Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g15290 Coffea canephora HOM05D006282 ORTHO05D007460 6.3e-35 150.2 75 100.0
Cc03_g13680 Coffea canephora HOM05D006282 ORTHO05D007460 5.0e-32 140.6 75 93.3
Cc00_g15280 Coffea canephora HOM05D006282 ORTHO05D007460 8.5e-32 139.8 75 93.3
Cc00_g33840 Coffea canephora HOM05D006282 ORTHO05D007460 9.4e-31 136.3 75 89.3
Oeu034174.1 Olea europaea HOM05D006282 ORTHO05D007460 3.1e-18 94.7 75 60.0
Gohir.D10G124600 Gossypium hirsutum HOM05D006282 ORTHO05D007460 9.1e-18 93.2 75 65.3
Gorai.011G137700 Gossypium raimondii HOM05D006282 ORTHO05D007460 9.1e-18 93.2 75 65.3
Oeu020810.1 Olea europaea HOM05D006282 ORTHO05D007460 1.2e-17 92.8 75 61.3
Gohir.A10G141900 Gossypium hirsutum HOM05D006282 ORTHO05D007460 1.6e-17 92.4 75 64.0
COL.COLO4_10135 Corchorus olitorius HOM05D006282 ORTHO05D007460 5.9e-17 90.5 76 61.8
Thecc.04G169300 Theobroma cacao HOM05D006282 ORTHO05D007460 7.7e-17 90.1 75 60.0
Ciclev10023861m.g Citrus clementina HOM05D006282 ORTHO05D007460 1.3e-16 89.4 78 62.8
Gohir.A10G142000 Gossypium hirsutum HOM05D006282 ORTHO05D007460 1.7e-16 89.0 75 57.3
Manes.11G128100 Manihot esculenta HOM05D006282 ORTHO05D007460 1.7e-16 89.0 75 58.7
Hma1.2p1_0324F.1_g125760 Hydrangea macrophylla HOM05D006282 ORTHO05D007460 2.2e-16 88.6 75 58.7
Gohir.D10G124500 Gossypium hirsutum HOM05D006282 ORTHO05D007460 2.9e-16 88.2 75 56.0
Oeu023771.1 Olea europaea HOM05D006282 ORTHO05D007460 3.8e-16 87.8 75 57.3
Gorai.011G137600 Gossypium raimondii HOM05D006282 ORTHO05D007460 5.0e-16 87.4 75 56.0
Manes.04G048673 Manihot esculenta HOM05D006282 ORTHO05D007460 5.0e-16 87.4 71 62.0
Thecc.04G169400 Theobroma cacao HOM05D006282 ORTHO05D007460 1.1e-15 86.3 75 61.3
Ciclev10023163m.g Citrus clementina HOM05D006282 ORTHO05D007460 2.5e-15 85.1 78 57.7
Hma1.2p1_0807F.1_g221500 Hydrangea macrophylla HOM05D006282 ORTHO05D007460 2.5e-15 85.1 75 57.3
Oeu016605.1 Olea europaea HOM05D006282 ORTHO05D007460 3.2e-15 84.7 75 53.3
Nn1g09678 Nelumbo nucifera HOM05D006282 ORTHO05D007460 5.5e-15 84.0 75 56.0
Oeu016604.1 Olea europaea HOM05D006282 ORTHO05D007460 5.5e-15 84.0 75 53.3
PGSC0003DMG400014649 Solanum tuberosum HOM05D006282 ORTHO05D007460 5.5e-15 84.0 76 56.6
Cfa015252 Carpinus fangiana HOM05D006282 ORTHO05D007460 2.1e-14 82.0 75 56.0
Cfa015253 Carpinus fangiana HOM05D006282 ORTHO05D007460 2.7e-14 81.6 75 57.3
Migut.N03076 Erythranthe guttata HOM05D006282 ORTHO05D007460 4.7e-14 80.9 76 52.6
Gorai.005G124500 Gossypium raimondii HOM05D006282 ORTHO05D007460 1.0e-13 79.7 76 57.9
Manes.04G046449 Manihot esculenta HOM05D006282 ORTHO05D007460 1.0e-13 79.7 71 56.3
Manes.04G047561 Manihot esculenta HOM05D006282 ORTHO05D007460 1.0e-13 79.7 71 54.9
TWI63G0935 Tripterygium wilfordii HOM05D006282 ORTHO05D007460 1.4e-13 79.3 72 63.9
Cfa015249 Carpinus fangiana HOM05D006282 ORTHO05D007460 2.3e-13 78.6 75 53.3
Gohir.A02G091500 Gossypium hirsutum HOM05D006282 ORTHO05D007460 4.0e-13 77.8 76 56.6
Prupe.1G203300 Prunus persica HOM05D006282 ORTHO05D007460 5.2e-13 77.4 83 54.2
Hma1.2p1_3261F.1_g334650 Hydrangea macrophylla HOM05D006282 ORTHO05D007460 6.8e-13 77.0 75 53.3
Rhsim02G0083100 Rhododendron simsii HOM05D006282 ORTHO05D007460 6.8e-13 77.0 67 56.7
Cfa015231 Carpinus fangiana HOM05D006282 ORTHO05D007460 8.8e-13 76.6 75 53.3
