Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g14970 Coffea canephora HOM05D003167 ORTHO05D003929 5.6e-162 574.3 312 100.0
Cc00_g14960 Coffea canephora HOM05D003167 ORTHO05D003929 1.8e-99 366.7 254 79.5
FAN05G3544 Fragaria x ananassa HOM05D003167 ORTHO05D003929 7.5e-90 334.7 263 69.6
FAN05G3981 Fragaria x ananassa HOM05D003167 ORTHO05D003929 7.5e-90 334.7 263 69.6
Lj3C1008T14 Lonicera japonica HOM05D003167 ORTHO05D003929 1.1e-88 330.9 255 71.4
DCAR_020795 Daucus carota HOM05D003167 ORTHO05D003929 2.4e-88 329.7 254 69.3
Gohir.D04G106400 Gossypium hirsutum HOM05D003167 ORTHO05D003929 1.2e-87 327.4 254 68.9
Gorai.009G410400 Gossypium raimondii HOM05D003167 ORTHO05D003929 1.2e-87 327.4 254 68.9
unitig_578.g16659 Utricularia gibba HOM05D003167 ORTHO05D003929 1.2e-87 327.4 262 66.8
CSS0014862 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 3.5e-87 325.9 254 68.9
CSS0043785 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 3.5e-87 325.9 254 68.9
Gohir.A04G067800 Gossypium hirsutum HOM05D003167 ORTHO05D003929 3.5e-87 325.9 254 68.5
MSTRG.21603 Avicennia marina HOM05D003167 ORTHO05D003929 4.5e-87 325.5 254 67.3
Dinv35839 Davidia involucrata HOM05D003167 ORTHO05D003929 4.5e-87 325.5 254 68.5
Thecc.05G076300 Theobroma cacao HOM05D003167 ORTHO05D003929 5.9e-87 325.1 254 68.1
Actinidia26630 Actinidia chinensis HOM05D003167 ORTHO05D003929 1.7e-86 323.6 254 68.5
Duzib093G1992 Durio zibethinus HOM05D003167 ORTHO05D003929 2.2e-86 323.2 254 67.7
Lsat_1_v5_gn_2_23140 Lactuca sativa HOM05D003167 ORTHO05D003929 2.2e-86 323.2 254 68.1
FAN02G2003 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.8e-86 322.4 254 67.7
arahy.Tifrunner.gnm1.ann1.P92TZX Arachis hypogaea HOM05D003167 ORTHO05D003929 8.5e-86 321.2 256 68.0
arahy.Tifrunner.gnm1.ann1.WY8M22 Arachis hypogaea HOM05D003167 ORTHO05D003929 8.5e-86 321.2 256 68.0
FvH4_6g17312 Fragaria vesca HOM05D003167 ORTHO05D003929 8.5e-86 321.2 254 67.3
FAN14G2907 Fragaria x ananassa HOM05D003167 ORTHO05D003929 8.5e-86 321.2 254 67.3
Lj1g0005916 Lotus japonicus HOM05D003167 ORTHO05D003929 1.9e-85 320.1 254 66.9
CiPaw.10G002600 Carya illinoinensis HOM05D003167 ORTHO05D003929 2.5e-85 319.7 254 68.9
Cfa016494 Carpinus fangiana HOM05D003167 ORTHO05D003929 3.2e-85 319.3 254 68.1
Peaxi162Scf00732g00028 Petunia axillaris HOM05D003167 ORTHO05D003929 3.2e-85 319.3 254 67.3
RcHm_v2.0_Chr3g0471451 Rosa chinensis HOM05D003167 ORTHO05D003929 3.2e-85 319.3 254 66.9
TAR623G0013 Trochodendron aralioides HOM05D003167 ORTHO05D003929 3.2e-85 319.3 254 68.1
Migut.G00710 Erythranthe guttata HOM05D003167 ORTHO05D003929 7.2e-85 318.2 254 68.1
Medtr7g102700 Medicago truncatula HOM05D003167 ORTHO05D003929 7.2e-85 318.2 254 66.9
Ca_08942_v3 Cicer arietinum L. HOM05D003167 ORTHO05D003929 9.5e-85 317.8 254 66.5
Manes.08G017200 Manihot esculenta HOM05D003167 ORTHO05D003929 1.6e-84 317.0 254 66.1
GSVIVG01033725001 Vitis vinifera HOM05D003167 ORTHO05D003929 2.8e-84 316.2 254 66.5
