Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 1.0e-60 236.5 116 100.0
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 2.6e-56 221.9 116 92.2
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 1.7e-55 219.2 114 92.1
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.9e-55 218.4 114 91.2
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 4.9e-55 217.6 114 91.2
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 4.9e-55 217.6 114 91.2
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.1e-54 216.5 114 90.4
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.1e-54 216.5 114 90.4
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 1.1e-54 216.5 114 90.4
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 1.4e-54 216.1 114 90.4
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.1e-53 212.2 114 89.5
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 3.5e-53 211.5 114 89.5
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 3.9e-52 208.0 111 88.3
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 6.7e-52 207.2 116 86.2
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 1.5e-51 206.1 116 86.2
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 2.5e-51 205.3 116 87.9
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 3.3e-51 204.9 111 87.4
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 2.2e-50 202.2 116 86.2
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 6.3e-50 200.7 111 86.5
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 2.4e-49 198.7 115 82.6
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 5.3e-49 197.6 116 79.3
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 9.0e-49 196.8 116 81.0
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 2.0e-48 195.7 116 79.3
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 2.6e-48 195.3 116 80.2
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 3.4e-48 194.9 116 79.3
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 4.5e-48 194.5 112 81.2
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 4.5e-48 194.5 116 79.3
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 5.9e-48 194.1 112 83.9
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 5.9e-48 194.1 116 78.4
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 7.7e-48 193.7 114 82.5
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 7.7e-48 193.7 116 82.8
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 7.7e-48 193.7 116 79.3
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 1.7e-47 192.6 112 82.1
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 1.7e-47 192.6 116 78.4
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 2.2e-47 192.2 111 81.1
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 2.2e-47 192.2 116 79.3
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 2.9e-47 191.8 112 80.4
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 2.9e-47 191.8 115 79.1
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 2.9e-47 191.8 116 77.6
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 2.9e-47 191.8 116 79.3
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 2.9e-47 191.8 113 81.4
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 3.8e-47 191.4 111 81.1
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 3.8e-47 191.4 116 78.4
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 3.8e-47 191.4 111 81.1
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 5.0e-47 191.0 112 81.2
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 6.5e-47 190.7 115 76.5
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 6.5e-47 190.7 112 79.5
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 8.5e-47 190.3 116 77.6
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 1.1e-46 189.9 114 77.2
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 1.1e-46 189.9 109 82.6
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 1.4e-46 189.5 116 79.3
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 1.9e-46 189.1 116 78.4
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 2.5e-46 188.7 111 78.4
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 2.5e-46 188.7 112 80.4
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 3.2e-46 188.3 116 80.2
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 5.5e-46 187.6 116 75.0
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 7.2e-46 187.2 114 78.1
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 7.2e-46 187.2 109 80.7
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 7.2e-46 187.2 111 77.5
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 1.2e-45 186.4 114 79.8
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 2.7e-45 185.3 116 77.6
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 2.7e-45 185.3 116 77.6
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 7.9e-45 183.7 111 76.6
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 7.9e-45 183.7 109 79.8
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 1.0e-44 183.3 111 77.5
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 1.0e-44 183.3 111 79.3
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 1.4e-44 183.0 116 76.7
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 1.4e-44 183.0 116 76.7
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 1.4e-44 183.0 116 75.9
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 1.8e-44 182.6 111 75.7
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 1.8e-44 182.6 111 75.7
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 1.8e-44 182.6 111 78.4
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 2.3e-44 182.2 117 76.1
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 3.0e-44 181.8 111 75.7
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 3.0e-44 181.8 111 76.6
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 3.0e-44 181.8 111 77.5
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 3.0e-44 181.8 116 75.9
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 3.9e-44 181.4 116 75.9
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 3.9e-44 181.4 111 75.7
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 8.8e-44 180.3 111 76.6
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 8.8e-44 180.3 111 75.7
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 8.8e-44 180.3 116 72.4
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 8.8e-44 180.3 116 75.0
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 1.1e-43 179.9 116 76.7
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 1.5e-43 179.5 116 74.1
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 9.7e-43 176.8 112 74.1
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 1.3e-42 176.4 111 73.9
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 1.3e-42 176.4 111 73.9
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 3.7e-42 174.9 113 74.3
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 8.2e-42 173.7 116 75.0
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 1.8e-41 172.6 115 72.2
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 1.8e-41 172.6 140 64.3
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 4.1e-41 171.4 126 65.9
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 5.3e-41 171.0 115 71.3
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 3.4e-40 168.3 111 71.2
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 4.5e-40 167.9 132 62.9
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 2.9e-39 165.2 116 67.2
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 3.8e-39 164.9 111 70.3
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 8.5e-39 163.7 109 71.6
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 2.5e-38 162.2 102 73.5
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 3.2e-38 161.8 101 76.2
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.0e-36 156.8 108 69.4
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.5e-35 152.9 108 68.5
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 5.7e-35 151.0 109 64.2
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 5.7e-35 151.0 103 70.9
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 7.4e-35 150.6 109 66.1
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 2.8e-34 148.7 108 67.6
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 4.8e-34 147.9 86 77.9
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.8e-33 146.0 86 80.2
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 2.0e-32 142.5 134 57.5
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 3.5e-32 141.7 86 74.4
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 1.0e-31 140.2 74 93.2
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 7.2e-30 134.0 81 81.5
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 7.2e-30 134.0 179 45.8
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 9.4e-30 133.7 88 72.7
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 9.4e-30 133.7 111 57.7
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 8.8e-28 127.1 111 51.4
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 1.1e-27 126.7 110 53.6
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 2.6e-27 125.6 75 80.0
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 2.6e-27 125.6 75 80.0
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 2.2e-26 122.5 67 83.6
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 2.4e-25 119.0 70 81.4
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.3e-23 113.2 76 69.7
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 3.8e-23 111.7 72 68.1
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 3.2e-22 108.6 70 74.3
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 1.2e-21 106.7 112 50.0
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 4.0e-20 101.7 61 82.0
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 8.8e-20 100.5 82 59.8
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 2.0e-19 99.4 137 37.2
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 4.4e-19 98.2 59 74.6
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 1.4e-17 93.2 54 85.2
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 1.8e-17 92.8 56 75.0
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 2.1e-13 79.3 48 79.2
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 3.0e-12 75.5 41 78.0
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 8.3e-10 67.4 58 56.9
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 5.4e-09 64.7 60 53.3
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 5.0e-07 58.2 38 68.4


User provided reference genes

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