Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g15560 Coffea canephora HOM05D004861 ORTHO05D001964 4.5e-61 237.7 114 100.0
Cc07_g11120 Coffea canephora HOM05D004861 ORTHO05D001964 1.6e-58 229.2 110 100.0
CiPaw.07G061400 Carya illinoinensis HOM05D004861 ORTHO05D001964 1.7e-52 209.1 110 87.3
Dinv40122 Davidia involucrata HOM05D004861 ORTHO05D001964 3.0e-52 208.4 110 88.2
QL06p051243 Quercus lobata HOM05D004861 ORTHO05D001964 6.6e-52 207.2 109 86.2
Nitab4.5_0007831g0010 Nicotiana tabacum HOM05D004861 ORTHO05D001964 7.3e-51 203.8 110 85.5
Haze_03721 Corylus avellana HOM05D004861 ORTHO05D001964 9.5e-51 203.4 110 83.6
Cfa007008 Carpinus fangiana HOM05D004861 ORTHO05D001964 1.2e-50 203.0 110 83.6
Hma1.2p1_0315F.1_g122370 Hydrangea macrophylla HOM05D004861 ORTHO05D001964 3.6e-50 201.4 110 85.5
Nitab4.5_0001685g0060 Nicotiana tabacum HOM05D004861 ORTHO05D001964 3.6e-50 201.4 110 84.5
CSS0021454 Camellia sinensis var. sinensis HOM05D004861 ORTHO05D001964 4.7e-50 201.1 110 85.5
Peaxi162Scf00635g00084 Petunia axillaris HOM05D004861 ORTHO05D001964 8.0e-50 200.3 110 84.5
RcHm_v2.0_Chr2g0098831 Rosa chinensis HOM05D004861 ORTHO05D001964 1.0e-49 199.9 108 86.1
GSVIVG01006513001 Vitis vinifera HOM05D004861 ORTHO05D001964 1.4e-49 199.5 108 85.2
CAN.G354.49 Capsicum annuum HOM05D004861 ORTHO05D001964 2.3e-49 198.7 110 82.7
Actinidia28721 Actinidia chinensis HOM05D004861 ORTHO05D001964 3.1e-49 198.4 110 84.5
ClCG10G000560 Citrullus lanatus HOM05D004861 ORTHO05D001964 4.0e-49 198.0 110 82.7
Eucgr.J02473 Eucalyptus grandis HOM05D004861 ORTHO05D001964 8.9e-49 196.8 110 83.6
Gohir.D03G007200 Gossypium hirsutum HOM05D004861 ORTHO05D001964 1.5e-48 196.1 110 82.7
MSTRG.2733 Avicennia marina HOM05D004861 ORTHO05D001964 2.6e-48 195.3 110 81.8
Glyma.16G123900 Glycine max HOM05D004861 ORTHO05D001964 2.6e-48 195.3 110 81.8
FAN28G0434 Fragaria x ananassa HOM05D004861 ORTHO05D001964 4.4e-48 194.5 108 84.3
MELO3C013752.2 Cucumis melo HOM05D004861 ORTHO05D001964 5.8e-48 194.1 110 80.9
CsaV3_3G000640 Cucumis sativus L. HOM05D004861 ORTHO05D001964 5.8e-48 194.1 110 80.9
Phvul.003G265700 Phaseolus vulgaris HOM05D004861 ORTHO05D001964 5.8e-48 194.1 110 81.8
VMungo0251G3709 Vigna mungo HOM05D004861 ORTHO05D001964 7.5e-48 193.7 110 81.8
Manes.01G149100 Manihot esculenta HOM05D004861 ORTHO05D001964 9.8e-48 193.4 110 81.8
Prupe.7G172500 Prunus persica HOM05D004861 ORTHO05D001964 9.8e-48 193.4 108 82.4
CANSAT01G1088 Cannabis sativa HOM05D004861 ORTHO05D001964 1.3e-47 193.0 110 79.1
FvH4_1g11320 Fragaria vesca HOM05D004861 ORTHO05D001964 1.3e-47 193.0 108 83.3
Gohir.A02G172700 Gossypium hirsutum HOM05D004861 ORTHO05D001964 1.3e-47 193.0 110 81.8
Gorai.003G007500 Gossypium raimondii HOM05D004861 ORTHO05D001964 1.3e-47 193.0 110 81.8
FAN19G1263 Fragaria x ananassa HOM05D004861 ORTHO05D001964 2.9e-47 191.8 108 82.4
FAN26G1727 Fragaria x ananassa HOM05D004861 ORTHO05D001964 2.9e-47 191.8 108 83.3
