Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g15010 Coffea canephora HOM05D003247 ORTHO05D019032 1.0e-70 270.0 139 100.0
Cc00_g15000 Coffea canephora HOM05D003247 ORTHO05D019032 9.8e-34 147.1 91 81.3
Cc02_g32980 Coffea canephora HOM05D003247 ORTHO05D019032 1.3e-30 136.7 101 71.3
BcaC02g10366 Brassica carinata HOM05D003247 ORTHO05D003974 3.5e-23 112.1 79 73.4
BolC4t24494H Brassica oleracea HOM05D003247 ORTHO05D003974 3.5e-23 112.1 79 73.4
Lj4g0006056 Lotus japonicus HOM05D003247 ORTHO05D003974 4.6e-23 111.7 78 73.1
BraA06t23665Z Brassica rapa HOM05D003247 ORTHO05D003974 7.8e-23 110.9 79 72.2
BraA06t25281Z Brassica rapa HOM05D003247 ORTHO05D003974 7.8e-23 110.9 79 72.2
Thhalv10023233m.g Eutrema salsugineum HOM05D003247 ORTHO05D003974 7.8e-23 110.9 75 76.0
Sp2g00910 Schrenkiella parvula HOM05D003247 ORTHO05D003974 7.8e-23 110.9 75 76.0
C06p02710 Brassica napus HOM05D003247 ORTHO05D003974 1.3e-22 110.2 87 67.8
Nitab4.5_0001615g0030 Nicotiana tabacum HOM05D003247 ORTHO05D003974 3.0e-22 109.0 73 75.3
A06p04610 Brassica napus HOM05D003247 ORTHO05D003974 3.9e-22 108.6 75 73.3
Gohir.A03G018800 Gossypium hirsutum HOM05D003247 ORTHO05D003974 5.1e-22 108.2 75 74.7
Gorai.003G157400 Gossypium raimondii HOM05D003247 ORTHO05D003974 5.1e-22 108.2 75 74.7
A06p21950 Brassica napus HOM05D003247 ORTHO05D003974 6.6e-22 107.8 74 74.3
BolC6t35397H Brassica oleracea HOM05D003247 ORTHO05D003974 6.6e-22 107.8 87 66.7
Ah.12g051740 Amaranthus hybridus HOM05D003247 ORTHO05D003974 1.1e-21 107.1 74 74.3
CiPaw.11G133300 Carya illinoinensis HOM05D003247 ORTHO05D003974 1.1e-21 107.1 73 75.3
Glyma.05G209200 Glycine max HOM05D003247 ORTHO05D003974 1.1e-21 107.1 74 74.3
Glyma.08G015900 Glycine max HOM05D003247 ORTHO05D003974 1.1e-21 107.1 74 74.3
arahy.Tifrunner.gnm1.ann1.1Z7M3S Arachis hypogaea HOM05D003247 ORTHO05D003974 1.5e-21 106.7 80 70.0
MSTRG.1858 Avicennia marina HOM05D003247 ORTHO05D003974 1.9e-21 106.3 75 72.0
EL10Ac5g12795 Beta vulgaris HOM05D003247 ORTHO05D003974 1.9e-21 106.3 74 74.3
Gohir.D03G150100 Gossypium hirsutum HOM05D003247 ORTHO05D003974 1.9e-21 106.3 104 58.7
PGSC0003DMG400012199 Solanum tuberosum HOM05D003247 ORTHO05D003974 1.9e-21 106.3 73 74.0
Haze_08801 Corylus avellana HOM05D003247 ORTHO05D003974 2.5e-21 105.9 88 67.0
DCAR_008372 Daucus carota HOM05D003247 ORTHO05D003974 2.5e-21 105.9 73 74.0
vmacro11386 Vaccinium macrocarpon HOM05D003247 ORTHO05D003974 2.5e-21 105.9 105 58.1
GSVIVG01019730001 Vitis vinifera HOM05D003247 ORTHO05D003974 2.5e-21 105.9 75 72.0
Phvul.002G290908 Phaseolus vulgaris HOM05D003247 ORTHO05D003974 3.3e-21 105.5 72 75.0
AL2G11370 Arabidopsis lyrata HOM05D003247 ORTHO05D003974 4.3e-21 105.1 71 76.1
AT1G63770 Arabidopsis thaliana HOM05D003247 ORTHO05D003974 4.3e-21 105.1 71 76.1
