e-172 609.8 485 62.9
CSS0033869 Camellia sinensis var. sinensis HOM05D006399 ORTHO05D007988 1.2e-171 607.1 495 62.2
Nitab4.5_0000145g0020 Nicotiana tabacum HOM05D006399 ORTHO05D007988 1.2e-171 607.1 480 62.7
Actinidia17748 Actinidia chinensis HOM05D006399 ORTHO05D007988 1.7e-170 603.2 492 61.4
Rhsim12G0079500 Rhododendron simsii HOM05D006399 ORTHO05D007988 2.9e-170 602.4 488 63.5
Haze_11970 Corylus avellana HOM05D006399 ORTHO05D007988 2.2e-165 586.3 496 60.9
Nitab4.5_0004661g0030 Nicotiana tabacum HOM05D006399 ORTHO05D007988 3.7e-165 585.5 394 69.8
TAR622G1196 Trochodendron aralioides HOM05D006399 ORTHO05D007988 8.3e-165 584.3 480 61.2
Actinidia31971 Actinidia chinensis HOM05D006399 ORTHO05D007988 2.0e-163 579.7 486 59.1
CiPaw.05G130700 Carya illinoinensis HOM05D006399 ORTHO05D007988 2.0e-163 579.7 494 59.7
DCAR_007171 Daucus carota HOM05D006399 ORTHO05D007988 3.5e-163 578.9 472 61.2
Cfa008944 Carpinus fangiana HOM05D006399 ORTHO05D007988 7.7e-163 577.8 502 59.6
Aqoxy3G00634 Aquilegia oxysepala HOM05D006399 ORTHO05D007988 1.0e-162 577.4 463 63.1
PGSC0003DMG400018440 Solanum tuberosum HOM05D006399 ORTHO05D007988 7.2e-161 571.2 473 61.5
Thecc.02G341500 Theobroma cacao HOM05D006399 ORTHO05D007988 1.3e-157 560.5 490 57.3
CAN.G1335.8 Capsicum annuum HOM05D006399 ORTHO05D007988 4.9e-157 558.5 475 60.8
Gorai.013G088500 Gossypium raimondii HOM05D006399 ORTHO05D007988 2.4e-156 556.2 484 57.2
Manes.05G105200 Manihot esculenta HOM05D006399 ORTHO05D007988 1.2e-155 553.9 492 57.9
Sopen05g003560 Solanum pennellii HOM05D006399 ORTHO05D007988 1.2e-155 553.9 472 59.7
Peaxi162Scf00222g00816 Petunia axillaris HOM05D006399 ORTHO05D007988 4.5e-155 552.0 471 59.4
Solyc05g007680.1 Solanum lycopersicum HOM05D006399 ORTHO05D007988 5.9e-155 551.6 472 59.5
Gohir.D13G077400 Gossypium hirsutum HOM05D006399 ORTHO05D007988 3.8e-154 548.9 483 56.9
Sabra08G0067200 Salix brachista HOM05D006399 ORTHO05D007988 3.8e-154 548.9 505 56.2
Atru.chr11.1740 Acer truncatum HOM05D006399 ORTHO05D007988 5.6e-153 545.0 504 58.3
Potri.008G089800 Populus trichocarpa HOM05D006399 ORTHO05D007988 1.6e-152 543.5 506 55.5
Duzib248G1019 Durio zibethinus HOM05D006399 ORTHO05D007988 2.1e-152 543.1 499 55.3
Cfa008945 Carpinus fangiana HOM05D006399 ORTHO05D007988 4.7e-152 542.0 461 59.2
RcHm_v2.0_Chr4g0439341 Rosa chinensis HOM05D006399 ORTHO05D007988 1.2e-150 537.3 483 55.3
unitig_699.g19915 Utricularia gibba HOM05D006399 ORTHO05D007988 1.5e-150 537.0 436 61.0
FAN07G1460 Fragaria x ananassa HOM05D006399 ORTHO05D007988 3.4e-150 535.8 481 55.5