ClCG10G019590 Citrullus lanatus HOM05D003167 ORTHO05D003929 3.6e-84 315.8 254 66.5
Phvul.001G184000 Phaseolus vulgaris HOM05D003167 ORTHO05D003929 4.7e-84 315.5 256 66.8
SGA_v2.0_scaffold312G48279 Striga asiatica HOM05D003167 ORTHO05D003929 4.7e-84 315.5 252 67.1
vmacro07353 Vaccinium macrocarpon HOM05D003167 ORTHO05D003929 4.7e-84 315.5 254 66.9
Haze_19497 Corylus avellana HOM05D003167 ORTHO05D003929 8.0e-84 314.7 254 66.9
Atru.chr8.1695 Acer truncatum HOM05D003167 ORTHO05D003929 1.8e-83 313.5 254 66.9
VMungo1383G0302 Vigna mungo HOM05D003167 ORTHO05D003929 1.8e-83 313.5 256 66.0
Sed0027110 Sechium edule HOM05D003167 ORTHO05D003929 2.3e-83 313.2 254 65.7
Lalb_Chr25g0288761 Lupinus albus HOM05D003167 ORTHO05D003929 8.8e-83 311.2 254 66.1
TPR.G31678 Trifolium pratense HOM05D003167 ORTHO05D003929 2.6e-82 309.7 254 65.4
MELO3C009413.2 Cucumis melo HOM05D003167 ORTHO05D003929 4.4e-82 308.9 259 64.9
CsaV3_3G036590 Cucumis sativus L. HOM05D003167 ORTHO05D003929 5.7e-82 308.5 249 66.7
Rhsim03G0085500 Rhododendron simsii HOM05D003167 ORTHO05D003929 7.5e-82 308.1 266 65.4
Ciclev10011207m.g Citrus clementina HOM05D003167 ORTHO05D003929 9.8e-82 307.8 254 66.9
ATR0724G050 Amborella trichopoda HOM05D003167 ORTHO05D003929 1.7e-81 307.0 261 65.5
ECA238G2918 Erigeron canadensis HOM05D003167 ORTHO05D003929 1.7e-81 307.0 253 66.0
Hma1.2p1_0564F.1_g179130 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 4.9e-81 305.4 254 65.7
Aqoxy1G01021 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 6.3e-81 305.1 254 64.2
CANSAT80G1311 Cannabis sativa HOM05D003167 ORTHO05D003929 6.3e-81 305.1 254 64.2
CDE04G1328 Ceratophyllum demersum HOM05D003167 ORTHO05D003929 8.3e-81 304.7 254 64.6
TAR636G1269 Trochodendron aralioides HOM05D003167 ORTHO05D003929 1.4e-80 303.9 254 64.2
COL.COLO4_22264 Corchorus olitorius HOM05D003167 ORTHO05D003929 1.8e-80 303.5 254 64.2
BraA09t42148Z Brassica rapa HOM05D003167 ORTHO05D003929 5.4e-80 302.0 258 64.0
HanXRQChr11g0325191 Helianthus annuus HOM05D003167 ORTHO05D003929 9.2e-80 301.2 254 65.0
Lalb_Chr21g0315291 Lupinus albus HOM05D003167 ORTHO05D003929 1.6e-79 300.4 256 63.7
Medtr1g061860 Medicago truncatula HOM05D003167 ORTHO05D003929 3.5e-79 299.3 256 64.5
THA.LOC104816364 Tarenaya hassleriana HOM05D003167 ORTHO05D003929 3.5e-79 299.3 254 64.6
VMungo0720G2588 Vigna mungo HOM05D003167 ORTHO05D003929 5.9e-79 298.5 256 64.1
Eucgr.K02416 Eucalyptus grandis HOM05D003167 ORTHO05D003929 7.8e-79 298.1 254 64.2
Sabra06G0093300 Salix brachista HOM05D003167 ORTHO05D003929 7.8e-79 298.1 283 59.0
Aqoxy1G01022 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 1.0e-78 297.7 254 64.2
ECA232G4802 Erigeron canadensis HOM05D003167 ORTHO05D003929 1.3e-78 297.4 252 64.7
Ah.15g091330 Amaranthus hybridus HOM05D003167 ORTHO05D003929 2.3e-78 296.6 259 61.8
AagrBONN_evm.TU.Sc2ySwM_344.2239 Anthoceros agrestis HOM05D003167 ORTHO05D003929 2.3e-78 296.6 254 63.0
CARHR003240 Cardamine hirsuta HOM05D003167 ORTHO05D003929 3.8e-78 295.8 255 62.4