Carub.0002s0107 Capsella rubella HOM05D003247 ORTHO05D003974 4.3e-21 105.1 71 76.1
CAN.G774.62 Capsicum annuum HOM05D003247 ORTHO05D003974 4.3e-21 105.1 75 70.7
Sed0003481 Sechium edule HOM05D003247 ORTHO05D003974 4.3e-21 105.1 73 72.6
FAN04G2168 Fragaria x ananassa HOM05D003247 ORTHO05D003974 7.3e-21 104.4 72 73.6
FAN13G0605 Fragaria x ananassa HOM05D003247 ORTHO05D003974 7.3e-21 104.4 72 73.6
FAN18G0212 Fragaria x ananassa HOM05D003247 ORTHO05D003974 7.3e-21 104.4 72 73.6
Sc01g0005530 Simmondsia chinensis HOM05D003247 ORTHO05D003974 7.3e-21 104.4 73 72.6
ClCG01G002580 Citrullus lanatus HOM05D003247 ORTHO05D003974 9.6e-21 104.0 73 72.6
CsaV3_5G002680 Cucumis sativus L. HOM05D003247 ORTHO05D003974 9.6e-21 104.0 73 72.6
Os08g0562700 Oryza sativa ssp. japonica HOM05D003247 ORTHO05D003974 9.6e-21 104.0 83 66.3
THA.LOC104809378 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 1.2e-20 103.6 71 74.6
Duzib205G1189 Durio zibethinus HOM05D003247 ORTHO05D003974 1.6e-20 103.2 71 74.6
Hund14825 Selenicereus undatus HOM05D003247 ORTHO05D003974 1.6e-20 103.2 71 74.6
CANSAT35G0036 Cannabis sativa HOM05D003247 ORTHO05D003974 2.1e-20 102.8 71 73.2
Nn6g33377 Nelumbo nucifera HOM05D003247 ORTHO05D003974 2.1e-20 102.8 71 74.6
Prupe.5G103100 Prunus persica HOM05D003247 ORTHO05D003974 2.8e-20 102.4 73 71.2
Thecc.03G281500 Theobroma cacao HOM05D003247 ORTHO05D003974 2.8e-20 102.4 71 74.6
ATR0680G039 Amborella trichopoda HOM05D003247 ORTHO05D003974 3.6e-20 102.1 71 73.2
Nn1g01570 Nelumbo nucifera HOM05D003247 ORTHO05D003974 3.6e-20 102.1 71 73.2
Sabra01G0077200 Salix brachista HOM05D003247 ORTHO05D003974 3.6e-20 102.1 72 72.2
FvH4_5g02730 Fragaria vesca HOM05D003247 ORTHO05D003974 4.7e-20 101.7 71 73.2
HanXRQChr03g0086871 Helianthus annuus HOM05D003247 ORTHO05D003974 4.7e-20 101.7 71 73.2
Manes.02G020950 Manihot esculenta HOM05D003247 ORTHO05D003974 4.7e-20 101.7 71 73.2
RcHm_v2.0_Chr7g0197201 Rosa chinensis HOM05D003247 ORTHO05D003974 4.7e-20 101.7 71 73.2
Solyc08g081250.4 Solanum lycopersicum HOM05D003247 ORTHO05D003974 4.7e-20 101.7 71 73.2
Sopen08g029560 Solanum pennellii HOM05D003247 ORTHO05D003974 4.7e-20 101.7 71 73.2
Zm00001eb038870 Zea mays HOM05D003247 ORTHO05D003974 4.7e-20 101.7 71 71.8
CDE05G0892 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 6.2e-20 101.3 71 73.2
Duzib084G1173 Durio zibethinus HOM05D003247 ORTHO05D003974 6.2e-20 101.3 71 73.2
PGR031G0275 Punica granatum HOM05D003247 ORTHO05D003974 6.2e-20 101.3 71 73.2
Sc01g0009690 Simmondsia chinensis HOM05D003247 ORTHO05D003974 6.2e-20 101.3 71 73.2
Ca_17516_v3 Cicer arietinum L. HOM05D003247 ORTHO05D003974 8.1e-20 100.9 71 71.8
Psat7g031800 Pisum sativum HOM05D003247 ORTHO05D003974 8.1e-20 100.9 71 73.2
