Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 9.1e-78 293.5 148 100.0
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 2.2e-39 166.0 130 73.1
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 6.0e-29 131.3 74 91.9
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 6.2e-26 121.3 81 81.5
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 9.5e-19 97.4 67 71.6
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 1.6e-18 96.7 136 50.7
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 8.1e-18 94.4 89 61.8
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 1.4e-17 93.6 134 48.5
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 1.8e-17 93.2 135 48.1
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 2.3e-17 92.8 65 76.9
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 3.1e-17 92.4 63 74.6
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 4.0e-17 92.0 78 65.4
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 5.2e-17 91.7 64 71.9
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 8.9e-17 90.9 54 85.2
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 1.2e-16 90.5 134 48.5
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 1.5e-16 90.1 94 55.3
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 2.0e-16 89.7 53 84.9
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 2.6e-16 89.4 130 46.2
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 3.4e-16 89.0 75 64.0
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 5.8e-16 88.2 102 51.0
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 7.5e-16 87.8 104 51.9
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 7.5e-16 87.8 53 83.0
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 9.9e-16 87.4 103 52.4
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 9.9e-16 87.4 103 52.4
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 9.9e-16 87.4 103 46.6
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 9.9e-16 87.4 66 71.2
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 9.9e-16 87.4 61 73.8
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.3e-15 87.0 52 84.6
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.3e-15 87.0 52 84.6
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 1.3e-15 87.0 90 53.3
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 1.3e-15 87.0 52 82.7
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 2.2e-15 86.3 87 56.3
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 2.2e-15 86.3 132 42.4
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 2.2e-15 86.3 114 47.4
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 3.7e-15 85.5 112 47.3
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 3.7e-15 85.5 146 42.5
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 3.7e-15 85.5 114 47.4
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 3.7e-15 85.5 60 70.0
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 4.9e-15 85.1 62 72.6
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 4.9e-15 85.1 62 72.6
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 4.9e-15 85.1 53 79.2
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 4.9e-15 85.1 53 79.2
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 4.9e-15 85.1 53 79.2
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 6.4e-15 84.7 52 82.7
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 6.4e-15 84.7 110 47.3
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 6.4e-15 84.7 99 53.5
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 6.4e-15 84.7 130 42.3
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 1.1e-14 84.0 90 51.1
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 1.1e-14 84.0 93 51.6
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 1.1e-14 84.0 130 43.1
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 1.4e-14 83.6 111 47.7
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 1.4e-14 83.6 130 44.6
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 1.4e-14 83.6 128 45.3
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.4e-14 83.6 128 45.3
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 1.4e-14 83.6 61 68.9
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 1.4e-14 83.6 103 46.6
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.9e-14 83.2 130 43.1
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 2.4e-14 82.8 62 66.1
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 2.4e-14 82.8 131 43.5
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.4e-14 82.8 103 50.5
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 3.2e-14 82.4 56 71.4
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 3.2e-14 82.4 106 50.9
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 4.1e-14 82.0 93 52.7
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.1e-14 82.0 106 46.2
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 4.1e-14 82.0 107 50.5
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 4.1e-14 82.0 60 63.3
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 5.4e-14 81.6 55 74.5
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 7.1e-14 81.3 52 75.0
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 7.1e-14 81.3 131 41.2
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 9.2e-14 80.9 53 75.5
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 9.2e-14 80.9 53 75.5
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 9.2e-14 80.9 53 75.5
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 9.2e-14 80.9 103 44.7
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 1.2e-13 80.5 53 77.4
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 1.2e-13 80.5 60 63.3
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 1.6e-13 80.1 53 75.5
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 1.6e-13 80.1 53 75.5
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 1.6e-13 80.1 53 75.5
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 1.6e-13 80.1 53 75.5
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 1.6e-13 80.1 53 75.5
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 1.6e-13 80.1 53 75.5
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 2.1e-13 79.7 53 73.6
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 2.1e-13 79.7 101 48.5
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 2.1e-13 79.7 53 75.5
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 2.7e-13 79.3 71 56.3
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 2.7e-13 79.3 104 44.2
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 3.5e-13 79.0 53 73.6
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 3.5e-13 79.0 53 73.6
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 3.5e-13 79.0 53 73.6
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 3.5e-13 79.0 53 73.6
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 3.5e-13 79.0 53 73.6
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.6e-13 78.6 52 80.8
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 4.6e-13 78.6 130 42.3
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 4.6e-13 78.6 116 43.1
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 4.6e-13 78.6 120 42.5
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 4.6e-13 78.6 52 73.1
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 6.0e-13 78.2 52 75.0
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 6.0e-13 78.2 52 75.0
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 6.0e-13 78.2 52 75.0
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 6.0e-13 78.2 52 75.0
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 6.0e-13 78.2 52 75.0
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 6.0e-13 78.2 52 75.0
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 6.0e-13 78.2 103 48.5
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 6.0e-13 78.2 64 57.8
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 6.0e-13 78.2 110 49.1
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 7.8e-13 77.8 94 48.9
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 7.8e-13 77.8 108 48.1
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 1.0e-12 77.4 93 48.4
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.0e-12 77.4 70 52.9
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 1.0e-12 77.4 104 42.3
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.0e-12 77.4 110 47.3
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.3e-12 77.0 62 59.7
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 1.3e-12 77.0 57 66.7
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.7e-12 76.6 99 49.5
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.7e-12 76.6 62 58.1
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 2.3e-12 76.3 101 44.6
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 3.9e-12 75.5 52 71.2
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 8.6e-12 74.3 51 78.4
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 8.6e-12 74.3 53 69.8
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 1.5e-11 73.6 164 39.0
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 5.6e-11 71.6 90 51.1
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 5.6e-11 71.6 96 45.8
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 7.3e-11 71.2 60 56.7
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 1.6e-10 70.1 61 54.1
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 2.1e-10 69.7 101 48.5
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 2.8e-10 69.3 98 50.0
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 2.8e-10 69.3 52 57.7
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 2.8e-10 69.3 130 36.9
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 4.7e-10 68.6 50 66.0
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 4.7e-10 68.6 58 51.7
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 8.1e-10 67.8 101 46.5
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 8.1e-10 67.8 101 46.5
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 8.1e-10 67.8 92 44.6
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.1e-09 67.4 89 47.2
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.8e-09 66.6 52 65.4
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 2.4e-09 66.2 53 62.3
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 1.2e-08 63.9 34 94.1
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 2.0e-08 63.2 34 85.3
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 4.4e-08 62.0 33 87.9
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 7.6e-08 61.2 42 76.2
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 9.9e-08 60.8 57 57.9
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 9.9e-08 60.8 57 57.9
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 2.9e-07 59.3 33 84.8
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 2.9e-07 59.3 33 81.8
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 4.9e-07 58.5 46 63.0
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 6.4e-07 58.2 33 81.8
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 6.4e-07 58.2 57 56.1
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 6.4e-07 58.2 33 84.8
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 6.4e-07 58.2 36 80.6
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 1.1e-06 57.4 33 75.8
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 7.1e-06 54.7 53 52.8


User provided reference genes

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