Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 7.0e-136 487.3 242 100.0
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 2.3e-102 375.9 210 91.0
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 4.3e-61 238.8 239 56.1
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 4.8e-60 235.3 248 52.4
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 1.8e-59 233.4 240 55.8
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 7.6e-58 228.0 241 52.7
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.0e-57 227.6 239 54.4
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 6.5e-57 224.9 240 51.7
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 1.4e-56 223.8 238 51.7
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 5.5e-56 221.9 241 53.1
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.7e-55 219.5 238 53.4
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 4.6e-55 218.8 242 51.7
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 6.1e-55 218.4 243 52.7
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 3.9e-54 215.7 237 50.6
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.1e-53 214.2 242 52.1
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 4.8e-52 208.8 242 49.2
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 6.3e-52 208.4 237 48.5
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 1.7e-49 200.3 241 49.0
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 2.9e-49 199.5 246 50.8
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 3.8e-49 199.1 242 51.2
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 5.0e-49 198.7 252 46.8
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 3.2e-48 196.1 242 49.2
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.0e-45 186.8 237 49.4
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 2.5e-45 186.4 239 47.7
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 5.7e-45 185.3 242 47.5
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 9.7e-45 184.5 244 45.1
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 1.1e-43 181.0 265 45.3
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 1.4e-43 180.6 240 46.2
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 1.5e-42 177.2 243 46.9
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.6e-42 176.4 244 45.1
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 3.4e-42 176.0 244 45.1
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 5.9e-42 175.3 242 44.6
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 1.0e-41 174.5 242 47.9
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.3e-41 174.1 240 47.5
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 2.2e-41 173.3 242 45.5
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 5.0e-41 172.2 201 52.7
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 6.5e-41 171.8 256 43.8
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 1.1e-40 171.0 250 46.4
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.9e-40 170.2 244 44.3
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 2.5e-40 169.9 250 46.0
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 5.5e-40 168.7 252 43.7
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 7.2e-40 168.3 241 43.6
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 9.4e-40 167.9 245 43.7
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 1.2e-39 167.5 253 44.7
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 4.7e-39 165.6 245 45.7
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 4.7e-39 165.6 244 44.3
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 3.0e-38 162.9 247 46.2
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 3.9e-38 162.5 259 42.9
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 5.1e-38 162.2 246 43.1
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 6.7e-38 161.8 241 42.3
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 1.1e-37 161.0 259 43.2
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.5e-37 160.6 250 46.4
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 2.6e-37 159.8 255 42.0
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 4.4e-37 159.1 241 43.6
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 4.4e-37 159.1 256 43.4
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 5.7e-37 158.7 242 43.8
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 2.2e-36 156.8 242 43.0
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 2.2e-36 156.8 254 43.3
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 2.8e-36 156.4 237 42.6
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 3.7e-36 156.0 240 43.8
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 3.7e-36 156.0 246 45.5
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 8.2e-36 154.8 252 42.1
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 8.2e-36 154.8 275 42.2
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 1.1e-35 154.5 245 43.3
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 1.4e-35 154.1 242 43.0
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 4.1e-35 152.5 253 42.3
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 1.6e-34 150.6 239 43.1
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 2.0e-34 150.2 244 41.0
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 3.5e-34 149.4 248 43.5
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 2.9e-33 146.4 249 41.4
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 1.5e-32 144.1 267 40.1
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 1.9e-32 143.7 267 39.0
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 1.9e-32 143.7 249 39.4
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 2.5e-32 143.3 242 40.5
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 8.0e-31 138.3 234 40.2
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 1.4e-30 137.5 236 40.3
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 6.7e-30 135.2 232 40.9
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 8.8e-30 134.8 239 38.5
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 1.5e-29 134.0 249 41.0
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 4.4e-29 132.5 245 40.0
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 9.7e-29 131.3 224 42.4
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 8.2e-28 128.3 239 36.8
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 1.8e-27 127.1 253 40.7
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 1.8e-27 127.1 239 36.4
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 7.7e-26 121.7 244 37.3
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 1.0e-25 121.3 256 38.3
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 1.3e-25 120.9 243 39.1
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.3e-25 120.9 249 34.9
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 3.8e-25 119.4 254 38.2
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 3.8e-25 119.4 123 50.4
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 3.8e-25 119.4 248 38.3
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 5.0e-25 119.0 124 50.8
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 6.5e-25 118.6 128 48.4
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 6.5e-25 118.6 107 57.0
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 8.5e-25 118.2 124 50.8
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.1e-24 117.9 250 36.4
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 1.5e-24 117.5 252 39.3
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 5.5e-24 115.5 245 35.1
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 2.7e-23 113.2 247 38.9
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 3.6e-23 112.8 257 37.4
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 6.1e-23 112.1 124 49.2
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 8.0e-23 111.7 258 38.8
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.4e-22 110.9 255 36.5
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 5.2e-22 109.0 252 35.7
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 1.2e-21 107.8 245 34.3
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 1.5e-21 107.5 210 41.0
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 7.5e-21 105.1 242 34.7
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 2.8e-20 103.2 91 58.2
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 6.3e-20 102.1 244 33.6
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 6.3e-20 102.1 242 33.1
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 8.3e-20 101.7 238 32.8
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 1.1e-19 101.3 244 33.6
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 1.4e-19 100.9 238 37.0
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 3.1e-19 99.8 236 35.2
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 4.1e-19 99.4 236 35.2
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 1.6e-18 97.4 247 34.4
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 1.6e-18 97.4 253 35.2
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 4.5e-18 95.9 246 32.9
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 7.7e-18 95.1 236 33.9
Peaxi162Scf00451g00717 Petunia axillaris HOM05D005081 ORTHO05D005506 2.2e-17 93.6 84 54.8
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 1.1e-16 91.3 248 30.2
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 1.5e-16 90.9 244 34.4
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 2.5e-16 90.1 248 32.7
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 3.2e-16 89.7 237 34.6
Peaxi162Scf00543g00012 Petunia axillaris HOM05D005081 ORTHO05D005506 9.4e-16 88.2 84 53.6
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 1.6e-15 87.4 245 33.9
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 8.0e-15 85.1 238 31.5
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 2.6e-13 80.1 93 51.6
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 3.4e-13 79.7 249 27.7
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 1.3e-12 77.8 240 29.6
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 1.3e-12 77.8 240 29.6
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 1.3e-12 77.8 240 29.6
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 1.3e-12 77.8 149 38.3
QL12p025899 Quercus lobata HOM05D005081 ORTHO05D005506 1.3e-12 77.8 245 33.5
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 4.9e-12 75.9 240 32.1
Peaxi162Scf47975g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 8.3e-12 75.1 101 45.5
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 5.4e-11 72.4 253 26.9
Peaxi162Scf00075g00074 Petunia axillaris HOM05D005081 ORTHO05D005506 2.0e-10 70.5 83 48.2
Atru.chr7.2685 Acer truncatum HOM05D005081 ORTHO05D005506 1.3e-09 67.8 188 33.5
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 5.0e-09 65.9 220 30.5
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 5.0e-09 65.9 246 26.8
Glyma.06G078900 Glycine max HOM05D027503 ORTHO05D005506 1.8e-06 57.4 112 37.5
Psat2g035320 Pisum sativum HOM05D027503 ORTHO05D005506 8.9e-06 55.1 146 32.2


User provided reference genes

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