Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 2.0e-247 858.6 411 100.0
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 3.1e-152 542.3 378 67.7
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 6.9e-152 541.2 383 67.1
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 2.0e-151 539.7 385 67.0
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 3.4e-151 538.9 379 68.1
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 3.8e-150 535.4 379 67.3
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 5.0e-150 535.0 383 66.3
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 1.4e-149 533.5 388 67.8
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.2e-148 530.4 383 65.8
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 1.4e-147 526.9 370 68.1
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 1.4e-147 526.9 380 65.5
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 1.8e-147 526.6 380 66.6
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 1.8e-147 526.6 392 65.3
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 8.8e-147 524.2 379 67.3
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 1.5e-146 523.5 380 64.7
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 2.5e-146 522.7 382 66.5
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 4.3e-146 521.9 380 65.8
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 5.5e-141 505.0 380 65.0
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 1.6e-140 503.4 381 64.6
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 6.7e-139 498.0 386 62.2
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 6.7e-139 498.0 378 62.7
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 9.7e-138 494.2 376 62.5
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 2.2e-137 493.0 381 63.3
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 6.3e-137 491.5 375 62.7
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 1.8e-136 490.0 381 63.3
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 7.0e-136 488.0 377 62.6
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 1.2e-135 487.3 393 58.8
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 1.0e-134 484.2 376 59.3
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.7e-134 483.4 376 60.1
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.7e-134 483.4 376 59.8
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 8.5e-134 481.1 388 61.1
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 2.5e-133 479.6 376 59.0
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 5.5e-133 478.4 386 61.4
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 2.7e-132 476.1 387 61.0
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 4.7e-132 475.3 390 60.5
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 4.0e-131 472.2 382 61.8
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 5.2e-131 471.9 389 59.1
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 1.3e-129 467.2 380 62.9
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 2.2e-129 466.5 388 60.1
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 4.8e-129 465.3 380 62.4
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 3.1e-128 462.6 386 59.8
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 4.5e-127 458.8 385 59.7
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 4.5e-127 458.8 398 56.5
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 5.9e-127 458.4 381 59.8
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 2.2e-126 456.4 382 59.4
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 2.2e-126 456.4 384 60.9
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 3.8e-126 455.7 378 58.5
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 6.5e-126 454.9 376 58.5
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 5.5e-125 451.8 381 62.2
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 7.2e-125 451.4 385 56.4
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 7.2e-125 451.4 377 57.6
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 6.1e-124 448.4 386 59.1
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 2.0e-122 443.4 381 56.2
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 2.0e-122 443.4 378 57.1
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 2.6e-122 443.0 386 58.5
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 3.4e-122 442.6 382 56.3
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 3.4e-122 442.6 384 56.8
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 5.7e-122 441.8 381 55.4
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 5.7e-122 441.8 382 56.3
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 9.8e-122 441.0 381 55.4
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 1.3e-121 440.7 385 57.9
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 3.7e-121 439.1 380 56.8
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 4.8e-121 438.7 380 56.1
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.4e-120 437.2 378 55.8
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 2.4e-120 436.4 397 56.9
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 4.1e-120 435.6 378 55.8
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 9.1e-120 434.5 381 55.6
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 9.1e-120 434.5 378 55.6
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 1.6e-119 433.7 381 55.9
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 7.7e-119 431.4 378 56.6
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 1.0e-118 431.0 380 56.1
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.1e-117 427.6 380 52.4
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 1.5e-117 427.2 381 54.9
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 5.5e-117 425.2 398 55.5
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 5.5e-117 425.2 383 55.6
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 3.6e-116 422.5 382 52.1
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 4.7e-116 422.2 379 55.4
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 6.1e-116 421.8 380 53.4
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 8.0e-116 421.4 402 54.0
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 2.3e-115 419.9 402 53.2
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 3.0e-115 419.5 385 54.5
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 4.0e-115 419.1 382 54.5
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 6.8e-115 418.3 383 54.3
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 6.8e-115 418.3 383 54.3
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 8.8e-115 417.9 383 54.3
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 1.2e-114 417.5 383 54.0
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 2.0e-114 416.8 383 54.0
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 4.4e-114 415.6 380 53.2
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 5.7e-114 415.2 391 54.5
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 1.7e-113 413.7 324 63.0
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 2.2e-113 413.3 383 53.5
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 5.9e-111 405.2 348 55.5
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 1.0e-110 404.4 385 55.1
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 1.7e-105 387.1 310 57.1
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 1.4e-104 384.0 377 53.6
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 8.3e-97 358.2 371 52.8
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 9.2e-96 354.8 393 48.1
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 2.7e-95 353.2 379 47.0
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 6.0e-95 352.1 388 47.4
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 5.0e-94 349.0 395 46.3
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 6.6e-94 348.6 385 47.8
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 2.5e-93 346.7 386 48.4
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 5.6e-93 345.5 387 47.3
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 2.8e-92 343.2 396 46.7
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 2.6e-90 336.7 397 46.3
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 1.9e-85 320.5 382 46.1
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 3.6e-84 316.2 383 44.6
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 1.1e-83 314.7 396 45.5
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 1.1e-83 314.7 394 45.7
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 2.3e-83 313.5 381 44.4
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.0e-83 312.8 396 41.2
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 6.8e-83 312.0 267 58.8
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 1.2e-82 311.2 369 46.3
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 7.6e-82 308.5 378 42.9
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 7.1e-80 302.0 405 39.0
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 5.1e-78 295.8 347 45.2
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 5.1e-78 295.8 401 39.7
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 1.5e-74 284.3 242 55.4
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 2.0e-74 283.9 388 39.9
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 1.9e-72 277.3 277 54.2
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.1e-71 273.9 387 37.7
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 5.4e-64 249.2 320 42.8
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 3.9e-54 216.5 282 45.7
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 4.0e-51 206.5 376 32.2
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 3.3e-37 160.2 130 59.2
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 1.2e-31 141.7 153 50.3


User provided reference genes

Program Settings