Cfa015244 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.2e-12 76.3 75 50.7
CiPaw.01G172100 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.2e-12 76.3 72 58.3
QL10p052782 Quercus lobata HOM05D006282 ORTHO05D007460 1.2e-12 76.3 74 51.4
Sopen08g004950 Solanum pennellii HOM05D006282 ORTHO05D007460 1.2e-12 76.3 76 50.0
CiPaw.01G172600 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.5e-12 75.9 72 58.3
CiPaw.02G102600 Carya illinoinensis HOM05D006282 ORTHO05D007460 2.0e-12 75.5 78 56.4
MBI07_g38403_MAGBIO Magnolia biondii HOM05D006282 ORTHO05D007460 2.0e-12 75.5 75 52.0
Manes.04G045337 Manihot esculenta HOM05D006282 ORTHO05D007460 2.0e-12 75.5 66 57.6
CiPaw.01G172200 Carya illinoinensis HOM05D006282 ORTHO05D007460 2.6e-12 75.1 72 56.9
Lalb_Chr08g0233621 Lupinus albus HOM05D006282 ORTHO05D007460 2.6e-12 75.1 70 55.7
Atru.chr4.1364 Acer truncatum HOM05D006282 ORTHO05D007460 3.4e-12 74.7 68 57.4
Cfa015251 Carpinus fangiana HOM05D006282 ORTHO05D007460 3.4e-12 74.7 76 55.3
CiPaw.01G172500 Carya illinoinensis HOM05D006282 ORTHO05D007460 3.4e-12 74.7 72 56.9
QL10p052881 Quercus lobata HOM05D006282 ORTHO05D007460 4.4e-12 74.3 74 52.7
QL10p052931 Quercus lobata HOM05D006282 ORTHO05D007460 4.4e-12 74.3 74 50.0
QL10p052886 Quercus lobata HOM05D006282 ORTHO05D007460 5.7e-12 73.9 74 51.4
QL10p052947 Quercus lobata HOM05D006282 ORTHO05D007460 5.7e-12 73.9 74 48.6
Cfa015245 Carpinus fangiana HOM05D006282 ORTHO05D007460 7.5e-12 73.6 75 52.0
Cfa015246 Carpinus fangiana HOM05D006282 ORTHO05D007460 7.5e-12 73.6 75 52.0
QL10p053038 Quercus lobata HOM05D006282 ORTHO05D007460 9.7e-12 73.2 70 55.7
Sopen04g030460 Solanum pennellii HOM05D006282 ORTHO05D007460 1.3e-11 72.8 76 50.0
TAR362G0908 Trochodendron aralioides HOM05D006282 ORTHO05D007460 1.3e-11 72.8 70 52.9
CiPaw.01G201300 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.7e-11 72.4 77 54.5
CiPaw.02G102800 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.7e-11 72.4 77 50.6
Gohir.D02G109100 Gossypium hirsutum HOM05D006282 ORTHO05D007460 1.7e-11 72.4 76 55.3
QL10p052970 Quercus lobata HOM05D006282 ORTHO05D007460 1.7e-11 72.4 66 56.1
Prupe.1G203400 Prunus persica HOM05D006282 ORTHO05D007460 2.8e-11 71.6 72 54.2
QL10p053002 Quercus lobata HOM05D006282 ORTHO05D007460 2.8e-11 71.6 71 50.7
Sed0024901 Sechium edule HOM05D006282 ORTHO05D007460 2.8e-11 71.6 76 50.0
Solyc04g076730.1 Solanum lycopersicum HOM05D006282 ORTHO05D007460 2.8e-11 71.6 76 48.7
CsaV3_4G002680 Cucumis sativus L. HOM05D006282 ORTHO05D007460 3.7e-11 71.2 76 48.7
Cfa015254 Carpinus fangiana HOM05D006282 ORTHO05D007460 4.8e-11 70.9 76 55.3
CiPaw.02G102700 Carya illinoinensis HOM05D006282 ORTHO05D007460 4.8e-11 70.9 78 47.4
QL10p052968 Quercus lobata HOM05D006282 ORTHO05D007460 4.8e-11 70.9 71 50.7
PGSC0003DMG400006400 Solanum tuberosum HOM05D006282 ORTHO05D007460 4.8e-11 70.9 76 48.7
QL10p052996 Quercus lobata HOM05D006282 ORTHO05D007460 6.3e-11 70.5 71 50.7
Cfa015248 Carpinus fangiana HOM05D006282 ORTHO05D007460 8.3e-11 70.1 75 52.0
Potri.016G099600 Populus trichocarpa HOM05D006282 ORTHO05D007460 8.3e-11 70.1 77 51.9
MELO3C017773.2 Cucumis melo HOM05D006282 ORTHO05D007460 1.1e-10 69.7 71 53.5
QL10p053004 Quercus lobata HOM05D006282 ORTHO05D007460 1.1e-10 69.7 66 54.5
