Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 2.2e-100 369.4 254 100.0
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 2.2e-63 246.5 249 66.3
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 9.2e-62 241.1 252 62.7
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 2.3e-60 236.5 258 58.9
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 8.6e-60 234.6 250 60.8
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 7.3e-59 231.5 249 56.2
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 7.3e-59 231.5 252 61.1
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.2e-58 230.7 252 56.7
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 4.7e-58 228.8 253 58.9
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.8e-57 226.9 252 56.3
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 2.3e-57 226.5 252 61.5
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 3.0e-57 226.1 251 55.8
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 5.2e-57 225.3 252 62.3
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 5.2e-57 225.3 254 58.7
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 1.2e-56 224.2 252 54.8
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.2e-56 224.2 253 51.4
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 1.2e-56 224.2 250 54.8
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 1.2e-56 224.2 253 62.1
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 1.5e-56 223.8 254 58.3
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 2.0e-56 223.4 274 56.6
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 3.4e-56 222.6 252 53.6
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 3.4e-56 222.6 251 55.8
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 5.7e-56 221.9 256 62.5
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 7.5e-56 221.5 253 57.3
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 1.3e-55 220.7 252 60.3
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 1.7e-55 220.3 257 52.9
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 1.7e-55 220.3 251 61.4
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 2.2e-55 219.9 250 57.2
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 2.9e-55 219.5 254 55.1
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 2.9e-55 219.5 251 57.8
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 3.7e-55 219.2 253 57.3
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 3.7e-55 219.2 254 49.6
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 3.7e-55 219.2 254 61.4
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 6.4e-55 218.4 252 53.2
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 6.4e-55 218.4 252 57.1
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 8.3e-55 218.0 250 55.6
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.8e-54 216.9 246 56.5
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 1.8e-54 216.9 249 53.8
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 1.8e-54 216.9 252 56.7
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 1.8e-54 216.9 253 56.5
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 3.2e-54 216.1 252 63.9
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 3.2e-54 216.1 249 55.8
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 4.1e-54 215.7 252 54.4
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 5.4e-54 215.3 256 55.1
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 5.4e-54 215.3 249 55.4
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 9.2e-54 214.5 252 53.6
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 1.6e-53 213.8 249 51.8
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 1.6e-53 213.8 250 56.0
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 3.5e-53 212.6 246 56.9
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 4.6e-53 212.2 249 49.4
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 4.6e-53 212.2 251 52.6
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 7.8e-53 211.5 251 52.2
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 1.3e-52 210.7 234 60.3
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 1.3e-52 210.7 244 50.0
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 2.3e-52 209.9 254 55.1
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 3.0e-52 209.5 256 54.3
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 3.9e-52 209.1 256 54.7
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 5.0e-52 208.8 253 55.7
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 8.6e-52 208.0 251 56.2
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 4.3e-51 205.7 257 54.1
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 5.6e-51 205.3 281 49.8
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 7.3e-51 204.9 257 52.9
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 1.6e-50 203.8 248 50.8
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.7e-50 202.2 253 53.4
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 4.7e-50 202.2 251 54.2
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 6.2e-50 201.8 257 52.9
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 8.0e-50 201.4 255 49.8
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 1.0e-49 201.1 257 52.9
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 1.0e-49 201.1 257 52.9
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 1.0e-49 201.1 252 52.0
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 1.4e-49 200.7 259 54.8
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 1.4e-49 200.7 255 52.9
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 3.1e-49 199.5 247 65.2
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 5.2e-49 198.7 257 54.1
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 5.2e-49 198.7 256 50.0
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 6.8e-49 198.4 253 53.4
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 8.9e-49 198.0 253 53.4
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 7.5e-48 194.9 254 51.6
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 2.9e-47 193.0 252 52.4
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 4.9e-47 192.2 258 53.9
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 1.9e-46 190.3 238 59.2
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 7.0e-46 188.3 252 54.8
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 1.6e-45 187.2 255 49.4
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 3.5e-45 186.0 251 51.4
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.1e-43 181.0 213 54.5
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 1.6e-42 177.2 205 54.6
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 3.1e-41 172.9 223 55.6
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 2.0e-40 170.2 249 50.6
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 7.5e-40 168.3 258 44.2
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 8.3e-39 164.9 255 42.7
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 1.9e-38 163.7 221 52.5
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 1.7e-36 157.1 240 45.8
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 3.0e-36 156.4 233 42.5
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 3.9e-36 156.0 185 52.4
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 5.1e-36 155.6 259 47.1
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 6.6e-36 155.2 246 48.8
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 1.5e-35 154.1 181 47.5
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 3.6e-34 149.4 207 51.7
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 3.6e-34 149.4 253 36.0
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 6.8e-33 145.2 184 46.2
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 1.1e-30 137.9 125 57.6
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 1.6e-26 124.0 275 39.3
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.1e-25 119.8 154 50.0
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 3.8e-23 112.8 106 58.5
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 3.8e-23 112.8 213 42.7
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 4.9e-23 112.5 264 30.7
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.0e-20 103.2 150 41.3
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 1.1e-19 101.3 128 46.9
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 6.2e-18 95.5 160 44.4
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 1.1e-17 94.7 258 32.9
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 3.4e-16 89.7 160 36.9
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 7.6e-16 88.6 239 35.1
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 1.6e-13 80.9 86 53.5
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 9.6e-11 71.6 45 71.1
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.6e-10 70.9 94 44.7
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.6e-10 70.9 94 44.7
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 2.8e-10 70.1 124 37.1
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 6.9e-09 65.5 57 57.9
Cc04_g13050 Coffea canephora HOM05D005384 ORTHO05D006477 1.9e-06 57.4 54 44.4
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 2.4e-06 57.0 54 46.3
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 3.2e-06 56.6 54 46.3
Cre02.g105287 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D008521 4.2e-06 56.2 56 41.1
THA.LOC104801042 Tarenaya hassleriana HOM05D005384 ORTHO05D006477 4.2e-06 56.2 54 48.1
MD02G1270000 Malus domestica HOM05D005384 ORTHO05D006477 5.5e-06 55.8 62 41.9
Prupe.2G049800 Prunus persica HOM05D005384 ORTHO05D006477 5.5e-06 55.8 62 41.9
MSTRG.2272 Avicennia marina HOM05D005384 ORTHO05D006477 7.1e-06 55.5 53 47.2
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 7.1e-06 55.5 54 44.4
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 7.1e-06 55.5 54 44.4
Gohir.A12G052500 Gossypium hirsutum HOM05D005384 ORTHO05D006477 7.1e-06 55.5 67 40.3
Gohir.D12G051100 Gossypium hirsutum HOM05D005384 ORTHO05D006477 7.1e-06 55.5 67 40.3
Gorai.008G054400 Gossypium raimondii HOM05D005384 ORTHO05D006477 7.1e-06 55.5 67 40.3
QL02p064091 Quercus lobata HOM05D005384 ORTHO05D006477 7.1e-06 55.5 54 46.3
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 7.1e-06 55.5 54 46.3
arahy.Tifrunner.gnm1.ann1.EB4ABC Arachis hypogaea HOM05D005384 ORTHO05D006477 9.3e-06 55.1 70 35.7
arahy.Tifrunner.gnm1.ann1.R6E3N5 Arachis hypogaea HOM05D005384 ORTHO05D006477 9.3e-06 55.1 70 35.7
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 9.3e-06 55.1 55 43.6
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 9.3e-06 55.1 60 38.3
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 9.3e-06 55.1 60 38.3


User provided reference genes

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