HanXRQChr13g0416311 Helianthus annuus HOM05D003247 ORTHO05D003974 1.1e-19 100.5 71 73.2
Potri.001G102051 Populus trichocarpa HOM05D003247 ORTHO05D003974 1.1e-19 100.5 71 73.2
Potri.003G129500 Populus trichocarpa HOM05D003247 ORTHO05D003974 1.1e-19 100.5 71 73.2
VMungo0251G1424 Vigna mungo HOM05D003247 ORTHO05D003974 1.1e-19 100.5 71 73.2
Lsat_1_v5_gn_6_86420 Lactuca sativa HOM05D003247 ORTHO05D003974 1.4e-19 100.1 71 71.8
Oeu042332.3 Olea europaea HOM05D003247 ORTHO05D003974 1.4e-19 100.1 86 64.0
Sabra01G0077100 Salix brachista HOM05D003247 ORTHO05D003974 2.4e-19 99.4 71 71.8
Cc02_g32990 Coffea canephora HOM05D003247 ORTHO05D019032 3.1e-19 99.0 79 65.8
ECA240G1820 Erigeron canadensis HOM05D003247 ORTHO05D003974 3.1e-19 99.0 71 71.8
MD14G1107600 Malus domestica HOM05D003247 ORTHO05D003974 3.1e-19 99.0 71 71.8
Mapoly0042s0035 Marchantia polymorpha HOM05D003247 ORTHO05D003974 3.1e-19 99.0 71 70.4
Medtr8g098525 Medicago truncatula HOM05D003247 ORTHO05D003974 3.1e-19 99.0 71 70.4
Pp3c15_1150 Physcomitrium patens HOM05D003247 ORTHO05D003974 5.2e-19 98.2 71 70.4
PSO063G5587 Papaver somniferum HOM05D003247 ORTHO05D003974 6.8e-19 97.8 71 70.4
PSO832G0897 Papaver somniferum HOM05D003247 ORTHO05D003974 6.8e-19 97.8 71 70.4
Potri.001G101975 Populus trichocarpa HOM05D003247 ORTHO05D003974 6.8e-19 97.8 71 70.4
TWI60G0271 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 6.8e-19 97.8 71 70.4
Actinidia14574 Actinidia chinensis HOM05D003247 ORTHO05D003974 1.2e-18 97.1 71 70.4
QL12p032548 Quercus lobata HOM05D003247 ORTHO05D003974 1.2e-18 97.1 91 62.6
Aqoxy5G04015 Aquilegia oxysepala HOM05D003247 ORTHO05D003974 1.5e-18 96.7 71 70.4
TPR.G28250 Trifolium pratense HOM05D003247 ORTHO05D003974 1.5e-18 96.7 73 67.1
Sed0014492 Sechium edule HOM05D003247 ORTHO05D003974 2.0e-18 96.3 73 68.5
AagrBONN_evm.TU.Sc2ySwM_228.2960 Anthoceros agrestis HOM05D003247 ORTHO05D003974 3.4e-18 95.5 71 69.0
PSO210G5648 Papaver somniferum HOM05D003247 ORTHO05D003974 3.4e-18 95.5 71 69.0
THA.LOC104817937 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 3.4e-18 95.5 71 69.0
Cc08_g14920 Coffea canephora HOM05D003247 ORTHO05D003974 5.8e-18 94.7 66 75.8
C04p29680 Brassica napus HOM05D003247 ORTHO05D003974 9.9e-18 94.0 80 65.0
HanXRQChr03g0086881 Helianthus annuus HOM05D003247 ORTHO05D003974 9.9e-18 94.0 71 69.0
Cc02_g32970 Coffea canephora HOM05D003247 ORTHO05D019032 1.3e-17 93.6 63 77.8
Pp3c26_1330 Physcomitrium patens HOM05D003247 ORTHO05D003974 1.3e-17 93.6 71 69.0
BcaB07g31551 Brassica carinata HOM05D003247 ORTHO05D003974 1.7e-17 93.2 66 74.2
Lj8A219G33 Lonicera japonica HOM05D003247 ORTHO05D003974 1.7e-17 93.2 66 74.2
Aa31LG2G950 Aethionema arabicum HOM05D003247 ORTHO05D003974 2.2e-17 92.8 65 75.4
