Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g15000 Coffea canephora HOM05D003247 ORTHO05D019032 2.2e-90 335.5 159 100.0
Cc02_g32970 Coffea canephora HOM05D003247 ORTHO05D019032 3.0e-42 175.6 184 54.9
Cc00_g22840 Coffea canephora HOM05D003247 ORTHO05D019032 2.8e-40 169.1 130 70.0
Cc00_g15010 Coffea canephora HOM05D003247 ORTHO05D019032 2.3e-34 149.4 91 81.3
Cc02_g32980 Coffea canephora HOM05D003247 ORTHO05D019032 1.9e-33 146.4 93 78.5
Nitab4.5_0001615g0030 Nicotiana tabacum HOM05D003247 ORTHO05D003974 2.3e-26 122.9 77 76.6
BcaC02g10366 Brassica carinata HOM05D003247 ORTHO05D003974 3.0e-26 122.5 77 77.9
BolC4t24494H Brassica oleracea HOM05D003247 ORTHO05D003974 3.0e-26 122.5 77 77.9
BraA06t23665Z Brassica rapa HOM05D003247 ORTHO05D003974 3.0e-26 122.5 77 77.9
BraA06t25281Z Brassica rapa HOM05D003247 ORTHO05D003974 3.0e-26 122.5 77 77.9
Thhalv10023233m.g Eutrema salsugineum HOM05D003247 ORTHO05D003974 3.0e-26 122.5 77 77.9
Sp2g00910 Schrenkiella parvula HOM05D003247 ORTHO05D003974 3.0e-26 122.5 77 77.9
A06p04610 Brassica napus HOM05D003247 ORTHO05D003974 8.6e-26 120.9 77 76.6
CiPaw.11G133300 Carya illinoinensis HOM05D003247 ORTHO05D003974 8.6e-26 120.9 77 76.6
Haze_08801 Corylus avellana HOM05D003247 ORTHO05D003974 8.6e-26 120.9 77 76.6
Ah.12g051740 Amaranthus hybridus HOM05D003247 ORTHO05D003974 1.1e-25 120.6 78 75.6
EL10Ac5g12795 Beta vulgaris HOM05D003247 ORTHO05D003974 2.5e-25 119.4 77 76.6
A06p21950 Brassica napus HOM05D003247 ORTHO05D003974 2.5e-25 119.4 75 77.3
C06p02710 Brassica napus HOM05D003247 ORTHO05D003974 4.3e-25 118.6 78 73.1
Glyma.05G209200 Glycine max HOM05D003247 ORTHO05D003974 4.3e-25 118.6 75 77.3
Glyma.08G015900 Glycine max HOM05D003247 ORTHO05D003974 4.3e-25 118.6 75 77.3
GSVIVG01019730001 Vitis vinifera HOM05D003247 ORTHO05D003974 5.6e-25 118.2 77 75.3
Gohir.A03G018800 Gossypium hirsutum HOM05D003247 ORTHO05D003974 7.3e-25 117.9 74 78.4
Gohir.D03G150100 Gossypium hirsutum HOM05D003247 ORTHO05D003974 7.3e-25 117.9 74 78.4
Gorai.003G157400 Gossypium raimondii HOM05D003247 ORTHO05D003974 7.3e-25 117.9 74 78.4
PGSC0003DMG400012199 Solanum tuberosum HOM05D003247 ORTHO05D003974 7.3e-25 117.9 76 75.0
arahy.Tifrunner.gnm1.ann1.1Z7M3S Arachis hypogaea HOM05D003247 ORTHO05D003974 9.6e-25 117.5 74 77.0
BolC6t35397H Brassica oleracea HOM05D003247 ORTHO05D003974 9.6e-25 117.5 78 73.1
Cc02_g32990 Coffea canephora HOM05D003247 ORTHO05D019032 1.6e-24 116.7 63 85.7
DCAR_008372 Daucus carota HOM05D003247 ORTHO05D003974 1.6e-24 116.7 74 77.0
Lj4g0006056 Lotus japonicus HOM05D003247 ORTHO05D003974 1.6e-24 116.7 74 77.0
MSTRG.1858 Avicennia marina HOM05D003247 ORTHO05D003974 2.1e-24 116.3 74 75.7
FAN04G2168 Fragaria x ananassa HOM05D003247 ORTHO05D003974 2.1e-24 116.3 77 74.0
