Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g15040 Coffea canephora HOM05D003843 ORTHO05D004646 1.1e-43 179.5 85 100.0
Cc00_g24230 Coffea canephora HOM05D003843 ORTHO05D004646 7.7e-13 77.0 57 75.4
Rhsim13G0201300 Rhododendron simsii HOM05D003843 ORTHO05D004646 1.0e-09 66.6 57 68.4
vmacro04105 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 1.4e-09 66.2 57 68.4
THA.LOC104800481 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 2.3e-09 65.5 57 64.9
Peaxi162Scf00791g00019 Petunia axillaris HOM05D003843 ORTHO05D004646 3.0e-09 65.1 57 64.9
Cpa.g.sc84.81 Carica papaya HOM05D003843 ORTHO05D004646 3.9e-09 64.7 57 64.9
MD03G1163800 Malus domestica HOM05D003843 ORTHO05D004646 3.9e-09 64.7 54 66.7
Nitab4.5_0000718g0260 Nicotiana tabacum HOM05D003843 ORTHO05D004646 3.9e-09 64.7 57 64.9
Duzib168G0367 Durio zibethinus HOM05D003843 ORTHO05D004646 5.1e-09 64.3 54 66.7
MD00G1108200 Malus domestica HOM05D003843 ORTHO05D004646 5.1e-09 64.3 54 66.7
MD11G1176300 Malus domestica HOM05D003843 ORTHO05D004646 5.1e-09 64.3 54 66.7
HPP92_012450 Vanilla planifolia HOM05D003843 ORTHO05D004646 5.1e-09 64.3 54 66.7
CSS0016417 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 6.7e-09 63.9 57 64.9
CSS0043612 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 6.7e-09 63.9 57 64.9
CAN.G96.3 Capsicum annuum HOM05D003843 ORTHO05D004646 6.7e-09 63.9 57 66.7
Nn7g37169 Nelumbo nucifera HOM05D003843 ORTHO05D004646 6.7e-09 63.9 54 66.7
Nitab4.5_0008505g0020 Nicotiana tabacum HOM05D003843 ORTHO05D004646 6.7e-09 63.9 57 64.9
TAR623G0430 Trochodendron aralioides HOM05D003843 ORTHO05D004646 6.7e-09 63.9 54 66.7
Actinidia07000 Actinidia chinensis HOM05D003843 ORTHO05D004646 8.8e-09 63.5 57 64.9
MSTRG.21332 Avicennia marina HOM05D003843 ORTHO05D004646 8.8e-09 63.5 57 63.2
Peaxi162Scf00032g02619 Petunia axillaris HOM05D003843 ORTHO05D004646 8.8e-09 63.5 57 63.2
Prupe.6G156800 Prunus persica HOM05D003843 ORTHO05D004646 8.8e-09 63.5 54 66.7
PGR102G1130 Punica granatum HOM05D003843 ORTHO05D004646 8.8e-09 63.5 54 66.7
RcHm_v2.0_Chr5g0050051 Rosa chinensis HOM05D003843 ORTHO05D004646 8.8e-09 63.5 54 66.7
Solyc11g062430.2 Solanum lycopersicum HOM05D003843 ORTHO05D004646 8.8e-09 63.5 57 64.9
Sopen11g024640 Solanum pennellii HOM05D003843 ORTHO05D004646 8.8e-09 63.5 57 64.9
SGA_v2.0_scaffold26G11383 Striga asiatica HOM05D003843 ORTHO05D004646 8.8e-09 63.5 57 63.2
THA.LOC104826467 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 8.8e-09 63.5 57 63.2
Manes.01G175000 Manihot esculenta HOM05D003843 ORTHO05D004646 1.1e-08 63.2 54 66.7