Lj4A223T35 Lonicera japonica HOM05D004861 ORTHO05D001964 2.9e-47 191.8 110 84.5
Lj4g0003896 Lotus japonicus HOM05D004861 ORTHO05D001964 3.7e-47 191.4 110 79.1
Thecc.01G013900 Theobroma cacao HOM05D004861 ORTHO05D001964 3.7e-47 191.4 110 80.0
Rhsim08G0031700 Rhododendron simsii HOM05D004861 ORTHO05D001964 4.9e-47 191.0 112 80.4
Ciclev10026280m.g Citrus clementina HOM05D004861 ORTHO05D001964 6.4e-47 190.7 110 78.2
Dinv33667 Davidia involucrata HOM05D004861 ORTHO05D001964 6.4e-47 190.7 110 81.8
SGA_v2.0_scaffold2G00975 Striga asiatica HOM05D004861 ORTHO05D001964 6.4e-47 190.7 110 80.9
MBI05_g33209_MAGBIO Magnolia biondii HOM05D004861 ORTHO05D001964 1.1e-46 189.9 110 80.9
Duzib147G1106 Durio zibethinus HOM05D004861 ORTHO05D001964 2.4e-46 188.7 110 80.0
vmacro18429 Vaccinium macrocarpon HOM05D004861 ORTHO05D001964 2.4e-46 188.7 112 79.5
Cpa.g.sc6.293 Carica papaya HOM05D004861 ORTHO05D001964 3.2e-46 188.3 110 79.1
Duzib264G0687 Durio zibethinus HOM05D004861 ORTHO05D001964 3.2e-46 188.3 110 80.9
unitig_736.g22723 Utricularia gibba HOM05D004861 ORTHO05D001964 4.1e-46 188.0 110 80.9
Sed0012496 Sechium edule HOM05D004861 ORTHO05D001964 5.4e-46 187.6 110 79.1
Sc03g0003720 Simmondsia chinensis HOM05D004861 ORTHO05D001964 5.4e-46 187.6 108 81.5
Nitab4.5_0004653g0010 Nicotiana tabacum HOM05D004861 ORTHO05D001964 1.6e-45 186.0 108 78.7
Potri.005G110200 Populus trichocarpa HOM05D004861 ORTHO05D001964 1.6e-45 186.0 110 78.2
Atru.chr3.873 Acer truncatum HOM05D004861 ORTHO05D001964 3.5e-45 184.9 110 80.0
Actinidia27235 Actinidia chinensis HOM05D004861 ORTHO05D001964 3.5e-45 184.9 103 83.5
Hma1.2p1_0869F.1_g230670 Hydrangea macrophylla HOM05D004861 ORTHO05D001964 3.5e-45 184.9 110 77.3
Nitab4.5_0001789g0090 Nicotiana tabacum HOM05D004861 ORTHO05D001964 3.5e-45 184.9 108 78.7
Sabra05G0090400 Salix brachista HOM05D004861 ORTHO05D001964 3.5e-45 184.9 110 77.3
Migut.H02183 Erythranthe guttata HOM05D004861 ORTHO05D001964 6.0e-45 184.1 110 79.1
CAN.G2331.2 Capsicum annuum HOM05D004861 ORTHO05D001964 7.8e-45 183.7 110 77.3
Ca_03631_v3 Cicer arietinum L. HOM05D004861 ORTHO05D001964 1.0e-44 183.3 108 76.9
Gorai.007G192100 Gossypium raimondii HOM05D004861 ORTHO05D001964 1.7e-44 182.6 110 78.2
EL10Ac6g15516 Beta vulgaris HOM05D004861 ORTHO05D001964 2.3e-44 182.2 110 76.4
TWI09G1074 Tripterygium wilfordii HOM05D004861 ORTHO05D001964 2.3e-44 182.2 110 78.2
Glyma.02G045900 Glycine max HOM05D004861 ORTHO05D001964 3.0e-44 181.8 110 77.3
COL.COLO4_22468 Corchorus olitorius HOM05D004861 ORTHO05D001964 3.9e-44 181.4 117 75.2
Atru.chr3.870 Acer truncatum HOM05D004861 ORTHO05D001964 6.6e-44 180.6 108 78.7
Gohir.A11G173200 Gossypium hirsutum HOM05D004861 ORTHO05D001964 6.6e-44 180.6 110 78.2
SalBow3G1445 Salvia bowleyana HOM05D004861 ORTHO05D001964 6.6e-44 180.6 110 79.1
SalBow3G4058 Salvia bowleyana HOM05D004861 ORTHO05D001964 6.6e-44 180.6 110 79.1