Cpa.g.sc1.57 Carica papaya HOM05D006399 ORTHO05D007988 7.5e-150 534.6 493 56.0
CiPaw.06G087600 Carya illinoinensis HOM05D006399 ORTHO05D007988 9.8e-150 534.3 443 60.3
PSO210G1214 Papaver somniferum HOM05D006399 ORTHO05D007988 3.7e-149 532.3 486 58.8
Nn3g17286 Nelumbo nucifera HOM05D006399 ORTHO05D007988 4.9e-149 531.9 491 56.8
Nn3g17302 Nelumbo nucifera HOM05D006399 ORTHO05D007988 4.9e-149 531.9 491 56.8
CANSAT64G0537 Cannabis sativa HOM05D006399 ORTHO05D007988 6.4e-149 531.6 490 56.9
Glyma.02G110300 Glycine max HOM05D006399 ORTHO05D007988 6.4e-149 531.6 485 56.5
GSVIVG01005154001 Vitis vinifera HOM05D006399 ORTHO05D007988 8.3e-149 531.2 475 57.1
Lalb_Chr04g0255911 Lupinus albus HOM05D006399 ORTHO05D007988 1.1e-148 530.8 510 56.3
FvH4_4g30980 Fragaria vesca HOM05D006399 ORTHO05D007988 5.4e-148 528.5 479 55.7
FAN12G0639 Fragaria x ananassa HOM05D006399 ORTHO05D007988 1.6e-147 526.9 475 55.8
HanXRQChr15g0476901 Helianthus annuus HOM05D006399 ORTHO05D007988 1.6e-147 526.9 450 58.9
Haze_11971 Corylus avellana HOM05D006399 ORTHO05D007988 2.0e-147 526.6 491 55.4
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 2.7e-147 526.2 363 68.6
Lsat_1_v5_gn_3_51980 Lactuca sativa HOM05D006399 ORTHO05D007988 4.6e-147 525.4 487 57.1
MD16G1068900 Malus domestica HOM05D006399 ORTHO05D007988 4.6e-147 525.4 492 55.3
CSS0044828 Camellia sinensis var. sinensis HOM05D006399 ORTHO05D007988 7.8e-147 524.6 447 60.0
Migut.L01261 Erythranthe guttata HOM05D006399 ORTHO05D007988 1.7e-146 523.5 462 57.6
Ca_04827_v3 Cicer arietinum L. HOM05D006399 ORTHO05D007988 2.5e-145 519.6 491 55.6
Dinv07949 Davidia involucrata HOM05D006399 ORTHO05D007988 3.3e-145 519.2 467 57.6
Psat2g116280 Pisum sativum HOM05D006399 ORTHO05D007988 4.3e-145 518.8 373 64.3
QL12p039367 Quercus lobata HOM05D006399 ORTHO05D007988 5.6e-145 518.5 456 57.9
Dinv34130 Davidia involucrata HOM05D006399 ORTHO05D007988 2.1e-144 516.5 478 56.7
Prupe.1G278300 Prunus persica HOM05D006399 ORTHO05D007988 3.6e-144 515.8 505 53.7
Eucgr.B03205 Eucalyptus grandis HOM05D006399 ORTHO05D007988 1.0e-143 514.2 474 55.5
QL03p069077 Quercus lobata HOM05D006399 ORTHO05D007988 1.0e-143 514.2 487 54.6
Phvul.003G046500 Phaseolus vulgaris HOM05D006399 ORTHO05D007988 1.4e-143 513.8 499 52.9
QL93p1999_0143 Quercus lobata HOM05D006399 ORTHO05D007988 4.0e-143 512.3 487 54.2
Lj2g0004295 Lotus japonicus HOM05D006399 ORTHO05D007988 2.0e-142 510.0 506 53.4
VMungo1215G0113 Vigna mungo HOM05D006399 ORTHO05D007988 2.0e-142 510.0 499 53.5
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 2.6e-142 509.6 387 63.0