Atru.chr3.2831 Acer truncatum HOM05D003843 ORTHO05D004646 1.5e-08 62.8 54 64.8
CANSAT64G0238 Cannabis sativa HOM05D003843 ORTHO05D004646 1.5e-08 62.8 54 66.7
COL.COLO4_24925 Corchorus olitorius HOM05D003843 ORTHO05D004646 1.5e-08 62.8 54 64.8
Eucgr.B03772 Eucalyptus grandis HOM05D003843 ORTHO05D004646 1.5e-08 62.8 54 66.7
Thecc.09G256000 Theobroma cacao HOM05D003843 ORTHO05D004646 1.5e-08 62.8 54 64.8
TWI75G1397 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 1.5e-08 62.8 54 64.8
TWI79G0192 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 1.5e-08 62.8 54 64.8
GSVIVG01025835001 Vitis vinifera HOM05D003843 ORTHO05D004646 1.5e-08 62.8 54 64.8
ATR1096G029 Amborella trichopoda HOM05D003843 ORTHO05D004646 1.9e-08 62.4 54 64.8
Potri.001G222700 Populus trichocarpa HOM05D003843 ORTHO05D004646 1.9e-08 62.4 54 64.8
Aqoxy2G00042 Aquilegia oxysepala HOM05D003843 ORTHO05D004646 2.5e-08 62.0 54 64.8
arahy.Tifrunner.gnm1.ann1.286ZLS Arachis hypogaea HOM05D003843 ORTHO05D004646 2.5e-08 62.0 55 63.6
arahy.Tifrunner.gnm1.ann1.66YQP5 Arachis hypogaea HOM05D003843 ORTHO05D004646 2.5e-08 62.0 55 63.6
Lj2C938G6 Lonicera japonica HOM05D003843 ORTHO05D004646 2.5e-08 62.0 54 63.0
MBI13_g30274_MAGBIO Magnolia biondii HOM05D003843 ORTHO05D004646 2.5e-08 62.0 54 64.8
PGSC0003DMG400032509 Solanum tuberosum HOM05D003843 ORTHO05D004646 2.5e-08 62.0 57 64.9
CiPaw.09G163100 Carya illinoinensis HOM05D003843 ORTHO05D004646 3.3e-08 61.6 57 63.2
CDE04G0576 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 3.3e-08 61.6 54 64.8
CDE07G0877 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 3.3e-08 61.6 54 64.8
ClCG02G024160 Citrullus lanatus HOM05D003843 ORTHO05D004646 3.3e-08 61.6 54 63.0
MELO3C014699.2 Cucumis melo HOM05D003843 ORTHO05D004646 3.3e-08 61.6 54 63.0
CsaV3_4G023170 Cucumis sativus L. HOM05D003843 ORTHO05D004646 3.3e-08 61.6 54 63.0
CsaV3_UNG234370 Cucumis sativus L. HOM05D003843 ORTHO05D004646 3.3e-08 61.6 54 63.0
Dinv12305 Davidia involucrata HOM05D003843 ORTHO05D004646 3.3e-08 61.6 54 64.8
Ciclev10015276m.g Citrus clementina HOM05D003843 ORTHO05D004646 4.3e-08 61.2 54 63.0
Glyma.05G079400 Glycine max HOM05D003843 ORTHO05D004646 4.3e-08 61.2 57 61.4
Sabra09G0011400 Salix brachista HOM05D003843 ORTHO05D004646 4.3e-08 61.2 54 63.0
Migut.N02389 Erythranthe guttata HOM05D003843 ORTHO05D004646 5.7e-08 60.8 54 63.0
Gohir.A07G118200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 5.7e-08 60.8 54 63.0
Gohir.D07G122600 Gossypium hirsutum HOM05D003843 ORTHO05D004646 5.7e-08 60.8 54 63.0
Gorai.001G132400 Gossypium raimondii HOM05D003843 ORTHO05D004646 5.7e-08 60.8 54 63.0