Cc00_g29250 Coffea canephora HOM05D000343 ORTHO05D000975 2.9e-17 92.4 62 79.0
Nitab4.5_0002975g0050 Nicotiana tabacum HOM05D003247 ORTHO05D003974 3.8e-17 92.0 65 73.8
Pp3c9_1240 Physcomitrium patens HOM05D003247 ORTHO05D003974 3.8e-17 92.0 71 69.0
Dinv38927 Davidia involucrata HOM05D003247 ORTHO05D003974 4.9e-17 91.7 77 66.2
Eucgr.D01833 Eucalyptus grandis HOM05D003247 ORTHO05D003974 4.9e-17 91.7 65 73.8
Cc00_g22840 Coffea canephora HOM05D003247 ORTHO05D019032 8.4e-17 90.9 63 76.2
Migut.A00742 Erythranthe guttata HOM05D003247 ORTHO05D003974 8.4e-17 90.9 65 73.8
Oeu011040.2 Olea europaea HOM05D003247 ORTHO05D003974 8.4e-17 90.9 65 73.8
unitig_61.g26270 Utricularia gibba HOM05D003247 ORTHO05D003974 8.4e-17 90.9 65 73.8
Ah.02g110410 Amaranthus hybridus HOM05D003247 ORTHO05D003974 1.1e-16 90.5 65 73.8
BcaC08g43016 Brassica carinata HOM05D003247 ORTHO05D003974 1.1e-16 90.5 65 73.8
CSS0019820 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 1.4e-16 90.1 65 73.8
CSS0047123 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 1.4e-16 90.1 65 73.8
Ciclev10018808m.g Citrus clementina HOM05D003247 ORTHO05D003974 1.4e-16 90.1 65 73.8
Dinv37625 Davidia involucrata HOM05D003247 ORTHO05D003974 1.4e-16 90.1 65 73.8
PSO210G5645 Papaver somniferum HOM05D003247 ORTHO05D003974 1.4e-16 90.1 71 66.2
Rhsim02G0233100 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.4e-16 90.1 65 73.8
RhsimUnG0160000 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.4e-16 90.1 65 73.8
TWI81G0748 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 1.4e-16 90.1 71 67.6
arahy.Tifrunner.gnm1.ann1.5U7DNF Arachis hypogaea HOM05D003247 ORTHO05D003974 1.9e-16 89.7 65 72.3
DCAR_008371 Daucus carota HOM05D003247 ORTHO05D003974 2.4e-16 89.4 66 71.2
FAN08G0767 Fragaria x ananassa HOM05D003247 ORTHO05D003974 2.4e-16 89.4 65 72.3
SMO119G0190 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 2.4e-16 89.4 71 66.2
SMO119G0209 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 2.4e-16 89.4 71 66.2
SMO351G0363 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 2.4e-16 89.4 71 66.2
HPP92_025967 Vanilla planifolia HOM05D003247 ORTHO05D003974 2.4e-16 89.4 66 71.2
Atru.chr9.2165 Acer truncatum HOM05D003247 ORTHO05D003974 3.2e-16 89.0 65 72.3
Actinidia01994 Actinidia chinensis HOM05D003247 ORTHO05D003974 3.2e-16 89.0 65 72.3
THA.LOC104815066 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 3.2e-16 89.0 71 64.8
TAR636G0433 Trochodendron aralioides HOM05D003247 ORTHO05D003974 3.2e-16 89.0 65 72.3
AUR62010702 Chenopodium quinoa HOM05D003247 ORTHO05D003974 5.4e-16 88.2 65 72.3
AUR62017183 Chenopodium quinoa HOM05D003247 ORTHO05D003974 5.4e-16 88.2 65 72.3
Peaxi162Scf00119g00138 Petunia axillaris HOM05D003247 ORTHO05D003974 5.4e-16 88.2 65 70.8