Medtr5g042100 Medicago truncatula HOM05D006399 ORTHO05D007988 1.3e-141 507.3 432 57.6
FvH4_4g30990 Fragaria vesca HOM05D006399 ORTHO05D007988 1.7e-141 506.9 477 57.9
Glyma.01G052300 Glycine max HOM05D006399 ORTHO05D007988 2.9e-141 506.1 508 51.8
TPR.G34705 Trifolium pratense HOM05D006399 ORTHO05D007988 6.4e-141 505.0 498 54.0
Atru.chr11.1742 Acer truncatum HOM05D006399 ORTHO05D007988 8.3e-141 504.6 497 54.7
FAN12G2051 Fragaria x ananassa HOM05D006399 ORTHO05D007988 1.9e-140 503.4 477 57.7
RcHm_v2.0_Chr4g0439361 Rosa chinensis HOM05D006399 ORTHO05D007988 1.9e-140 503.4 477 56.8
FAN07G2088 Fragaria x ananassa HOM05D006399 ORTHO05D007988 7.0e-140 501.5 477 57.4
Eucgr.G02484 Eucalyptus grandis HOM05D006399 ORTHO05D007988 1.0e-138 497.7 497 51.9
FAN22G0994 Fragaria x ananassa HOM05D006399 ORTHO05D007988 1.0e-138 497.7 475 55.6
THA.LOC104808694 Tarenaya hassleriana HOM05D006399 ORTHO05D007988 4.3e-137 492.3 448 57.4
QL12p039232 Quercus lobata HOM05D006399 ORTHO05D007988 2.8e-136 489.6 464 54.5
PGR102G0590 Punica granatum HOM05D006399 ORTHO05D007988 2.3e-135 486.5 494 51.4
Sp1g22040 Schrenkiella parvula HOM05D006399 ORTHO05D007988 3.1e-135 486.1 456 53.9
AT1G26761 Arabidopsis thaliana HOM05D006399 ORTHO05D007988 4.0e-135 485.7 383 62.1
AL1G38940 Arabidopsis lyrata HOM05D006399 ORTHO05D007988 4.9e-133 478.8 400 59.0
Manes.01G033900 Manihot esculenta HOM05D006399 ORTHO05D007988 4.9e-133 478.8 462 55.0
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 6.4e-133 478.4 481 54.7
Thhalv10007591m.g Eutrema salsugineum HOM05D006399 ORTHO05D007988 8.3e-133 478.0 439 55.6
PGR102G2002 Punica granatum HOM05D006399 ORTHO05D007988 1.4e-132 477.2 459 53.8
Ah.02g129470 Amaranthus hybridus HOM05D006399 ORTHO05D007988 7.1e-132 474.9 493 50.3
EL10Ac6g13248 Beta vulgaris HOM05D006399 ORTHO05D007988 4.6e-131 472.2 464 54.5
BraA09t39516Z Brassica rapa HOM05D006399 ORTHO05D007988 7.8e-131 471.5 442 55.0
A09p40180 Brassica napus HOM05D006399 ORTHO05D007988 1.7e-130 470.3 377 60.2
Aa31LG7G8360 Aethionema arabicum HOM05D006399 ORTHO05D007988 3.9e-130 469.2 390 58.2
CDE06G2322 Ceratophyllum demersum HOM05D006399 ORTHO05D007988 8.6e-130 468.0 383 60.3
Carub.0001s2425 Capsella rubella HOM05D006399 ORTHO05D007988 1.1e-129 467.6 400 58.2
BcaC05g26389 Brassica carinata HOM05D006399 ORTHO05D007988 4.7e-128 462.2 439 55.1
C05p24200 Brassica napus HOM05D006399 ORTHO05D007988 4.7e-128 462.2 439 55.1
BolC5t31156H Brassica oleracea HOM05D006399 ORTHO05D007988 4.7e-128 462.2 439 55.1