FAN13G0605 Fragaria x ananassa HOM05D003247 ORTHO05D003974 2.1e-24 116.3 77 74.0
FAN18G0212 Fragaria x ananassa HOM05D003247 ORTHO05D003974 2.1e-24 116.3 77 74.0
Phvul.002G290908 Phaseolus vulgaris HOM05D003247 ORTHO05D003974 2.1e-24 116.3 73 78.1
AL2G11370 Arabidopsis lyrata HOM05D003247 ORTHO05D003974 2.8e-24 115.9 72 79.2
AT1G63770 Arabidopsis thaliana HOM05D003247 ORTHO05D003974 2.8e-24 115.9 72 79.2
Carub.0002s0107 Capsella rubella HOM05D003247 ORTHO05D003974 2.8e-24 115.9 72 79.2
CAN.G774.62 Capsicum annuum HOM05D003247 ORTHO05D003974 2.8e-24 115.9 74 75.7
Sed0003481 Sechium edule HOM05D003247 ORTHO05D003974 2.8e-24 115.9 74 75.7
vmacro11386 Vaccinium macrocarpon HOM05D003247 ORTHO05D003974 2.8e-24 115.9 74 77.0
Prupe.5G103100 Prunus persica HOM05D003247 ORTHO05D003974 3.6e-24 115.5 77 72.7
Sc01g0005530 Simmondsia chinensis HOM05D003247 ORTHO05D003974 4.7e-24 115.2 74 75.7
ClCG01G002580 Citrullus lanatus HOM05D003247 ORTHO05D003974 6.2e-24 114.8 74 75.7
CsaV3_5G002680 Cucumis sativus L. HOM05D003247 ORTHO05D003974 6.2e-24 114.8 74 75.7
Os08g0562700 Oryza sativa ssp. japonica HOM05D003247 ORTHO05D003974 8.1e-24 114.4 74 75.7
THA.LOC104809378 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 8.1e-24 114.4 72 77.8
Duzib205G1189 Durio zibethinus HOM05D003247 ORTHO05D003974 1.1e-23 114.0 72 77.8
Hund14825 Selenicereus undatus HOM05D003247 ORTHO05D003974 1.1e-23 114.0 72 77.8
CANSAT35G0036 Cannabis sativa HOM05D003247 ORTHO05D003974 1.4e-23 113.6 72 76.4
Nn6g33377 Nelumbo nucifera HOM05D003247 ORTHO05D003974 1.4e-23 113.6 72 77.8
Thecc.03G281500 Theobroma cacao HOM05D003247 ORTHO05D003974 1.8e-23 113.2 72 77.8
Zm00001eb038870 Zea mays HOM05D003247 ORTHO05D003974 1.8e-23 113.2 72 77.8
ATR0680G039 Amborella trichopoda HOM05D003247 ORTHO05D003974 2.4e-23 112.8 72 76.4
Nn1g01570 Nelumbo nucifera HOM05D003247 ORTHO05D003974 2.4e-23 112.8 72 76.4
Sabra01G0077200 Salix brachista HOM05D003247 ORTHO05D003974 2.4e-23 112.8 73 75.3
FvH4_5g02730 Fragaria vesca HOM05D003247 ORTHO05D003974 3.1e-23 112.5 72 76.4
HanXRQChr03g0086871 Helianthus annuus HOM05D003247 ORTHO05D003974 3.1e-23 112.5 72 76.4
Manes.02G020950 Manihot esculenta HOM05D003247 ORTHO05D003974 3.1e-23 112.5 72 76.4
RcHm_v2.0_Chr7g0197201 Rosa chinensis HOM05D003247 ORTHO05D003974 3.1e-23 112.5 72 76.4
Solyc08g081250.4 Solanum lycopersicum HOM05D003247 ORTHO05D003974 3.1e-23 112.5 72 76.4
Sopen08g029560 Solanum pennellii HOM05D003247 ORTHO05D003974 3.1e-23 112.5 72 76.4
CDE05G0892 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 4.0e-23 112.1 72 76.4
Duzib084G1173 Durio zibethinus HOM05D003247 ORTHO05D003974 4.0e-23 112.1 72 76.4
PGR031G0275 Punica granatum HOM05D003247 ORTHO05D003974 4.0e-23 112.1 72 76.4
Sc01g0009690 Simmondsia chinensis HOM05D003247 ORTHO05D003974 4.0e-23 112.1 72 76.4