PGSC0003DMG400003650 Solanum tuberosum HOM05D004861 ORTHO05D001964 1.9e-43 179.1 110 77.3
AUR62003332 Chenopodium quinoa HOM05D004861 ORTHO05D001964 2.5e-43 178.7 110 74.5
PGR102G1053 Punica granatum HOM05D004861 ORTHO05D001964 2.5e-43 178.7 111 78.4
Solyc03g033390.3 Solanum lycopersicum HOM05D004861 ORTHO05D001964 2.5e-43 178.7 110 76.4
PGSC0003DMG400022527 Solanum tuberosum HOM05D004861 ORTHO05D001964 3.3e-43 178.3 110 75.5
MD15G1241500 Malus domestica HOM05D004861 ORTHO05D001964 5.6e-43 177.6 108 75.9
Hund14064 Selenicereus undatus HOM05D004861 ORTHO05D001964 5.6e-43 177.6 108 75.9
Lalb_Chr09g0334231 Lupinus albus HOM05D004861 ORTHO05D001964 1.2e-42 176.4 108 75.9
Sopen03g006160 Solanum pennellii HOM05D004861 ORTHO05D001964 1.2e-42 176.4 110 75.5
arahy.Tifrunner.gnm1.ann1.67ZU0R Arachis hypogaea HOM05D004861 ORTHO05D001964 3.6e-42 174.9 112 74.1
arahy.Tifrunner.gnm1.ann1.HCQ68S Arachis hypogaea HOM05D004861 ORTHO05D001964 3.6e-42 174.9 112 74.1
AUR62029512 Chenopodium quinoa HOM05D004861 ORTHO05D001964 3.6e-42 174.9 110 74.5
MD02G1127300 Malus domestica HOM05D004861 ORTHO05D001964 3.6e-42 174.9 108 74.1
TPR.G19498 Trifolium pratense HOM05D004861 ORTHO05D001964 6.2e-42 174.1 108 74.1
Lsat_1_v5_gn_2_75700 Lactuca sativa HOM05D004861 ORTHO05D001964 8.1e-42 173.7 113 78.8
PSO170G2109 Papaver somniferum HOM05D004861 ORTHO05D001964 8.1e-42 173.7 110 75.5
THA.LOC104819741 Tarenaya hassleriana HOM05D004861 ORTHO05D001964 1.8e-41 172.6 110 71.8
Hma1.2p1_2620F.1_g325560 Hydrangea macrophylla HOM05D004861 ORTHO05D001964 4.0e-41 171.4 100 77.0
Sed0009244 Sechium edule HOM05D004861 ORTHO05D001964 4.0e-41 171.4 108 73.1
TAR376G0516 Trochodendron aralioides HOM05D004861 ORTHO05D001964 6.8e-41 170.6 110 74.5
Medtr8g075190 Medicago truncatula HOM05D004861 ORTHO05D001964 1.5e-40 169.5 108 74.1
TWI53G0158 Tripterygium wilfordii HOM05D004861 ORTHO05D001964 2.0e-40 169.1 110 73.6
Peaxi162Scf00328g00051 Petunia axillaris HOM05D004861 ORTHO05D001964 7.5e-40 167.2 107 72.0
ECA232G4489 Erigeron canadensis HOM05D004861 ORTHO05D001964 6.4e-39 164.1 111 75.7
Sc16g0001960 Simmondsia chinensis HOM05D004861 ORTHO05D001964 1.1e-38 163.3 110 70.9
Nn5g30794 Nelumbo nucifera HOM05D004861 ORTHO05D001964 9.2e-38 160.2 110 73.6
TAR628G0932 Trochodendron aralioides HOM05D004861 ORTHO05D001964 9.2e-38 160.2 108 73.1
HanXRQChr14g0441771 Helianthus annuus HOM05D004861 ORTHO05D001964 1.2e-37 159.8 112 72.3
Oeu041083.1 Olea europaea HOM05D004861 ORTHO05D001964 1.2e-37 159.8 102 74.5
DCAR_014039 Daucus carota HOM05D004861 ORTHO05D001964 3.5e-37 158.3 110 71.8
Prupe.6G141800 Prunus persica HOM05D004861 ORTHO05D001964 1.7e-36 156.0 88 83.0
Aqoxy5G01828 Aquilegia oxysepala HOM05D004861 ORTHO05D001964 1.5e-35 152.9 111 69.4
HanXRQChr13g0414571 Helianthus annuus HOM05D004861 ORTHO05D001964 1.5e-35 152.9 110 70.9