Oeu027218.1 Olea europaea HOM05D003843 ORTHO05D004646 5.7e-08 60.8 54 64.8
Manes.02G133500 Manihot esculenta HOM05D003843 ORTHO05D004646 7.4e-08 60.5 54 63.0
Potri.009G020900 Populus trichocarpa HOM05D003843 ORTHO05D004646 7.4e-08 60.5 54 63.0
vmacro14282 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 7.4e-08 60.5 57 61.4
Gohir.A09G107400 Gossypium hirsutum HOM05D003843 ORTHO05D004646 9.7e-08 60.1 54 63.0
Gohir.D09G104200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 9.7e-08 60.1 54 63.0
Gorai.006G121500 Gossypium raimondii HOM05D003843 ORTHO05D004646 9.7e-08 60.1 54 63.0
RcHm_v2.0_Chr4g0435421 Rosa chinensis HOM05D003843 ORTHO05D004646 9.7e-08 60.1 54 61.1
CAN.G128.106 Capsicum annuum HOM05D003843 ORTHO05D004646 1.3e-07 59.7 54 61.1
CAN.G1332.3 Capsicum annuum HOM05D003843 ORTHO05D004646 1.3e-07 59.7 57 61.4
FvH4_4g27570 Fragaria vesca HOM05D003843 ORTHO05D004646 1.3e-07 59.7 54 61.1
FAN07G2602 Fragaria x ananassa HOM05D003843 ORTHO05D004646 1.3e-07 59.7 54 61.1
FAN12G3698 Fragaria x ananassa HOM05D003843 ORTHO05D004646 1.3e-07 59.7 54 61.1
FAN22G0723 Fragaria x ananassa HOM05D003843 ORTHO05D004646 1.3e-07 59.7 54 61.1
Phvul.001G102200 Phaseolus vulgaris HOM05D003843 ORTHO05D004646 1.3e-07 59.7 54 63.0
Sabra16G0132300 Salix brachista HOM05D003843 ORTHO05D004646 1.3e-07 59.7 54 63.0
DCAR_020626 Daucus carota HOM05D003843 ORTHO05D004646 1.7e-07 59.3 54 61.1
Glyma.03G004400 Glycine max HOM05D003843 ORTHO05D004646 1.7e-07 59.3 54 61.1
Glyma.19G121500 Glycine max HOM05D003843 ORTHO05D004646 1.7e-07 59.3 54 61.1
Lsat_1_v5_gn_8_85240 Lactuca sativa HOM05D003843 ORTHO05D004646 1.7e-07 59.3 54 61.1
Lj1g0018589 Lotus japonicus HOM05D003843 ORTHO05D004646 1.7e-07 59.3 54 61.1
SEGI_33472 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 1.7e-07 59.3 54 57.4
VMungo1383G3260 Vigna mungo HOM05D003843 ORTHO05D004646 1.7e-07 59.3 54 61.1
HanXRQChr04g0125421 Helianthus annuus HOM05D003843 ORTHO05D004646 2.2e-07 58.9 54 61.1
Psat3g083920 Pisum sativum HOM05D003843 ORTHO05D004646 2.2e-07 58.9 54 61.1
QL07p015316 Quercus lobata HOM05D003843 ORTHO05D004646 2.2e-07 58.9 56 60.7
Sed0007264 Sechium edule HOM05D003843 ORTHO05D004646 2.2e-07 58.9 54 61.1
Ca_03426_v3 Cicer arietinum L. HOM05D003843 ORTHO05D004646 2.8e-07 58.5 54 61.1
DCAR_013515 Daucus carota HOM05D003843 ORTHO05D004646 2.8e-07 58.5 54 61.1
Medtr7g087530 Medicago truncatula HOM05D003843 ORTHO05D004646 2.8e-07 58.5 54 61.1
TPR.G23658 Trifolium pratense HOM05D003843 ORTHO05D004646 2.8e-07 58.5 54 61.1
Haze_20342 Corylus avellana HOM05D003843 ORTHO05D004646 3.7e-07 58.2 57 61.4