Ca_17516_v3 Cicer arietinum L. HOM05D003247 ORTHO05D003974 5.2e-23 111.7 72 75.0
Oeu042332.3 Olea europaea HOM05D003247 ORTHO05D003974 5.2e-23 111.7 77 72.7
Psat7g031800 Pisum sativum HOM05D003247 ORTHO05D003974 5.2e-23 111.7 72 76.4
HanXRQChr13g0416311 Helianthus annuus HOM05D003247 ORTHO05D003974 6.8e-23 111.3 72 76.4
Potri.001G102051 Populus trichocarpa HOM05D003247 ORTHO05D003974 6.8e-23 111.3 72 76.4
Potri.003G129500 Populus trichocarpa HOM05D003247 ORTHO05D003974 6.8e-23 111.3 72 76.4
VMungo0251G1424 Vigna mungo HOM05D003247 ORTHO05D003974 6.8e-23 111.3 72 76.4
Lsat_1_v5_gn_6_86420 Lactuca sativa HOM05D003247 ORTHO05D003974 8.9e-23 110.9 72 75.0
Sabra01G0077100 Salix brachista HOM05D003247 ORTHO05D003974 1.5e-22 110.2 72 75.0
ECA240G1820 Erigeron canadensis HOM05D003247 ORTHO05D003974 2.0e-22 109.8 72 75.0
MD14G1107600 Malus domestica HOM05D003247 ORTHO05D003974 2.0e-22 109.8 72 75.0
Mapoly0042s0035 Marchantia polymorpha HOM05D003247 ORTHO05D003974 2.0e-22 109.8 72 73.6
Medtr8g098525 Medicago truncatula HOM05D003247 ORTHO05D003974 2.0e-22 109.8 72 73.6
Pp3c15_1150 Physcomitrium patens HOM05D003247 ORTHO05D003974 3.4e-22 109.0 72 73.6
Potri.001G101975 Populus trichocarpa HOM05D003247 ORTHO05D003974 4.4e-22 108.6 72 73.6
TWI60G0271 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 4.4e-22 108.6 72 73.6
Actinidia14574 Actinidia chinensis HOM05D003247 ORTHO05D003974 7.6e-22 107.8 72 73.6
TPR.G28250 Trifolium pratense HOM05D003247 ORTHO05D003974 9.9e-22 107.5 74 70.3
PSO063G5587 Papaver somniferum HOM05D003247 ORTHO05D003974 1.3e-21 107.1 72 72.2
PSO832G0897 Papaver somniferum HOM05D003247 ORTHO05D003974 1.3e-21 107.1 72 72.2
Sed0014492 Sechium edule HOM05D003247 ORTHO05D003974 1.3e-21 107.1 74 71.6
Aqoxy5G04015 Aquilegia oxysepala HOM05D003247 ORTHO05D003974 1.7e-21 106.7 93 60.2
AagrBONN_evm.TU.Sc2ySwM_228.2960 Anthoceros agrestis HOM05D003247 ORTHO05D003974 2.2e-21 106.3 72 72.2
PSO210G5648 Papaver somniferum HOM05D003247 ORTHO05D003974 2.2e-21 106.3 72 72.2
THA.LOC104817937 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 2.2e-21 106.3 72 72.2
HanXRQChr03g0086881 Helianthus annuus HOM05D003247 ORTHO05D003974 6.4e-21 104.8 72 72.2
Pp3c26_1330 Physcomitrium patens HOM05D003247 ORTHO05D003974 8.4e-21 104.4 72 72.2
Cc08_g14920 Coffea canephora HOM05D003247 ORTHO05D003974 1.1e-20 104.0 67 77.6
Pp3c9_1240 Physcomitrium patens HOM05D003247 ORTHO05D003974 2.4e-20 102.8 72 72.2
BcaB07g31551 Brassica carinata HOM05D003247 ORTHO05D003974 3.2e-20 102.4 67 76.1
C04p29680 Brassica napus HOM05D003247 ORTHO05D003974 3.2e-20 102.4 67 76.1
Lj8A219G33 Lonicera japonica HOM05D003247 ORTHO05D003974 3.2e-20 102.4 67 76.1
QL12p032548 Quercus lobata HOM05D003247 ORTHO05D003974 3.2e-20 102.4 71 71.8