Glyma.03G188600 Glycine max HOM05D003167 ORTHO05D003929 3.8e-78 295.8 256 62.9
Glyma.19G188800 Glycine max HOM05D003167 ORTHO05D003929 5.0e-78 295.4 256 63.3
Solyc10g085410.3 Solanum lycopersicum HOM05D003167 ORTHO05D003929 8.6e-78 294.7 254 62.2
Mapoly0001s0156 Marchantia polymorpha HOM05D003167 ORTHO05D003929 1.1e-77 294.3 254 63.0
Potri.006G118700 Populus trichocarpa HOM05D003167 ORTHO05D003929 1.1e-77 294.3 233 67.4
Peaxi162Scf01089g10011 Petunia axillaris HOM05D003167 ORTHO05D003929 2.5e-77 293.1 254 61.0
Sopen10g034860 Solanum pennellii HOM05D003167 ORTHO05D003929 2.5e-77 293.1 253 62.1
Aa31LG1G9100 Aethionema arabicum HOM05D003167 ORTHO05D003929 3.3e-77 292.7 254 62.2
SalBow8G1467 Salvia bowleyana HOM05D003167 ORTHO05D003929 4.3e-77 292.4 256 64.1
SalBow8G3947 Salvia bowleyana HOM05D003167 ORTHO05D003929 4.3e-77 292.4 256 64.1
Zm00001eb061170 Zea mays HOM05D003167 ORTHO05D003929 7.3e-77 291.6 271 60.5
PGSC0003DMG400040194 Solanum tuberosum HOM05D003167 ORTHO05D003929 1.2e-76 290.8 251 62.2
Thhalv10006994m.g Eutrema salsugineum HOM05D003167 ORTHO05D003929 1.6e-76 290.4 250 63.2
EL10Ac7g16722 Beta vulgaris HOM05D003167 ORTHO05D003929 2.1e-76 290.0 254 61.0
C05p02250 Brassica napus HOM05D003167 ORTHO05D003929 2.1e-76 290.0 253 61.7
TPR.G27088 Trifolium pratense HOM05D003167 ORTHO05D003929 2.8e-76 289.7 252 64.3
A10p02430 Brassica napus HOM05D003167 ORTHO05D003929 8.0e-76 288.1 250 62.4
Pp3c27_420 Physcomitrium patens HOM05D003167 ORTHO05D003929 8.0e-76 288.1 251 61.4
AUR62042696 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.0e-75 287.7 252 61.1
PGR142G4079 Punica granatum HOM05D003167 ORTHO05D003929 1.0e-75 287.7 254 61.8
A09p68130 Brassica napus HOM05D003167 ORTHO05D003929 1.4e-75 287.3 250 62.0
C08p52570 Brassica napus HOM05D003167 ORTHO05D003929 1.4e-75 287.3 250 62.4
BolC8t52784H Brassica oleracea HOM05D003167 ORTHO05D003929 1.4e-75 287.3 250 62.4
BolC5t29003H Brassica oleracea HOM05D003167 ORTHO05D003929 1.8e-75 287.0 250 62.0
PSO339G0841 Papaver somniferum HOM05D003167 ORTHO05D003929 1.8e-75 287.0 257 61.1
BcaC05g24486 Brassica carinata HOM05D003167 ORTHO05D003929 2.3e-75 286.6 250 61.6
Sp1g02770 Schrenkiella parvula HOM05D003167 ORTHO05D003929 2.3e-75 286.6 249 62.7
AUR62040188 Chenopodium quinoa HOM05D003167 ORTHO05D003929 3.0e-75 286.2 252 60.7
MD14G1096200 Malus domestica HOM05D003167 ORTHO05D003929 6.8e-75 285.0 254 61.4
HPP92_017793 Vanilla planifolia HOM05D003167 ORTHO05D003929 1.2e-74 284.3 254 61.0
QL07p041296 Quercus lobata HOM05D003167 ORTHO05D003929 4.4e-74 282.3 254 63.0
Os03g0800100 Oryza sativa ssp. japonica HOM05D003167 ORTHO05D003929 4.9e-73 278.9 254 61.0
Psat6g078080 Pisum sativum HOM05D003167 ORTHO05D003929 4.9e-73 278.9 236 65.3
Hund04098 Selenicereus undatus HOM05D003167 ORTHO05D003929 4.9e-73 278.9 254 59.4
Nitab4.5_0002027g0020 Nicotiana tabacum HOM05D003167 ORTHO05D003929 8.3e-73 278.1 254 59.4
AL1G13510 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 1.4e-72 277.3 254 59.4