HanXRQChr06g0178281 Helianthus annuus HOM05D003843 ORTHO05D004646 3.7e-07 58.2 54 61.1
Hund19273 Selenicereus undatus HOM05D003843 ORTHO05D004646 3.7e-07 58.2 54 59.3
EL10Ac7g16998 Beta vulgaris HOM05D003843 ORTHO05D004646 4.8e-07 57.8 54 61.1
AUR62033585 Chenopodium quinoa HOM05D003843 ORTHO05D004646 4.8e-07 57.8 54 59.3
Os01g0279200 Oryza sativa ssp. japonica HOM05D003843 ORTHO05D004646 4.8e-07 57.8 54 57.4
MBI19_g17996_MAGBIO Magnolia biondii HOM05D003843 ORTHO05D004646 6.3e-07 57.4 54 59.3
Solyc10g081150.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 6.3e-07 57.4 54 59.3
Sopen10g031650 Solanum pennellii HOM05D003843 ORTHO05D004646 6.3e-07 57.4 54 59.3
AUR62041414 Chenopodium quinoa HOM05D003843 ORTHO05D004646 8.2e-07 57.0 54 59.3
ECA236G0656 Erigeron canadensis HOM05D003843 ORTHO05D004646 8.2e-07 57.0 54 61.1
PSO339G6626 Papaver somniferum HOM05D003843 ORTHO05D004646 8.2e-07 57.0 58 62.1
PSO384G3915 Papaver somniferum HOM05D003843 ORTHO05D004646 8.2e-07 57.0 58 62.1
SMO117G0130 Selaginella moellendorffii HOM05D003843 ORTHO05D004646 8.2e-07 57.0 54 59.3
Lalb_Chr24g0400701 Lupinus albus HOM05D003843 ORTHO05D004646 1.1e-06 56.6 54 57.4
Solyc01g008840.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 1.1e-06 56.6 57 59.6
PGSC0003DMG400028109 Solanum tuberosum HOM05D003843 ORTHO05D004646 1.4e-06 56.2 54 57.4
Zm00001eb128990 Zea mays HOM05D003843 ORTHO05D004646 1.8e-06 55.8 54 55.6
Zm00001eb332660 Zea mays HOM05D003843 ORTHO05D004646 1.8e-06 55.8 54 55.6
Pp3c15_2200 Physcomitrium patens HOM05D003843 ORTHO05D004646 2.4e-06 55.5 57 56.1
Pp3c9_2060 Physcomitrium patens HOM05D003843 ORTHO05D004646 2.4e-06 55.5 54 57.4
QL07p015334 Quercus lobata HOM05D003843 ORTHO05D004646 2.4e-06 55.5 54 59.3
Sopen01g004350 Solanum pennellii HOM05D003843 ORTHO05D004646 2.4e-06 55.5 57 57.9
arahy.Tifrunner.gnm1.ann1.CI8U65 Arachis hypogaea HOM05D003843 ORTHO05D004646 3.1e-06 55.1 55 58.2
Mapoly0063s0071 Marchantia polymorpha HOM05D003843 ORTHO05D004646 3.1e-06 55.1 54 57.4
arahy.Tifrunner.gnm1.ann1.802V4W Arachis hypogaea HOM05D003843 ORTHO05D004646 4.1e-06 54.7 55 56.4
SEGI_37910 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 4.1e-06 54.7 54 57.4
CBR_g24102 Chara braunii HOM05D003843 ORTHO05D004646 6.9e-06 53.9 43 65.1
Sc20g0005970 Simmondsia chinensis HOM05D003843 ORTHO05D004646 6.9e-06 53.9 54 55.6
PGSC0003DMG400022712 Solanum tuberosum HOM05D003843 ORTHO05D004646 6.9e-06 53.9 54 59.3
AagrBONN_evm.TU.Sc2ySwM_344.3619 Anthoceros agrestis HOM05D003843 ORTHO05D004646 9.1e-06 53.5 54 55.6


User provided reference genes

Program Settings