Aa31LG2G950 Aethionema arabicum HOM05D003247 ORTHO05D003974 4.2e-20 102.1 66 77.3
Nitab4.5_0002975g0050 Nicotiana tabacum HOM05D003247 ORTHO05D003974 7.1e-20 101.3 66 75.8
TWI81G0748 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 7.1e-20 101.3 72 70.8
Cc00_g29250 Coffea canephora HOM05D000343 ORTHO05D000975 9.3e-20 100.9 93 61.3
Eucgr.D01833 Eucalyptus grandis HOM05D003247 ORTHO05D003974 9.3e-20 100.9 66 75.8
PSO210G5645 Papaver somniferum HOM05D003247 ORTHO05D003974 9.3e-20 100.9 72 69.4
Migut.A00742 Erythranthe guttata HOM05D003247 ORTHO05D003974 1.6e-19 100.1 66 75.8
Oeu011040.2 Olea europaea HOM05D003247 ORTHO05D003974 1.6e-19 100.1 66 75.8
SMO119G0190 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.6e-19 100.1 72 69.4
SMO119G0209 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.6e-19 100.1 72 69.4
SMO351G0363 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.6e-19 100.1 72 69.4
unitig_61.g26270 Utricularia gibba HOM05D003247 ORTHO05D003974 1.6e-19 100.1 66 75.8
Ah.02g110410 Amaranthus hybridus HOM05D003247 ORTHO05D003974 2.1e-19 99.8 66 75.8
BcaC08g43016 Brassica carinata HOM05D003247 ORTHO05D003974 2.1e-19 99.8 66 75.8
Dinv38927 Davidia involucrata HOM05D003247 ORTHO05D003974 2.1e-19 99.8 69 72.5
THA.LOC104815066 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 2.1e-19 99.8 72 68.1
CSS0019820 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 2.7e-19 99.4 66 75.8
CSS0047123 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 2.7e-19 99.4 66 75.8
Ciclev10018808m.g Citrus clementina HOM05D003247 ORTHO05D003974 2.7e-19 99.4 66 75.8
Dinv37625 Davidia involucrata HOM05D003247 ORTHO05D003974 2.7e-19 99.4 66 75.8
Rhsim02G0233100 Rhododendron simsii HOM05D003247 ORTHO05D003974 2.7e-19 99.4 66 75.8
RhsimUnG0160000 Rhododendron simsii HOM05D003247 ORTHO05D003974 2.7e-19 99.4 66 75.8
arahy.Tifrunner.gnm1.ann1.5U7DNF Arachis hypogaea HOM05D003247 ORTHO05D003974 3.5e-19 99.0 66 74.2
DCAR_008371 Daucus carota HOM05D003247 ORTHO05D003974 4.6e-19 98.6 67 73.1
FAN08G0767 Fragaria x ananassa HOM05D003247 ORTHO05D003974 4.6e-19 98.6 66 74.2
HPP92_025967 Vanilla planifolia HOM05D003247 ORTHO05D003974 4.6e-19 98.6 67 73.1
Atru.chr9.2165 Acer truncatum HOM05D003247 ORTHO05D003974 6.0e-19 98.2 66 74.2
Actinidia01994 Actinidia chinensis HOM05D003247 ORTHO05D003974 6.0e-19 98.2 66 74.2
TAR636G0433 Trochodendron aralioides HOM05D003247 ORTHO05D003974 6.0e-19 98.2 66 74.2
MCO16G652 Micromonas commoda HOM05D003247 ORTHO05D003974 7.8e-19 97.8 96 54.2
AUR62010702 Chenopodium quinoa HOM05D003247 ORTHO05D003974 1.0e-18 97.4 84 61.9
AUR62017183 Chenopodium quinoa HOM05D003247 ORTHO05D003974 1.0e-18 97.4 66 74.2
Peaxi162Scf00119g00138 Petunia axillaris HOM05D003247 ORTHO05D003974 1.0e-18 97.4 66 72.7
