Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g15280 Coffea canephora HOM05D006282 ORTHO05D007460 4.8e-35 150.6 75 100.0
Cc03_g13680 Coffea canephora HOM05D006282 ORTHO05D007460 2.0e-33 145.2 75 97.3
Cc00_g15290 Coffea canephora HOM05D006282 ORTHO05D007460 6.5e-32 140.2 75 93.3
Cc00_g33840 Coffea canephora HOM05D006282 ORTHO05D007460 8.5e-32 139.8 75 92.0
Oeu034174.1 Olea europaea HOM05D006282 ORTHO05D007460 5.3e-18 94.0 75 60.0
Ciclev10023861m.g Citrus clementina HOM05D006282 ORTHO05D007460 5.9e-17 90.5 78 64.1
Oeu020810.1 Olea europaea HOM05D006282 ORTHO05D007460 1.0e-16 89.7 75 60.0
Gohir.D10G124600 Gossypium hirsutum HOM05D006282 ORTHO05D007460 6.5e-16 87.0 75 62.7
Gorai.011G137700 Gossypium raimondii HOM05D006282 ORTHO05D007460 6.5e-16 87.0 75 62.7
Hma1.2p1_0324F.1_g125760 Hydrangea macrophylla HOM05D006282 ORTHO05D007460 8.5e-16 86.7 75 58.7
Gohir.A10G141900 Gossypium hirsutum HOM05D006282 ORTHO05D007460 1.1e-15 86.3 75 61.3
Manes.11G128100 Manihot esculenta HOM05D006282 ORTHO05D007460 1.1e-15 86.3 75 58.7
Oeu023771.1 Olea europaea HOM05D006282 ORTHO05D007460 1.1e-15 86.3 75 57.3
COL.COLO4_10135 Corchorus olitorius HOM05D006282 ORTHO05D007460 1.9e-15 85.5 76 60.5
Thecc.04G169300 Theobroma cacao HOM05D006282 ORTHO05D007460 2.5e-15 85.1 75 58.7
Gohir.A10G142000 Gossypium hirsutum HOM05D006282 ORTHO05D007460 4.2e-15 84.3 75 56.0
Gohir.D10G124500 Gossypium hirsutum HOM05D006282 ORTHO05D007460 7.2e-15 83.6 75 54.7
Hma1.2p1_0807F.1_g221500 Hydrangea macrophylla HOM05D006282 ORTHO05D007460 9.4e-15 83.2 75 57.3
Oeu016605.1 Olea europaea HOM05D006282 ORTHO05D007460 9.4e-15 83.2 75 53.3
Gorai.011G137600 Gossypium raimondii HOM05D006282 ORTHO05D007460 1.2e-14 82.8 75 54.7
Oeu016604.1 Olea europaea HOM05D006282 ORTHO05D007460 1.6e-14 82.4 75 53.3
Manes.04G048673 Manihot esculenta HOM05D006282 ORTHO05D007460 2.1e-14 82.0 71 59.2
PGSC0003DMG400014649 Solanum tuberosum HOM05D006282 ORTHO05D007460 2.1e-14 82.0 76 56.6
Cfa015252 Carpinus fangiana HOM05D006282 ORTHO05D007460 3.6e-14 81.3 75 56.0
Thecc.04G169400 Theobroma cacao HOM05D006282 ORTHO05D007460 3.6e-14 81.3 75 60.0
Migut.N03076 Erythranthe guttata HOM05D006282 ORTHO05D007460 6.1e-14 80.5 76 53.9
Cfa015253 Carpinus fangiana HOM05D006282 ORTHO05D007460 8.0e-14 80.1 75 56.0
Ciclev10023163m.g Citrus clementina HOM05D006282 ORTHO05D007460 8.0e-14 80.1 78 56.4
Nn1g09678 Nelumbo nucifera HOM05D006282 ORTHO05D007460 2.3e-13 78.6 75 53.3
Manes.04G046449 Manihot esculenta HOM05D006282 ORTHO05D007460 4.0e-13 77.8 71 54.9
Cfa015246 Carpinus fangiana HOM05D006282 ORTHO05D007460 5.2e-13 77.4 75 54.7
Cfa015249 Carpinus fangiana HOM05D006282 ORTHO05D007460 8.8e-13 76.6 75 52.0
CiPaw.02G102800 Carya illinoinensis HOM05D006282 ORTHO05D007460 8.8e-13 76.6 77 53.2
QL10p052782 Quercus lobata HOM05D006282 ORTHO05D007460 1.5e-12 75.9 74 51.4
Cfa015244 Carpinus fangiana HOM05D006282 ORTHO05D007460 2.0e-12 75.5 75 50.7
Prupe.1G203300 Prunus persica HOM05D006282 ORTHO05D007460 2.0e-12 75.5 83 54.2
Cfa015231 Carpinus fangiana HOM05D006282 ORTHO05D007460 3.4e-12 74.7 75 52.0
Gorai.005G124500 Gossypium raimondii HOM05D006282 ORTHO05D007460 3.4e-12 74.7 76 56.6
Hma1.2p1_3261F.1_g334650 Hydrangea macrophylla HOM05D006282 ORTHO05D007460 3.4e-12 74.7 75 53.3
Rhsim02G0083100 Rhododendron simsii HOM05D006282 ORTHO05D007460 3.4e-12 74.7 67 55.2