AT1G03910 Arabidopsis thaliana HOM05D003167 ORTHO05D003929 1.8e-72 276.9 253 59.7
Lj8P306T56 Lonicera japonica HOM05D003167 ORTHO05D003929 2.4e-72 276.6 254 60.2
Prupe.7G122300 Prunus persica HOM05D003167 ORTHO05D003929 5.4e-72 275.4 229 64.2
Carub.0001s0306 Capsella rubella HOM05D003167 ORTHO05D003929 1.6e-71 273.9 253 58.9
Sc01g0003900 Simmondsia chinensis HOM05D003167 ORTHO05D003929 1.6e-71 273.9 255 58.0
Thecc.06G013600 Theobroma cacao HOM05D003167 ORTHO05D003929 1.6e-71 273.9 254 59.8
SHI27742 Sapria himalayana HOM05D003167 ORTHO05D003929 2.3e-70 270.0 260 58.5
Cpa.g.sc5.120 Carica papaya HOM05D003167 ORTHO05D003929 1.5e-69 267.3 254 59.1
PSO210G0575 Papaver somniferum HOM05D003167 ORTHO05D003929 9.5e-69 264.6 254 57.1
CAN.G738.3 Capsicum annuum HOM05D003167 ORTHO05D003929 3.1e-67 259.6 245 58.0
BcaC07g42222 Brassica carinata HOM05D003167 ORTHO05D003929 8.9e-67 258.1 253 57.7
CARHR131270 Cardamine hirsuta HOM05D003167 ORTHO05D003929 6.4e-65 251.9 248 56.0
AL4G33010 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 2.3e-62 243.4 255 54.9
Thecc.08G192100 Theobroma cacao HOM05D003167 ORTHO05D003929 5.0e-62 242.3 255 57.3
Carub.0004s1866 Capsella rubella HOM05D003167 ORTHO05D003929 1.5e-61 240.7 250 53.6
SMO169G0108 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 3.6e-60 236.1 254 52.0
Oeu005667.1 Olea europaea HOM05D003167 ORTHO05D003929 4.7e-60 235.7 218 62.4
CBR_g4119 Chara braunii HOM05D003167 ORTHO05D003929 7.5e-58 228.4 245 53.9
Atru.chr10.1911 Acer truncatum HOM05D003167 ORTHO05D003929 3.6e-52 209.5 274 49.6
PGR083G2067 Punica granatum HOM05D003167 ORTHO05D003929 4.0e-51 206.1 251 50.6
COL.COLO4_17620 Corchorus olitorius HOM05D003167 ORTHO05D003929 1.2e-50 204.5 256 48.8
Psat3g037760 Pisum sativum HOM05D003167 ORTHO05D003929 5.8e-50 202.2 174 65.5
Glyma.13G148300 Glycine max HOM05D003167 ORTHO05D003929 7.6e-50 201.8 176 64.8
Atru.chr10.2405 Acer truncatum HOM05D003167 ORTHO05D003929 7.8e-47 191.8 277 44.4
SEGI_24622 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 5.1e-46 189.1 179 60.3
Cc10_g12700 Coffea canephora HOM05D003167 ORTHO05D003929 3.1e-43 179.9 149 66.4
SMO364G0524 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 6.9e-43 178.7 254 45.3
Zm00001eb032700 Zea mays HOM05D003167 ORTHO05D003929 1.0e-38 164.9 125 72.8
AUR62007183 Chenopodium quinoa HOM05D003167 ORTHO05D003929 3.0e-38 163.3 261 43.3
EL10Ac3g06890 Beta vulgaris HOM05D003167 ORTHO05D003929 1.5e-37 161.0 255 42.0
Cc07_g17880 Coffea canephora HOM05D003167 ORTHO05D003929 5.3e-35 152.5 250 42.0
MD12G1102200 Malus domestica HOM05D003167 ORTHO05D003929 3.8e-33 146.4 91 85.7
Potri.001G242900 Populus trichocarpa HOM05D003167 ORTHO05D003929 2.1e-31 140.6 125 64.8
PRCOL_00002534 Prasinoderma coloniale HOM05D003167 ORTHO05D003929 4.6e-31 139.4 156 50.0
FAN26G0867 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.9e-30 136.3 255 39.6
FvH4_1g06450 Fragaria vesca HOM05D003167 ORTHO05D003929 6.7e-30 135.6 176 50.6