SalBow1G5596 Salvia bowleyana HOM05D003247 ORTHO05D003974 1.0e-18 97.4 66 74.2
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 1.3e-18 97.1 66 74.2
CDE08G0568 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 2.3e-18 96.3 50 84.0
MELO3C005688.2 Cucumis melo HOM05D003247 ORTHO05D003974 2.3e-18 96.3 66 72.7
SalBow1G0073 Salvia bowleyana HOM05D003247 ORTHO05D003974 2.3e-18 96.3 66 72.7
TPR.G12767 Trifolium pratense HOM05D003247 ORTHO05D003974 2.3e-18 96.3 66 72.7
MBI17_g42619_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 3.0e-18 95.9 66 74.2
PRCOL_00005594 Prasinoderma coloniale HOM05D003247 ORTHO05D003974 1.1e-17 94.0 72 61.1
Migut.E01080 Erythranthe guttata HOM05D003247 ORTHO05D003974 1.5e-17 93.6 66 69.7
Gohir.D08G202250 Gossypium hirsutum HOM05D003247 ORTHO05D003974 1.5e-17 93.6 93 57.0
EL10Ac9g20777 Beta vulgaris HOM05D003247 ORTHO05D003974 3.3e-17 92.4 67 68.7
MD06G1086400 Malus domestica HOM05D003247 ORTHO05D003974 5.6e-17 91.7 67 68.7
CBR_g30015 Chara braunii HOM05D003247 ORTHO05D003974 9.6e-17 90.9 72 62.5
MCO13G113 Micromonas commoda HOM05D003247 ORTHO05D003974 9.6e-17 90.9 72 63.9
Lsat_1_v5_gn_6_86400 Lactuca sativa HOM05D003247 ORTHO05D003974 3.6e-16 89.0 67 67.2
CBR_g951 Chara braunii HOM05D003247 ORTHO05D003974 4.8e-16 88.6 96 50.0
Lalb_Chr16g0390091 Lupinus albus HOM05D003247 ORTHO05D003974 4.8e-16 88.6 67 67.2
Cre17.g736650 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 8.1e-16 87.8 72 59.7
Lalb_Chr09g0332981 Lupinus albus HOM05D003247 ORTHO05D003974 3.1e-15 85.9 67 64.2
CBR_g30016 Chara braunii HOM05D003247 ORTHO05D003974 2.6e-14 82.8 96 46.9
PSO149G0001 Papaver somniferum HOM05D003247 ORTHO05D003974 3.4e-14 82.4 88 50.0
Lalb_Chr05g0222801 Lupinus albus HOM05D003247 ORTHO05D003974 3.8e-13 79.0 44 79.5
Cc00_g15020 Coffea canephora HOM05D003247 ORTHO05D019032 4.9e-13 78.6 54 72.2
ECA240G2658 Erigeron canadensis HOM05D000167 ORTHO05D000994 9.3e-12 74.3 43 79.1
Cpa.g.sc214.14 Carica papaya HOM05D003247 ORTHO05D003974 1.7e-10 70.1 36 86.1
GSVIVG01013301001 Vitis vinifera HOM05D003247 ORTHO05D019032 4.3e-09 65.5 44 63.6
SMO169G0195 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 7.3e-09 64.7 120 33.3
SGA_v2.0_scaffold173G39167 Striga asiatica HOM05D003247 ORTHO05D003974 9.6e-09 64.3 50 70.0
CSS0029032 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 2.8e-08 62.8 72 48.6
MBI18_g02832_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 3.6e-08 62.4 52 65.4
SHI07163 Sapria himalayana HOM05D003247 ORTHO05D003974 3.6e-08 62.4 75 48.0
Gohir.A08G183600 Gossypium hirsutum HOM05D003247 ORTHO05D003974 8.1e-08 61.2 74 52.7
Lalb_Chr05g0224671 Lupinus albus HOM05D003247 ORTHO05D003974 2.0e-06 56.6 78 39.7


User provided reference genes

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