Manes.04G047561 Manihot esculenta HOM05D006282 ORTHO05D007460 4.4e-12 74.3 71 53.5
QL10p052881 Quercus lobata HOM05D006282 ORTHO05D007460 4.4e-12 74.3 74 52.7
Sopen08g004950 Solanum pennellii HOM05D006282 ORTHO05D007460 4.4e-12 74.3 76 50.0
QL10p052931 Quercus lobata HOM05D006282 ORTHO05D007460 5.7e-12 73.9 74 50.0
MBI07_g38403_MAGBIO Magnolia biondii HOM05D006282 ORTHO05D007460 7.5e-12 73.6 75 52.0
QL10p052886 Quercus lobata HOM05D006282 ORTHO05D007460 7.5e-12 73.6 74 51.4
QL10p052947 Quercus lobata HOM05D006282 ORTHO05D007460 7.5e-12 73.6 74 48.6
Cfa015251 Carpinus fangiana HOM05D006282 ORTHO05D007460 9.7e-12 73.2 76 53.9
CiPaw.01G172100 Carya illinoinensis HOM05D006282 ORTHO05D007460 9.7e-12 73.2 72 56.9
CiPaw.01G172600 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.3e-11 72.8 72 56.9
Gohir.A02G091500 Gossypium hirsutum HOM05D006282 ORTHO05D007460 1.3e-11 72.8 76 55.3
QL10p053038 Quercus lobata HOM05D006282 ORTHO05D007460 1.3e-11 72.8 70 54.3
TAR362G0908 Trochodendron aralioides HOM05D006282 ORTHO05D007460 1.3e-11 72.8 70 52.9
Cfa015245 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.7e-11 72.4 75 52.0
Manes.04G045337 Manihot esculenta HOM05D006282 ORTHO05D007460 1.7e-11 72.4 66 57.6
CiPaw.01G172200 Carya illinoinensis HOM05D006282 ORTHO05D007460 2.2e-11 72.0 72 55.6
CiPaw.01G172500 Carya illinoinensis HOM05D006282 ORTHO05D007460 2.8e-11 71.6 72 55.6
TWI63G0935 Tripterygium wilfordii HOM05D006282 ORTHO05D007460 3.7e-11 71.2 72 58.3
Prupe.1G203400 Prunus persica HOM05D006282 ORTHO05D007460 6.3e-11 70.5 72 54.2
CiPaw.02G102600 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.1e-10 69.7 78 53.8
Lalb_Chr08g0233621 Lupinus albus HOM05D006282 ORTHO05D007460 1.1e-10 69.7 70 52.9
QL10p052970 Quercus lobata HOM05D006282 ORTHO05D007460 1.1e-10 69.7 66 54.5
Cfa015254 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.4e-10 69.3 76 53.9
QL10p053004 Quercus lobata HOM05D006282 ORTHO05D007460 1.4e-10 69.3 66 53.0
Atru.chr4.1364 Acer truncatum HOM05D006282 ORTHO05D007460 1.8e-10 68.9 68 54.4
Sopen04g030460 Solanum pennellii HOM05D006282 ORTHO05D007460 1.8e-10 68.9 77 51.9
Cfa015248 Carpinus fangiana HOM05D006282 ORTHO05D007460 2.4e-10 68.6 75 52.0
Cfa015237 Carpinus fangiana HOM05D006282 ORTHO05D007460 3.1e-10 68.2 72 50.0
Potri.016G099600 Populus trichocarpa HOM05D006282 ORTHO05D007460 4.1e-10 67.8 77 50.6
QL10p052856 Quercus lobata HOM05D006282 ORTHO05D007460 4.1e-10 67.8 74 47.3
Solyc04g076730.1 Solanum lycopersicum HOM05D006282 ORTHO05D007460 4.1e-10 67.8 77 50.6
Gohir.D02G109100 Gossypium hirsutum HOM05D006282 ORTHO05D007460 5.3e-10 67.4 76 53.9
QL10p052897 Quercus lobata HOM05D006282 ORTHO05D007460 5.3e-10 67.4 71 49.3
CiPaw.01G172000 Carya illinoinensis HOM05D006282 ORTHO05D007460 7.0e-10 67.0 73 54.8
CiPaw.01G172400 Carya illinoinensis HOM05D006282 ORTHO05D007460 7.0e-10 67.0 73 54.8
Sed0024901 Sechium edule HOM05D006282 ORTHO05D007460 7.0e-10 67.0 75 42.7
CiPaw.01G033300 Carya illinoinensis HOM05D006282 ORTHO05D007460 9.1e-10 66.6 77 51.9
CiPaw.01G201300 Carya illinoinensis HOM05D006282 ORTHO05D007460 9.1e-10 66.6 77 51.9
PGSC0003DMG400006400 Solanum tuberosum HOM05D006282 ORTHO05D007460 9.1e-10 66.6 77 50.6
CiPaw.02G102700 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.2e-09 66.2 78 46.2
