Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 3.0e-290 1001.1 501 100.0
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 7.6e-161 571.2 566 61.7
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 1.7e-144 516.9 476 62.6
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 9.1e-106 388.3 593 43.7
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 1.2e-105 387.9 562 44.0
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 1.7e-104 384.0 558 45.0
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 2.6e-100 370.2 558 43.7
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 4.1e-98 362.8 586 41.6
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 2.7e-97 360.1 580 41.0
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 7.8e-97 358.6 594 40.7
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 5.0e-96 355.9 580 40.9
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 9.5e-95 351.7 581 41.3
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 8.0e-94 348.6 619 38.6
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 3.4e-92 343.2 547 41.7
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 4.4e-92 342.8 564 41.7
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.9e-90 337.4 568 40.5
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 3.2e-90 336.7 537 42.6
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 5.4e-90 335.9 545 41.1
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 9.2e-90 335.1 534 42.3
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 1.2e-89 334.7 550 41.6
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 1.6e-89 334.3 566 40.8
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.7e-89 333.6 593 39.8
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 3.5e-89 333.2 586 40.8
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 2.3e-88 330.5 594 38.7
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 6.6e-88 328.9 580 39.5
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 1.9e-87 327.4 543 41.3
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 9.5e-87 325.1 578 38.9
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 9.5e-87 325.1 580 38.8
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 1.2e-86 324.7 535 42.1
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 1.2e-86 324.7 562 40.0
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 1.6e-86 324.3 532 41.9
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 2.1e-86 323.9 580 39.1
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 2.1e-86 323.9 561 40.1
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 6.2e-86 322.4 539 41.4
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 8.0e-86 322.0 580 39.3
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 1.1e-85 321.6 541 41.2
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 1.4e-85 321.2 568 39.3
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 1.2e-84 318.2 577 38.0
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 1.2e-84 318.2 585 38.3
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 1.5e-84 317.8 567 39.5
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.5e-84 317.8 580 39.0
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 1.5e-84 317.8 606 37.8
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 5.8e-84 315.8 564 39.7
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 9.8e-84 315.1 539 41.0
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 1.3e-83 314.7 513 40.7
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 1.3e-83 314.7 581 37.9
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 2.2e-83 313.9 576 37.3
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 2.9e-83 313.5 538 40.9
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 2.9e-83 313.5 544 38.4
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 4.9e-83 312.8 586 38.4
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 6.4e-83 312.4 542 41.0
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 8.3e-83 312.0 500 42.0
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 1.1e-82 311.6 562 40.0
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 1.9e-82 310.8 587 38.2
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 2.4e-82 310.5 541 40.7
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 7.1e-82 308.9 555 40.5
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 7.1e-82 308.9 508 41.5
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 7.8e-81 305.4 577 37.3
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 5.1e-80 302.8 581 37.9
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 5.1e-80 302.8 553 39.6
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 8.6e-80 302.0 542 39.3
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 1.2e-78 298.1 548 38.3
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 2.8e-78 297.0 577 36.6
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 8.9e-77 292.0 582 36.1
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 5.8e-76 289.3 580 35.9
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 1.7e-75 287.7 573 37.9
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 1.4e-74 284.6 659 36.3
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 4.1e-74 283.1 594 36.4
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 3.5e-73 280.0 527 36.8
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 3.5e-73 280.0 578 37.4
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 3.5e-73 280.0 551 38.5
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 6.0e-73 279.3 575 36.5
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 5.1e-72 276.2 584 36.3
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 8.6e-72 275.4 557 37.5
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.0e-68 264.2 547 37.3
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 2.6e-68 263.8 571 33.8
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 4.4e-68 263.1 550 34.4
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 1.7e-67 261.2 465 39.4
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 3.8e-67 260.0 570 36.1
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 4.9e-67 259.6 595 34.3
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 4.2e-66 256.5 572 35.3
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.1e-62 244.2 419 38.7
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 1.8e-61 241.1 523 37.3
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 2.9e-59 233.8 466 36.9
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 8.4e-59 232.3 585 31.3
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 7.1e-58 229.2 437 38.7
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 6.6e-56 222.6 409 38.1
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 2.1e-54 217.6 752 28.6
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 7.6e-52 209.1 405 37.3
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 6.4e-51 206.1 447 35.1
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 5.4e-50 203.0 461 36.2
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 1.3e-48 198.4 335 39.7
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.4e-45 188.3 479 29.9
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 1.5e-39 168.3 246 43.1
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 1.5e-36 158.3 276 35.5
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 2.4e-29 134.4 567 26.3
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 1.5e-28 131.7 250 35.2
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.4e-26 125.2 136 54.4
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 9.4e-26 122.5 174 42.5
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.0e-24 119.0 112 54.5
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.7e-22 110.5 232 33.2
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 6.3e-22 109.8 135 48.1
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.1e-21 107.5 297 28.6
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 5.3e-21 106.7 330 31.8
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 6.9e-21 106.3 537 25.3
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 5.5e-18 96.7 575 22.1
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 3.6e-17 94.0 85 52.9
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 3.6e-17 94.0 119 44.5
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 6.1e-17 93.2 134 44.0
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 1.8e-16 91.7 103 47.6
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 8.8e-16 89.4 107 45.8
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 1.5e-15 88.6 250 29.6
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 9.7e-15 85.9 49 79.6
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 6.3e-14 83.2 107 41.1
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.8e-13 81.6 270 30.0
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 9.1e-13 79.3 92 41.3
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 1.3e-11 75.5 84 45.2
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.2e-09 68.9 236 28.4
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 1.7e-06 58.5 50 48.0


User provided reference genes

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