Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 9.7e-222 773.5 482 100.0
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 9.1e-111 404.8 481 56.1
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 2.2e-109 400.2 455 58.2
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 6.5e-109 398.7 475 57.9
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 4.7e-107 392.5 492 54.5
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 8.0e-107 391.7 491 55.2
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 6.7e-106 388.7 507 53.3
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.6e-105 386.7 486 56.6
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 1.7e-104 384.0 483 53.2
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 1.7e-104 384.0 495 53.9
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 2.8e-104 383.3 365 65.8
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 3.7e-104 382.9 349 62.5
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 8.2e-104 381.7 329 68.1
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 8.2e-104 381.7 493 56.0
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 8.2e-104 381.7 491 54.8
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.4e-103 380.9 480 49.4
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.4e-103 380.2 485 55.3
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 4.1e-103 379.4 478 52.9
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 5.3e-103 379.0 485 53.4
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 7.0e-103 378.6 488 52.9
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 1.2e-102 377.9 507 51.9
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 3.5e-102 376.3 528 50.4
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 7.7e-102 375.2 507 52.3
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 1.0e-101 374.8 490 53.5
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 1.3e-101 374.4 257 75.5
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 2.2e-101 373.6 250 76.0
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 3.8e-101 372.9 493 50.5
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 5.0e-101 372.5 364 62.1
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 6.5e-101 372.1 491 53.8
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 1.1e-100 371.3 250 75.6
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 1.5e-100 370.9 250 75.2
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 1.9e-100 370.5 486 54.9
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 2.5e-100 370.2 242 80.2
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 4.2e-100 369.4 275 72.7
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 9.4e-100 368.2 362 65.2
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.2e-99 367.9 258 75.6
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 2.1e-99 367.1 244 76.2
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.1e-99 367.1 267 73.8
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 2.7e-99 366.7 258 74.0
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 2.7e-99 366.7 240 77.1
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 2.7e-99 366.7 484 52.7
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 3.6e-99 366.3 260 74.2
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 3.6e-99 366.3 260 74.2
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 6.1e-99 365.5 485 52.4
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 6.1e-99 365.5 259 72.6
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 1.0e-98 364.8 246 77.2
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.0e-98 364.8 508 54.9
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 1.8e-98 364.0 360 66.9
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 1.8e-98 364.0 485 54.8
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 1.8e-98 364.0 478 50.4
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.3e-98 363.6 485 53.0
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 3.0e-98 363.2 357 61.3
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 3.0e-98 363.2 485 50.3
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 4.0e-98 362.8 359 66.0
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.5e-97 360.9 489 50.5
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.0e-97 360.5 522 51.5
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 2.0e-97 360.5 248 73.8
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 2.6e-97 360.1 244 74.6
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 3.4e-97 359.8 363 63.6
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 4.4e-97 359.4 512 51.0
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.4e-97 359.4 255 72.5
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 5.7e-97 359.0 260 73.1
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 5.7e-97 359.0 394 62.9
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 9.7e-97 358.2 481 55.7
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 1.7e-96 357.5 258 72.9
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 2.8e-96 356.7 258 72.9
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 2.8e-96 356.7 488 52.0
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 4.8e-96 355.9 263 70.7
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 6.3e-96 355.5 488 51.4
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 8.3e-96 355.1 481 54.1
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 1.1e-95 354.8 492 54.5
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 2.4e-95 353.6 357 63.0
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 5.3e-95 352.4 245 73.5
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 5.3e-95 352.4 245 73.5
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 7.0e-95 352.1 490 55.5
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 1.2e-94 351.3 337 63.8
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 4.5e-94 349.4 338 60.1
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.0e-93 348.2 449 55.0
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.0e-93 348.2 453 55.6
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 1.0e-93 348.2 410 55.4
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 1.3e-93 347.8 372 56.7
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 5.0e-93 345.9 408 55.9
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 6.5e-93 345.5 487 53.4
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.5e-92 344.4 405 53.6
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.9e-92 344.0 415 54.9
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 4.2e-92 342.8 537 48.8
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 5.5e-92 342.4 465 52.5
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 5.5e-92 342.4 405 53.8
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 7.2e-92 342.0 263 69.6
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 3.6e-91 339.7 365 62.2
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 3.6e-91 339.7 269 66.2
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 4.7e-91 339.3 479 50.1
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.3e-90 337.0 283 64.0
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.3e-90 337.0 283 64.7
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 3.4e-89 333.2 519 49.3
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 4.4e-89 332.8 241 71.4
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 9.8e-89 331.6 485 53.0
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 1.3e-88 331.3 252 69.8
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.3e-88 331.3 248 68.5
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 3.7e-88 329.7 245 71.4
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 3.7e-88 329.7 356 57.6
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 1.1e-87 328.2 468 51.9
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 2.7e-86 323.6 350 60.3
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 5.9e-86 322.4 369 53.7
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 5.9e-86 322.4 231 69.3
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 1.3e-85 321.2 243 67.5
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 2.3e-85 320.5 476 47.3
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 1.1e-84 318.2 387 53.7
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 1.9e-84 317.4 253 64.8
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 1.9e-84 317.4 437 51.5
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 1.2e-83 314.7 246 67.1
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 2.8e-83 313.5 213 77.9
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 1.0e-82 311.6 228 68.4
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 6.3e-80 302.4 222 67.1
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.4e-79 301.2 230 68.3
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 3.1e-74 283.5 337 52.2
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 2.6e-73 280.4 473 47.4
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 3.9e-69 266.5 251 55.0
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 1.3e-56 224.9 256 47.7
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 8.1e-51 205.7 237 47.3
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 3.8e-48 196.8 260 44.2
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 2.1e-46 191.0 258 40.3
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 5.1e-45 186.4 247 44.9
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 1.1e-44 185.3 228 42.1
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 6.9e-42 176.0 112 79.5
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 4.6e-38 163.3 261 38.3
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 3.9e-37 160.2 228 41.2
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.1e-36 158.7 133 60.2
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 6.9e-34 149.4 234 35.9
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 4.2e-31 140.2 214 40.2
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.6e-30 138.3 215 38.6
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 2.7e-30 137.5 308 44.5
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 3.5e-30 137.1 86 74.4
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.5e-28 131.7 211 36.0
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 1.5e-25 121.7 226 32.3
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 7.6e-25 119.4 325 38.8
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 1.0e-24 119.0 226 31.9
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 2.2e-24 117.9 163 42.9
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 8.4e-24 115.9 208 36.5
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 2.6e-17 94.4 126 45.2
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 1.9e-15 88.2 131 40.5
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 2.1e-14 84.7 221 30.8
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 1.3e-11 75.5 43 69.8
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 1.3e-11 75.5 158 43.7
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 1.6e-11 75.1 93 48.4
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 2.8e-11 74.3 93 44.1
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 4.8e-11 73.6 106 42.5
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 6.3e-11 73.2 92 42.4
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 6.3e-11 73.2 56 55.4
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 9.0e-10 69.3 175 32.0
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 7.7e-09 66.2 130 34.6
Zm00001eb394500 Zea mays HOM05D002775 ORTHO05D005562 1.9e-07 61.6 54 51.9


User provided reference genes

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