Cfa015242 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.6e-09 65.9 72 48.6
QL10p052834 Quercus lobata HOM05D006282 ORTHO05D007460 1.6e-09 65.9 71 47.9
QL10p053002 Quercus lobata HOM05D006282 ORTHO05D007460 1.6e-09 65.9 71 47.9
QL10p053061 Quercus lobata HOM05D006282 ORTHO05D007460 1.6e-09 65.9 73 52.1
Cfa015238 Carpinus fangiana HOM05D006282 ORTHO05D007460 2.0e-09 65.5 75 49.3
CsaV3_4G002680 Cucumis sativus L. HOM05D006282 ORTHO05D007460 2.0e-09 65.5 75 41.3
ClCG07G015130 Citrullus lanatus HOM05D002360 ORTHO05D006971 2.7e-09 65.1 74 39.2
QL10p052968 Quercus lobata HOM05D006282 ORTHO05D007460 2.7e-09 65.1 71 47.9
CiPaw.01G172700 Carya illinoinensis HOM05D006282 ORTHO05D007460 3.5e-09 64.7 73 54.8
Lalb_Chr11g0073031 Lupinus albus HOM05D006282 ORTHO05D007460 3.5e-09 64.7 81 50.6
QL10p052996 Quercus lobata HOM05D006282 ORTHO05D007460 3.5e-09 64.7 71 47.9
MELO3C017773.2 Cucumis melo HOM05D006282 ORTHO05D007460 7.7e-09 63.5 71 49.3
MELO3C032848.2 Cucumis melo HOM05D006282 ORTHO05D007460 7.7e-09 63.5 79 43.0
MBI07_g38402_MAGBIO Magnolia biondii HOM05D006282 ORTHO05D007460 7.7e-09 63.5 70 51.4
Cfa015232 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.0e-08 63.2 76 47.4
Eucgr.H00330 Eucalyptus grandis HOM05D006282 ORTHO05D007460 1.0e-08 63.2 79 48.1
CiPaw.05G255000 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.7e-08 62.4 73 52.1
Peaxi162Scf00075g01414 Petunia axillaris HOM05D006282 ORTHO05D007460 2.2e-08 62.0 65 44.6
QL10p052979 Quercus lobata HOM05D006282 ORTHO05D007460 3.8e-08 61.2 71 46.5
Sed0000720 Sechium edule HOM05D006282 ORTHO05D007460 6.5e-08 60.5 78 43.6
Cfa015241 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.1e-07 59.7 78 46.2
arahy.Tifrunner.gnm1.ann1.HGL526 Arachis hypogaea HOM05D006282 ORTHO05D007460 1.5e-07 59.3 64 50.0
QL10p053030 Quercus lobata HOM05D006282 ORTHO05D007460 3.2e-07 58.2 62 48.4
Phvul.011G051600 Phaseolus vulgaris HOM05D006282 ORTHO05D007460 7.2e-07 57.0 81 48.1
ClCG07G015250 Citrullus lanatus HOM05D006282 ORTHO05D007460 9.4e-07 56.6 77 40.3
AUR62023815 Chenopodium quinoa HOM05D020500 ORTHO05D021210 1.2e-06 56.2 66 47.0
Nn1g09677 Nelumbo nucifera HOM05D006282 ORTHO05D007460 1.2e-06 56.2 69 47.8
Lsat_1_v5_gn_9_60260 Lactuca sativa HOM05D006282 ORTHO05D007460 1.6e-06 55.8 71 43.7
arahy.Tifrunner.gnm1.ann1.RU422H Arachis hypogaea HOM05D006282 ORTHO05D007460 2.1e-06 55.5 74 44.6
Glyma.11G124700 Glycine max HOM05D006282 ORTHO05D007460 2.1e-06 55.5 76 42.1
Glyma.12G049300 Glycine max HOM05D006282 ORTHO05D007460 2.1e-06 55.5 81 46.9
MBI07_g38404_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.1e-06 55.5 51 54.9
CsaV3_4G002840 Cucumis sativus L. HOM05D006282 ORTHO05D007460 2.7e-06 55.1 82 39.0
QL10p053025 Quercus lobata HOM05D006282 ORTHO05D007460 3.6e-06 54.7 72 47.2
QL10p053034 Quercus lobata HOM05D006282 ORTHO05D007460 3.6e-06 54.7 68 47.1
TPR.G34221 Trifolium pratense HOM05D006282 ORTHO05D007460 3.6e-06 54.7 84 45.2
TPR.G34185 Trifolium pratense HOM05D006282 ORTHO05D007460 4.7e-06 54.3 84 44.0
AUR62002617 Chenopodium quinoa HOM05D020500 ORTHO05D021210 8.0e-06 53.5 75 40.0
Medtr4g068220 Medicago truncatula HOM05D006282 ORTHO05D007460 8.0e-06 53.5 79 41.8


User provided reference genes

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