CiPaw.01G033300 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.4e-10 69.3 77 51.9
CiPaw.01G172000 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.8e-10 68.9 73 56.2
CiPaw.01G172400 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.8e-10 68.9 73 56.2
Lalb_Chr11g0073031 Lupinus albus HOM05D006282 ORTHO05D007460 1.8e-10 68.9 81 51.9
Cfa015238 Carpinus fangiana HOM05D006282 ORTHO05D007460 3.1e-10 68.2 75 50.7
CiPaw.05G255000 Carya illinoinensis HOM05D006282 ORTHO05D007460 3.1e-10 68.2 73 54.8
QL10p052856 Quercus lobata HOM05D006282 ORTHO05D007460 3.1e-10 68.2 74 47.3
QL10p052897 Quercus lobata HOM05D006282 ORTHO05D007460 3.1e-10 68.2 71 49.3
Cfa015242 Carpinus fangiana HOM05D006282 ORTHO05D007460 4.1e-10 67.8 69 50.7
CiPaw.01G172700 Carya illinoinensis HOM05D006282 ORTHO05D007460 5.3e-10 67.4 73 56.2
Cfa015237 Carpinus fangiana HOM05D006282 ORTHO05D007460 7.0e-10 67.0 71 49.3
QL10p052979 Quercus lobata HOM05D006282 ORTHO05D007460 7.0e-10 67.0 71 49.3
Cfa015232 Carpinus fangiana HOM05D006282 ORTHO05D007460 9.1e-10 66.6 76 50.0
QL10p052834 Quercus lobata HOM05D006282 ORTHO05D007460 9.1e-10 66.6 71 47.9
ClCG07G015130 Citrullus lanatus HOM05D002360 ORTHO05D006971 1.2e-09 66.2 75 45.3
MELO3C032848.2 Cucumis melo HOM05D006282 ORTHO05D007460 1.6e-09 65.9 79 44.3
Eucgr.H00330 Eucalyptus grandis HOM05D006282 ORTHO05D007460 1.6e-09 65.9 79 48.1
QL10p053061 Quercus lobata HOM05D006282 ORTHO05D007460 2.0e-09 65.5 73 52.1
arahy.Tifrunner.gnm1.ann1.HGL526 Arachis hypogaea HOM05D006282 ORTHO05D007460 2.7e-09 65.1 64 54.7
MBI07_g38402_MAGBIO Magnolia biondii HOM05D006282 ORTHO05D007460 2.7e-09 65.1 70 51.4
Peaxi162Scf00075g01414 Petunia axillaris HOM05D006282 ORTHO05D007460 1.3e-08 62.8 66 43.9
QL10p053030 Quercus lobata HOM05D006282 ORTHO05D007460 1.3e-08 62.8 63 50.8
Cfa015241 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.7e-08 62.4 78 47.4
Phvul.011G051600 Phaseolus vulgaris HOM05D006282 ORTHO05D007460 5.0e-08 60.8 81 49.4
Sed0000720 Sechium edule HOM05D006282 ORTHO05D007460 5.0e-08 60.8 78 43.6
CsaV3_4G002840 Cucumis sativus L. HOM05D006282 ORTHO05D007460 8.5e-08 60.1 82 41.5
Glyma.12G049300 Glycine max HOM05D006282 ORTHO05D007460 8.5e-08 60.1 81 48.1
Glyma.11G124700 Glycine max HOM05D006282 ORTHO05D007460 1.1e-07 59.7 76 43.4
Lsat_1_v5_gn_9_60260 Lactuca sativa HOM05D006282 ORTHO05D007460 1.1e-07 59.7 72 45.8
ClCG07G015250 Citrullus lanatus HOM05D006282 ORTHO05D007460 1.9e-07 58.9 77 41.6
TPR.G34221 Trifolium pratense HOM05D006282 ORTHO05D007460 1.9e-07 58.9 84 46.4
TPR.G34185 Trifolium pratense HOM05D006282 ORTHO05D007460 2.5e-07 58.5 84 45.2
Nn1g09677 Nelumbo nucifera HOM05D006282 ORTHO05D007460 3.2e-07 58.2 69 47.8
arahy.Tifrunner.gnm1.ann1.RU422H Arachis hypogaea HOM05D006282 ORTHO05D007460 4.2e-07 57.8 75 45.3
Medtr4g068220 Medicago truncatula HOM05D006282 ORTHO05D007460 4.2e-07 57.8 79 43.0
MELO3C027180.2 Cucumis melo HOM05D064062 ORTHO05D007460 7.2e-07 57.0 77 40.3
MBI07_g38404_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.2e-07 57.0 51 54.9
Nn1g09676 Nelumbo nucifera HOM05D006282 ORTHO05D007460 2.1e-06 55.5 78 44.9
AUR62023815 Chenopodium quinoa HOM05D020500 ORTHO05D021210 2.7e-06 55.1 66 47.0


User provided reference genes

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