ATR0564G327 Amborella trichopoda HOM05D006399 ORTHO05D007988 6.8e-127 458.4 455 53.4
GSVIVG01005153001 Vitis vinifera HOM05D006399 ORTHO05D007988 7.6e-126 454.9 485 50.3
CiPaw.05G130800 Carya illinoinensis HOM05D006399 ORTHO05D007988 1.9e-124 450.3 462 52.8
SEGI_38638 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 1.6e-123 447.2 423 51.3
CARHR025180 Cardamine hirsuta HOM05D006399 ORTHO05D007988 1.3e-122 444.1 396 55.3
Pp3c5_14870 Physcomitrium patens HOM05D006399 ORTHO05D007988 5.6e-105 385.6 410 45.9
MSTRG.719 Avicennia marina HOM05D006399 ORTHO05D007988 3.5e-91 339.7 332 54.2
FAN22G2397 Fragaria x ananassa HOM05D006399 ORTHO05D007988 3.9e-90 336.3 470 41.7
Os08g0433300 Oryza sativa ssp. japonica HOM05D006399 ORTHO05D007988 1.8e-82 310.8 348 46.3
SalBow2G2517 Salvia bowleyana HOM05D006399 ORTHO05D007988 1.8e-82 310.8 210 68.1
AUR62032821 Chenopodium quinoa HOM05D006399 ORTHO05D007988 6.3e-80 302.4 246 59.3
Zm00001eb041520 Zea mays HOM05D006399 ORTHO05D007988 2.6e-78 297.0 340 45.9
MBI05_g36409_MAGBIO Magnolia biondii HOM05D006399 ORTHO05D007988 3.4e-78 296.6 251 56.2
Cre06.g273050 Chlamydomonas reinhardtii HOM05D006399 ORTHO05D007988 5.3e-71 272.7 385 39.7
Ciclev10032022m.g Citrus clementina HOM05D006399 ORTHO05D007988 1.3e-69 268.1 489 37.2
Lj7C251T2 Lonicera japonica HOM05D006399 ORTHO05D007988 2.9e-61 240.4 298 45.3
PRCOL_00004009 Prasinoderma coloniale HOM05D006399 ORTHO05D007988 1.1e-55 221.9 387 35.9
COL.COLO4_27992 Corchorus olitorius HOM05D006399 ORTHO05D007988 1.2e-43 181.8 228 46.9
Lj7P254T18 Lonicera japonica HOM05D006399 ORTHO05D007988 1.4e-34 151.8 111 64.9
CDE02G1760 Ceratophyllum demersum HOM05D006399 ORTHO05D007988 7.5e-33 146.0 129 58.9
TWI75G1459 Tripterygium wilfordii HOM05D006399 ORTHO05D007988 1.1e-31 142.1 176 46.6
Pp3c9_20180 Physcomitrium patens HOM05D006399 ORTHO05D007988 3.5e-30 137.1 466 28.3
SEGI_07124 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 1.0e-29 135.6 322 35.7
Pp3c11_9510 Physcomitrium patens HOM05D006399 ORTHO05D007988 1.3e-29 135.2 411 30.4
SEGI_31378 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 1.7e-29 134.8 421 29.7
AagrBONN_evm.TU.Sc2ySwM_362.1792 Anthoceros agrestis HOM05D006399 ORTHO05D007988 2.3e-29 134.4 366 30.1
Pp3c2_5840 Physcomitrium patens HOM05D006399 ORTHO05D007988 1.1e-20 105.5 257 33.9
Hma1.2p1_0235F.1_g098770 Hydrangea macrophylla HOM05D006399 ORTHO05D007988 1.5e-20 105.1 53 84.9
SGA_v2.0_scaffold109G31082 Striga asiatica HOM05D006399 ORTHO05D007988 3.8e-08 63.9 59 54.2


User provided reference genes

Program Settings