Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g16130 Coffea canephora HOM05D015856 ORTHO05D019034 4.1e-71 271.2 126 100.0
Cc07_g16340 Coffea canephora HOM05D015856 ORTHO05D019034 8.1e-19 97.4 83 48.2
Cc10_g03740 Coffea canephora HOM05D001279 ORTHO05D001636 6.6e-13 77.8 40 90.0
Cc03_g13270 Coffea canephora HOM05D015856 ORTHO05D019034 2.5e-12 75.9 83 34.9
Cc08_g07870 Coffea canephora HOM05D015856 ORTHO05D019034 3.4e-09 65.5 79 30.4
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 3.4e-09 65.5 79 29.1
CSS0004889 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D001636 5.8e-09 64.7 58 51.7
CSS0007824 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D001636 5.8e-09 64.7 58 51.7
CSS0048313 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D001636 5.8e-09 64.7 40 72.5
Actinidia29855 Actinidia chinensis HOM05D001279 ORTHO05D001636 7.6e-09 64.3 58 51.7
Migut.N01484 Erythranthe guttata HOM05D001279 ORTHO05D001636 7.6e-09 64.3 58 51.7
Migut.N02686 Erythranthe guttata HOM05D001279 ORTHO05D001636 7.6e-09 64.3 58 51.7
COL.COLO4_26433 Corchorus olitorius HOM05D001279 ORTHO05D001636 1.3e-08 63.5 58 53.4
Duzib093G1800 Durio zibethinus HOM05D001279 ORTHO05D009618 1.7e-08 63.2 57 52.6
CiPaw.15G066000 Carya illinoinensis HOM05D001279 ORTHO05D001636 4.9e-08 61.6 40 72.5
Peaxi162Scf01514g00022 Petunia axillaris HOM05D001279 ORTHO05D001636 4.9e-08 61.6 40 67.5
Duzib116G0433 Durio zibethinus HOM05D001279 ORTHO05D009618 6.4e-08 61.2 39 71.8
Gohir.D05G202100 Gossypium hirsutum HOM05D001279 ORTHO05D001636 6.4e-08 61.2 40 72.5
Gorai.009G208000 Gossypium raimondii HOM05D001279 ORTHO05D001636 6.4e-08 61.2 40 72.5
Oeu009576.1 Olea europaea HOM05D001279 ORTHO05D001636 6.4e-08 61.2 40 70.0
Nitab4.5_0008935g0020 Nicotiana tabacum HOM05D001279 ORTHO05D001636 8.4e-08 60.8 40 70.0
GSVIVG01009580001 Vitis vinifera HOM05D001279 ORTHO05D001636 8.4e-08 60.8 58 50.0
Sed0000371 Sechium edule HOM05D001279 ORTHO05D001636 1.1e-07 60.5 55 50.9
AT2G30440 Arabidopsis thaliana HOM05D001279 ORTHO05D001636 1.4e-07 60.1 41 73.2
Cfa018490 Carpinus fangiana HOM05D001279 ORTHO05D001636 1.4e-07 60.1 40 70.0
Cc07_g12450 Coffea canephora HOM05D015856 ORTHO05D019034 1.4e-07 60.1 79 29.1
Haze_17584 Corylus avellana HOM05D001279 ORTHO05D001636 1.4e-07 60.1 40 70.0
Thhalv10016873m.g Eutrema salsugineum HOM05D001279 ORTHO05D001636 1.4e-07 60.1 68 48.5
SalBow8G2826 Salvia bowleyana HOM05D001279 ORTHO05D001636 1.4e-07 60.1 67 46.3
Nitab4.5_0000068g0170 Nicotiana tabacum HOM05D001279 ORTHO05D001636 1.9e-07 59.7 40 70.0
Potri.014G036400 Populus trichocarpa HOM05D001279 ORTHO05D001636 1.9e-07 59.7 37 67.6
Actinidia38044 Actinidia chinensis HOM05D001279 ORTHO05D001636 2.4e-07 59.3 37 67.6
Cc00_g19770 Coffea canephora HOM05D015856 ORTHO05D019034 2.4e-07 59.3 77 28.6
THA.LOC104815189 Tarenaya hassleriana HOM05D001279 ORTHO05D001636 2.4e-07 59.3 41 68.3
CiPaw.16G051000 Carya illinoinensis HOM05D001279 ORTHO05D001636 4.2e-07 58.5 37 67.6
MSTRG.1321 Avicennia marina HOM05D001279 ORTHO05D001636 5.5e-07 58.2 38 68.4
CARHR123880 Cardamine hirsuta HOM05D001279 ORTHO05D001636 5.5e-07 58.2 55 58.2
ClCG05G019510 Citrullus lanatus HOM05D001279 ORTHO05D001636 5.5e-07 58.2 54 48.1
Prupe.1G388900 Prunus persica HOM05D001279 ORTHO05D001636 5.5e-07 58.2 40 65.0
CAN.G371.81 Capsicum annuum HOM05D001279 ORTHO05D001636 7.1e-07 57.8 40 65.0
Gohir.A06G015400 Gossypium hirsutum HOM05D001279 ORTHO05D001636 7.1e-07 57.8 40 67.5
Gohir.D06G013500 Gossypium hirsutum HOM05D001279 ORTHO05D001636 7.1e-07 57.8 40 67.5
Gorai.010G016100 Gossypium raimondii HOM05D001279 ORTHO05D001636 7.1e-07 57.8 40 67.5