Eucgr.D02277 Eucalyptus grandis HOM05D003167 ORTHO05D003929 1.5e-29 134.4 253 37.5
FAN26G2184 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.5e-29 134.4 176 50.6
FAN19G3088 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.3e-29 133.3 176 50.0
FAN23G0551 Fragaria x ananassa HOM05D003167 ORTHO05D003929 5.6e-29 132.5 254 39.4
FAN28G1035 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.7e-28 129.8 259 39.0
SEGI_06196 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 8.1e-28 128.6 81 77.8
SEGI_13117 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 8.1e-28 128.6 81 77.8
AUR62007182 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.7e-25 120.9 190 45.3
RcHm_v2.0_Chr2g0092191 Rosa chinensis HOM05D003167 ORTHO05D003929 4.9e-25 119.4 257 37.0
Zm00001eb382350 Zea mays HOM05D003167 ORTHO05D003929 3.2e-24 116.7 79 82.3
Hma1.2p1_0033F.1_g020920 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 5.1e-22 109.4 152 45.4
Hma1.2p1_2996F.1_g331470 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 6.7e-22 109.0 152 46.1
CARHR131200 Cardamine hirsuta HOM05D003167 ORTHO05D003929 1.3e-20 104.8 136 44.1
Cc04_g07780 Coffea canephora HOM05D003167 ORTHO05D003929 6.2e-20 102.4 129 46.5
SMO301G0016 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 6.2e-20 102.4 263 32.7
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 1.1e-19 101.7 121 52.9
AUR62018820 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.2e-18 98.2 258 32.9
Oeu026917.1 Olea europaea HOM05D003167 ORTHO05D003929 1.0e-17 95.1 171 37.4
Sp4g05130 Schrenkiella parvula HOM05D003167 ORTHO05D003929 2.1e-15 87.4 116 52.6
Aqoxy3G01485 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 4.6e-15 86.3 190 33.2
SEGI_26849 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 1.5e-13 81.3 48 81.2
CARHR131220 Cardamine hirsuta HOM05D003167 ORTHO05D003929 5.7e-13 79.3 60 61.7
COL.COLO4_36480 Corchorus olitorius HOM05D003167 ORTHO05D003929 7.4e-13 79.0 83 59.0
RcHm_v2.0_Chr5g0072821 Rosa chinensis HOM05D003167 ORTHO05D003929 7.4e-13 79.0 44 88.6
AUR62022074 Chenopodium quinoa HOM05D003167 ORTHO05D003929 9.7e-13 78.6 114 49.1
CDE07G1466 Ceratophyllum demersum HOM05D003167 ORTHO05D003929 8.2e-12 75.5 49 71.4
AUR62009153 Chenopodium quinoa HOM05D003167 ORTHO05D003929 8.2e-12 75.5 112 48.2
Cre09.g398650 Chlamydomonas reinhardtii HOM05D003167 ORTHO05D003929 1.1e-11 75.1 243 28.4
Nitab4.5_0000883g0050 Nicotiana tabacum HOM05D003167 ORTHO05D003929 1.1e-11 75.1 66 71.2
Lj2g0005784 Lotus japonicus HOM05D003167 ORTHO05D003929 6.5e-09 65.9 115 35.7
Nitab4.5_0007768g0050 Nicotiana tabacum HOM05D003167 ORTHO05D003929 3.2e-08 63.5 128 35.2
MD12G1102100 Malus domestica HOM05D003167 ORTHO05D003929 1.6e-07 61.2 36 72.2
Medtr0130s0060 Medicago truncatula HOM05D003167 ORTHO05D003929 2.1e-07 60.8 49 57.1
AUR62022073 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.8e-06 57.8 114 39.5


User provided reference genes

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