SalBow1G0073 Salvia bowleyana HOM05D003247 ORTHO05D003974 5.4e-16 88.2 65 72.3
SalBow1G5596 Salvia bowleyana HOM05D003247 ORTHO05D003974 5.4e-16 88.2 65 72.3
CDE08G0568 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 7.1e-16 87.8 54 75.9
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 7.1e-16 87.8 65 72.3
MCO16G652 Micromonas commoda HOM05D003247 ORTHO05D003974 9.3e-16 87.4 71 62.0
MELO3C005688.2 Cucumis melo HOM05D003247 ORTHO05D003974 1.2e-15 87.0 65 70.8
TPR.G12767 Trifolium pratense HOM05D003247 ORTHO05D003974 1.2e-15 87.0 65 70.8
MBI17_g42619_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 1.6e-15 86.7 65 72.3
Gohir.D08G202250 Gossypium hirsutum HOM05D003247 ORTHO05D003974 2.1e-15 86.3 75 64.0
Migut.E01080 Erythranthe guttata HOM05D003247 ORTHO05D003974 7.8e-15 84.3 65 67.7
EL10Ac9g20777 Beta vulgaris HOM05D003247 ORTHO05D003974 1.7e-14 83.2 66 66.7
PRCOL_00005594 Prasinoderma coloniale HOM05D003247 ORTHO05D003974 1.7e-14 83.2 71 57.7
MD06G1086400 Malus domestica HOM05D003247 ORTHO05D003974 5.1e-14 81.6 100 53.0
CBR_g30015 Chara braunii HOM05D003247 ORTHO05D003974 1.5e-13 80.1 71 59.2
MCO13G113 Micromonas commoda HOM05D003247 ORTHO05D003974 1.5e-13 80.1 71 60.6
Lsat_1_v5_gn_6_86400 Lactuca sativa HOM05D003247 ORTHO05D003974 1.9e-13 79.7 66 65.2
CBR_g951 Chara braunii HOM05D003247 ORTHO05D003974 3.3e-13 79.0 71 59.2
Lalb_Chr16g0390091 Lupinus albus HOM05D003247 ORTHO05D003974 7.3e-13 77.8 104 49.0
Cre17.g736650 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 1.3e-12 77.0 71 56.3
Lalb_Chr09g0332981 Lupinus albus HOM05D003247 ORTHO05D003974 2.1e-12 76.3 66 62.1
CBR_g30016 Chara braunii HOM05D003247 ORTHO05D003974 3.1e-11 72.4 71 54.9
Lalb_Chr05g0222801 Lupinus albus HOM05D003247 ORTHO05D003974 3.1e-11 72.4 53 67.9
PSO149G0001 Papaver somniferum HOM05D003247 ORTHO05D003974 3.1e-11 72.4 71 54.9
Cc00_g15020 Coffea canephora HOM05D003247 ORTHO05D019032 1.2e-10 70.5 55 65.5
ECA240G2658 Erigeron canadensis HOM05D000167 ORTHO05D000994 9.9e-10 67.4 47 72.3
Cpa.g.sc214.14 Carica papaya HOM05D003247 ORTHO05D003974 1.4e-08 63.5 40 77.5
SGA_v2.0_scaffold173G39167 Striga asiatica HOM05D003247 ORTHO05D003974 1.9e-08 63.2 107 43.0
Lalb_Chr05g0224671 Lupinus albus HOM05D003247 ORTHO05D003974 1.6e-07 60.1 106 35.8
MBI18_g02832_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 4.6e-07 58.5 45 68.9
Gohir.A08G183600 Gossypium hirsutum HOM05D003247 ORTHO05D003974 7.9e-07 57.8 45 71.1
SHI07163 Sapria himalayana HOM05D003247 ORTHO05D003974 1.0e-06 57.4 81 43.2
GSVIVG01013301001 Vitis vinifera HOM05D003247 ORTHO05D019032 1.3e-06 57.0 48 56.2


User provided reference genes

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