Hma1.2p1_0260F.1_g104570 Hydrangea macrophylla HOM05D001279 ORTHO05D001636 7.1e-07 57.8 58 48.3
Hma1.2p1_0337F.1_g129160 Hydrangea macrophylla HOM05D001279 ORTHO05D001636 7.1e-07 57.8 40 65.0
PSO170G3432 Papaver somniferum HOM05D001279 ORTHO05D001636 7.1e-07 57.8 58 39.7
SalBow7G2816 Salvia bowleyana HOM05D001279 ORTHO05D001636 7.1e-07 57.8 58 50.0
Solyc04g079550.4 Solanum lycopersicum HOM05D001279 ORTHO05D001636 7.1e-07 57.8 40 65.0
Sopen04g033130 Solanum pennellii HOM05D001279 ORTHO05D001636 7.1e-07 57.8 40 65.0
PGSC0003DMG401011681 Solanum tuberosum HOM05D001279 ORTHO05D001636 7.1e-07 57.8 40 65.0
BcaC02g08020 Brassica carinata HOM05D001279 ORTHO05D001636 9.3e-07 57.4 41 68.3
A04p23190 Brassica napus HOM05D001279 ORTHO05D001636 9.3e-07 57.4 41 68.3
C04p59340 Brassica napus HOM05D001279 ORTHO05D001636 9.3e-07 57.4 41 68.3
BolC4t27442H Brassica oleracea HOM05D001279 ORTHO05D001636 9.3e-07 57.4 41 68.3
BraA04t17846Z Brassica rapa HOM05D001279 ORTHO05D001636 9.3e-07 57.4 41 68.3
PGR083G1077 Punica granatum HOM05D001279 ORTHO05D001636 9.3e-07 57.4 40 60.0
Hund20787 Selenicereus undatus HOM05D001279 ORTHO05D001636 9.3e-07 57.4 40 70.0
MSTRG.24316 Avicennia marina HOM05D001279 ORTHO05D001636 1.2e-06 57.0 59 49.2
MD15G1034800 Malus domestica HOM05D001279 ORTHO05D001636 1.2e-06 57.0 40 65.0
Manes.05G169200 Manihot esculenta HOM05D001279 ORTHO05D001636 1.2e-06 57.0 40 62.5
Ah.11g043430 Amaranthus hybridus HOM05D001279 ORTHO05D001636 1.6e-06 56.6 41 61.0
AL4G25320 Arabidopsis lyrata HOM05D001279 ORTHO05D001636 1.6e-06 56.6 41 68.3
Sp4g12990 Schrenkiella parvula HOM05D001279 ORTHO05D001636 1.6e-06 56.6 41 68.3
THA.LOC104798781 Tarenaya hassleriana HOM05D001279 ORTHO05D001636 2.1e-06 56.2 31 77.4
Thhalv10008025m.g Eutrema salsugineum HOM05D001279 ORTHO05D001636 2.7e-06 55.8 41 65.9
Zm00001eb314690 Zea mays HOM05D001279 ORTHO05D001636 2.7e-06 55.8 58 41.4
C05p05010 Brassica napus HOM05D001279 ORTHO05D001636 3.5e-06 55.5 53 47.2
Carub.0004s1161 Capsella rubella HOM05D001279 ORTHO05D001636 3.5e-06 55.5 41 65.9
Cpa.g.sc357.9 Carica papaya HOM05D001279 ORTHO05D001636 3.5e-06 55.5 40 65.0
Dinv36008 Davidia involucrata HOM05D001279 ORTHO05D001636 3.5e-06 55.5 40 65.0
HanXRQChr02g0046581 Helianthus annuus HOM05D001279 ORTHO05D001636 3.5e-06 55.5 58 46.6
MD08G1040300 Malus domestica HOM05D001279 ORTHO05D001636 3.5e-06 55.5 58 46.6
Oeu028456.1 Olea europaea HOM05D001279 ORTHO05D001636 3.5e-06 55.5 40 62.5
Sabra14G0026200 Salix brachista HOM05D001279 ORTHO05D001636 3.5e-06 55.5 37 64.9
Sed0018760 Sechium edule HOM05D001279 ORTHO05D001636 3.5e-06 55.5 28 82.1
BcaB06g28366 Brassica carinata HOM05D001279 ORTHO05D001636 4.6e-06 55.1 41 65.9
Ciclev10001591m.g Citrus clementina HOM05D001279 ORTHO05D001636 4.6e-06 55.1 48 54.2
PSO210G1351 Papaver somniferum HOM05D001279 ORTHO05D001636 4.6e-06 55.1 67 35.8
Rhsim06G0041100 Rhododendron simsii HOM05D001279 ORTHO05D001636 4.6e-06 55.1 64 42.2
FvH4_2g40680 Fragaria vesca HOM05D001279 ORTHO05D001636 6.0e-06 54.7 40 65.0
FAN15G3587 Fragaria x ananassa HOM05D001279 ORTHO05D001636 6.0e-06 54.7 40 65.0
Oeu006159.1 Olea europaea HOM05D001279 ORTHO05D001636 6.0e-06 54.7 31 74.2
RcHm_v2.0_Chr6g0299931 Rosa chinensis HOM05D001279 ORTHO05D001636 6.0e-06 54.7 40 65.0
unitig_8.g5011 Utricularia gibba HOM05D001279 ORTHO05D001636 6.0e-06 54.7 55 43.6
EL10Ac1g01830 Beta vulgaris HOM05D001279 ORTHO05D001636 7.9e-06 54.3 40 60.0
BolC8t52624H Brassica oleracea HOM05D001279 ORTHO05D001636 7.9e-06 54.3 26 88.5
Eucgr.F00038 Eucalyptus grandis HOM05D001279 ORTHO05D001636 7.9e-06 54.3 28 82.1
Eucgr.F02385 Eucalyptus grandis HOM05D001279 ORTHO05D001636 7.9e-06 54.3 40 60.0


User provided reference genes

Program Settings