HanXRQChr15g0487221 Helianthus annuus HOM05D004861 ORTHO05D001964 3.3e-35 151.8 111 69.4
ECA238G3415 Erigeron canadensis HOM05D004861 ORTHO05D001964 7.3e-35 150.6 111 70.3
Ah.03g149180 Amaranthus hybridus HOM05D004861 ORTHO05D001964 1.6e-34 149.4 111 68.5
Thhalv10025800m.g Eutrema salsugineum HOM05D004861 ORTHO05D001964 1.8e-33 146.0 114 64.9
Sp7g33710 Schrenkiella parvula HOM05D004861 ORTHO05D001964 2.3e-33 145.6 114 65.8
Aa31LG6G12880 Aethionema arabicum HOM05D004861 ORTHO05D001964 4.0e-33 144.8 113 63.7
CARHR244330 Cardamine hirsuta HOM05D004861 ORTHO05D001964 8.9e-33 143.7 114 64.0
HPP92_020724 Vanilla planifolia HOM05D004861 ORTHO05D001964 8.9e-33 143.7 110 65.5
BcaNung05052 Brassica carinata HOM05D004861 ORTHO05D001964 3.4e-32 141.7 114 64.0
BolC7t46569H Brassica oleracea HOM05D004861 ORTHO05D001964 3.4e-32 141.7 114 64.0
AL7G15110 Arabidopsis lyrata HOM05D004861 ORTHO05D001964 1.7e-31 139.4 112 61.6
DCAR_010139 Daucus carota HOM05D004861 ORTHO05D001964 1.7e-31 139.4 110 64.5
AT4G35930 Arabidopsis thaliana HOM05D004861 ORTHO05D001964 6.4e-31 137.5 112 62.5
C07p61440 Brassica napus HOM05D004861 ORTHO05D001964 6.4e-31 137.5 114 63.2
BraA03t15465Z Brassica rapa HOM05D004861 ORTHO05D001964 6.4e-31 137.5 114 63.2
A03p63980 Brassica napus HOM05D004861 ORTHO05D001964 2.4e-30 135.6 114 62.3
Carub.0007s0429 Capsella rubella HOM05D004861 ORTHO05D001964 2.4e-30 135.6 112 60.7
Psat4g101760 Pisum sativum HOM05D004861 ORTHO05D001964 7.3e-27 124.0 108 60.2
Os10g0438500 Oryza sativa ssp. japonica HOM05D004861 ORTHO05D001964 1.4e-25 119.8 111 55.0
ECA234G4600 Erigeron canadensis HOM05D004861 ORTHO05D001964 6.9e-25 117.5 74 75.7
CDE05G1953 Ceratophyllum demersum HOM05D004861 ORTHO05D001964 2.0e-24 115.9 110 56.4
Zm00001eb222730 Zea mays HOM05D004861 ORTHO05D001964 3.2e-22 108.6 113 53.1
HanXRQChr04g0112761 Helianthus annuus HOM05D004861 ORTHO05D001964 1.2e-21 106.7 86 62.8
SEGI_23955 Sequoiadendron giganteum HOM05D004861 ORTHO05D001964 1.6e-21 106.3 110 54.5
CDE02G1334 Ceratophyllum demersum HOM05D004861 ORTHO05D001964 1.3e-20 103.2 107 53.3
Zm00001eb047460 Zea mays HOM05D004861 ORTHO05D001964 8.1e-18 94.0 114 49.1
AagrBONN_evm.TU.Sc2ySwM_368.3169 Anthoceros agrestis HOM05D004861 ORTHO05D001964 1.1e-14 83.6 110 46.4
MBI08_g29203_MAGBIO Magnolia biondii HOM05D000900 ORTHO05D001964 7.1e-14 80.9 78 53.8
SMO339G0067 Selaginella moellendorffii HOM05D004861 ORTHO05D001964 2.3e-12 75.9 109 42.2
AL1G51100 Arabidopsis lyrata HOM05D004861 ORTHO05D001964 3.3e-11 72.0 66 53.0
Pp3c9_8080 Physcomitrium patens HOM05D004861 ORTHO05D001964 9.6e-11 70.5 112 41.1
VMungo1215G1794 Vigna mungo HOM05D004861 ORTHO05D001964 1.2e-08 63.5 46 67.4
Pp3c24_3500 Physcomitrium patens HOM05D004861 ORTHO05D001964 4.5e-08 61.6 107 40.2
SMO367G0386 Selaginella moellendorffii HOM05D004861 ORTHO05D001964 1.7e-07 59.7 90 42.2


User provided reference genes

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