Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 0.0e+00 2746.8 1362 100.0
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 0.0e+00 1135.9 1386 45.4
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 7.8e-301 1037.7 1396 42.2
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 2.9e-295 1019.2 1251 46.5
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 9.6e-291 1004.2 1402 41.7
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 5.8e-288 995.0 1383 42.4
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 1.6e-285 986.9 1408 43.1
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 2.7e-285 986.1 1405 41.6
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 4.6e-285 985.3 1389 41.9
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 6.0e-285 984.9 1396 41.3
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 5.6e-283 978.4 1400 41.5
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 9.3e-278 961.1 1399 41.6
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 1.9e-275 953.4 1383 41.3
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 1.5e-272 943.7 1417 40.2
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 2.6e-272 943.0 1404 39.6
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 3.5e-269 932.6 1430 40.0
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 3.0e-268 929.5 1421 39.8
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 1.9e-267 926.8 1413 40.3
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 7.4e-267 924.9 1402 39.7
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 2.4e-265 919.8 1346 42.2
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 2.4e-265 919.8 1423 40.2
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 2.7e-261 906.4 1392 39.4
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 2.2e-258 896.7 1399 38.5
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 1.7e-255 887.1 1415 38.8
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.0e-252 877.9 1417 38.7
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 3.1e-249 866.3 1380 39.0
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 4.1e-249 865.9 1383 38.1
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 1.5e-248 864.0 1448 38.6
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 5.9e-248 862.1 1471 38.1
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 1.7e-247 860.5 1148 43.2
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 1.4e-246 857.4 1377 37.3
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 2.7e-245 853.2 1371 38.7
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 7.9e-245 851.7 1401 37.6
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 3.9e-244 849.4 1394 38.3
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 6.7e-244 848.6 1394 38.1
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.6e-240 836.6 1441 37.6
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 3.5e-240 836.3 1431 37.5
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 6.5e-239 832.0 1403 36.9
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 2.5e-230 803.5 1190 41.0
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 2.1e-229 800.4 1398 38.0
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 8.0e-229 798.5 1415 36.4
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 8.0e-229 798.5 1412 37.0
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 8.8e-220 768.5 1400 35.0
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 1.2e-219 768.1 1399 36.3
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 1.5e-219 767.7 1402 34.8
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 1.5e-219 767.7 1398 36.5
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 4.4e-219 766.1 1387 37.0
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.4e-217 761.1 1291 37.6
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 2.4e-217 760.4 1387 36.4
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 6.6e-215 752.3 1384 34.8
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 4.7e-213 746.1 1365 36.2
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 1.4e-212 744.6 1079 41.4
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 1.7e-210 737.6 1400 35.1
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 2.2e-210 737.3 1387 36.0
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 1.6e-208 731.1 1387 36.1
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 8.6e-207 725.3 1385 36.0
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 1.0e-199 701.8 1408 34.6
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 2.8e-197 693.7 1383 34.0
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 5.2e-196 689.5 1371 34.4
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 2.6e-195 687.2 1380 34.7
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 2.6e-195 687.2 1400 33.6
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 4.6e-192 676.4 1435 33.2
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 4.6e-192 676.4 1400 33.7
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 2.5e-190 670.6 1394 33.8
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 2.6e-187 660.6 1232 35.7
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 5.8e-187 659.4 1376 34.1
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 3.7e-186 656.8 1405 34.7
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 2.1e-184 651.0 1391 34.3
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 4.6e-184 649.8 1402 33.9
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 1.7e-183 647.9 1399 33.9
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 2.5e-182 644.0 1406 33.8
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 2.1e-181 641.0 1384 33.4
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 3.6e-181 640.2 1404 33.7
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 8.1e-181 639.0 1392 32.8
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 3.9e-175 620.2 1386 33.8
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 7.3e-174 615.9 1508 30.8
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 4.3e-166 590.1 1219 35.4
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 6.2e-165 586.3 1390 32.9
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 3.2e-161 573.9 1387 30.9
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 1.1e-158 565.5 1485 31.0
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 3.1e-156 557.4 832 40.5
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 5.3e-140 503.4 1024 34.6
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 1.7e-130 471.9 986 34.1
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 2.2e-130 471.5 415 56.4
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 2.8e-125 454.5 932 32.3
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 1.5e-121 442.2 1394 28.3
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 6.7e-119 433.3 839 36.0
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 3.7e-93 347.8 469 42.9
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 6.6e-90 337.0 350 50.9
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 1.4e-87 329.3 408 47.5
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 5.8e-86 323.9 441 42.0
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 9.2e-84 316.6 642 34.6
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.9e-76 292.4 721 32.5
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 1.9e-73 282.3 367 46.0
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.4e-70 271.6 353 44.5
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.9e-68 265.8 266 51.1
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 1.7e-66 259.2 450 36.9
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 1.8e-63 249.2 467 36.8
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 2.7e-59 235.3 398 38.9
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 1.3e-58 233.0 1326 21.9
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.9e-57 229.2 251 48.2
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 3.6e-56 224.9 371 37.5
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 2.0e-54 219.2 1216 22.4
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.4e-44 186.4 202 49.0
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 3.2e-44 185.3 273 39.2
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 2.8e-40 172.2 210 46.7
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 3.1e-39 168.7 622 27.8
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 3.1e-39 168.7 408 29.4
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 3.1e-39 168.7 327 34.9
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 1.5e-38 166.4 122 62.3
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 3.4e-38 165.2 202 46.0
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 1.3e-37 163.3 355 29.6
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 1.9e-36 159.5 280 34.6
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 2.5e-36 159.1 410 30.7
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 4.1e-31 141.7 547 27.6
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 3.7e-24 118.6 187 35.3
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.1e-23 117.1 217 31.3
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 1.6e-19 103.2 274 31.0
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 3.6e-19 102.1 272 30.1
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 4.6e-19 101.7 215 32.6
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 2.0e-14 86.3 57 73.7
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 1.0e-13 84.0 267 29.6
AagrBONN_evm.TU.Sc2ySwM_368.213 Anthoceros agrestis HOM05D014773 ORTHO05D007236 4.7e-11 75.1 372 23.1
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 1.4e-10 73.6 51 70.6
Solyc07g021115.1 Solanum lycopersicum HOM05D006182 ORTHO05D007236 3.9e-10 72.0 79 44.3
unitig_19.g30006 Utricularia gibba HOM05D006182 ORTHO05D007236 2.0e-09 69.7 154 33.1
SEGI_08955 Sequoiadendron giganteum HOM05D009451 ORTHO05D010233 9.7e-09 67.4 544 21.1
MBI16_g32432_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 1.4e-07 63.5 70 41.4


User provided reference genes

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