Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g14260 Coffea canephora HOM05D007700 ORTHO05D009669 2.4e-148 529.6 264 100.0
Sopen02g027760 Solanum pennellii HOM05D007700 ORTHO05D009669 3.4e-86 323.2 269 65.4
PGSC0003DMG400040241 Solanum tuberosum HOM05D007700 ORTHO05D009669 2.9e-85 320.1 269 64.7
Lj2P490T20 Lonicera japonica HOM05D007700 ORTHO05D009669 5.4e-76 289.3 265 56.2
Solyc02g082970.1 Solanum lycopersicum HOM05D007700 ORTHO05D009669 7.0e-76 288.9 271 59.4
Actinidia22918 Actinidia chinensis HOM05D007700 ORTHO05D009669 2.7e-75 287.0 271 55.7
CANSAT25G3310 Cannabis sativa HOM05D007700 ORTHO05D009669 5.6e-73 279.3 270 57.0
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 7.5e-70 268.9 273 52.7
Rhsim10G0201800 Rhododendron simsii HOM05D000242 ORTHO05D009669 1.2e-67 261.5 211 60.2
Thecc.01G008500 Theobroma cacao HOM05D007700 ORTHO05D009669 2.1e-67 260.8 262 53.1
Dinv40165 Davidia involucrata HOM05D007700 ORTHO05D009669 2.7e-67 260.4 275 52.7
Rhsim10G0203000 Rhododendron simsii HOM05D000242 ORTHO05D009669 1.1e-65 255.0 207 59.9
Lj3g0022870 Lotus japonicus HOM05D007700 ORTHO05D009669 4.3e-65 253.1 269 50.6
vmacro20514 Vaccinium macrocarpon HOM05D007700 ORTHO05D009669 7.3e-65 252.3 271 48.3
Nn6g31772 Nelumbo nucifera HOM05D007700 ORTHO05D009669 8.9e-63 245.4 279 49.8
Sabra05G0085500 Salix brachista HOM05D007700 ORTHO05D009669 3.4e-62 243.4 265 52.1
Potri.005G103300 Populus trichocarpa HOM05D007700 ORTHO05D009669 5.8e-62 242.7 265 52.5
Eucgr.I02272 Eucalyptus grandis HOM05D007700 ORTHO05D009669 1.3e-61 241.5 277 47.7
ClCG01G020760 Citrullus lanatus HOM05D007700 ORTHO05D009669 2.2e-61 240.7 270 51.9
Gohir.D03G003800 Gossypium hirsutum HOM05D007700 ORTHO05D009669 2.2e-61 240.7 262 51.1
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 1.1e-60 238.4 272 50.0
Gorai.003G004000 Gossypium raimondii HOM05D007700 ORTHO05D009669 1.9e-60 237.7 264 50.4
HanXRQChr07g0192051 Helianthus annuus HOM05D007700 ORTHO05D009669 4.1e-60 236.5 271 49.1
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 5.4e-60 236.1 269 50.6
CiPaw.07G004600 Carya illinoinensis HOM05D007700 ORTHO05D009669 7.1e-60 235.7 269 48.7
Cfa007052 Carpinus fangiana HOM05D007700 ORTHO05D009669 3.5e-59 233.4 272 48.9
arahy.Tifrunner.gnm1.ann1.PXC5PH Arachis hypogaea HOM05D007700 ORTHO05D009669 6.0e-59 232.6 278 48.2
Peaxi162Scf01310g10029 Petunia axillaris HOM05D007700 ORTHO05D009669 7.8e-59 232.3 265 50.6
TAR625G0909 Trochodendron aralioides HOM05D007700 ORTHO05D009669 1.7e-58 231.1 278 49.6
Ca_23118_v3 Cicer arietinum L. HOM05D007700 ORTHO05D009669 3.9e-58 229.9 267 47.6
Dinv08534 Davidia involucrata HOM05D007700 ORTHO05D009669 4.3e-57 226.5 152 73.0
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 5.6e-57 226.1 258 47.7
arahy.Tifrunner.gnm1.ann1.HE2L98 Arachis hypogaea HOM05D007700 ORTHO05D009669 2.1e-56 224.2 276 46.7
MELO3C007960.2 Cucumis melo HOM05D007700 ORTHO05D009669 3.6e-56 223.4 270 48.9
AL3G50640 Arabidopsis lyrata HOM05D007700 ORTHO05D009669 8.1e-56 222.2 267 45.7
AT2G17670 Arabidopsis thaliana HOM05D007700 ORTHO05D009669 2.4e-55 220.7 269 44.2
Manes.01G153300 Manihot esculenta HOM05D007700 ORTHO05D009669 3.1e-55 220.3 268 47.0
Ciclev10025555m.g Citrus clementina HOM05D007700 ORTHO05D009669 5.2e-55 219.5 264 46.2
Migut.C00922 Erythranthe guttata HOM05D007700 ORTHO05D009669 5.2e-55 219.5 239 51.5
Psat4g208920 Pisum sativum HOM05D007700 ORTHO05D009669 8.9e-55 218.8 267 46.4
Sp3g31020 Schrenkiella parvula HOM05D007700 ORTHO05D009669 1.5e-54 218.0 215 49.8
Aa31LG8G14930 Aethionema arabicum HOM05D007700 ORTHO05D009669 2.0e-54 217.6 203 49.8
BcaB07g31715 Brassica carinata HOM05D007700 ORTHO05D009669 5.8e-54 216.1 267 43.8
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 1.7e-53 214.5 267 44.2
VMungo0331G0753 Vigna mungo HOM05D007700 ORTHO05D009669 1.7e-53 214.5 272 45.6
MBI05_g43154_MAGBIO Magnolia biondii HOM05D007700 ORTHO05D009669 2.2e-53 214.2 272 46.3
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 2.2e-53 214.2 270 44.4
DCAR_023138 Daucus carota HOM05D007700 ORTHO05D009669 3.8e-53 213.4 207 56.5
BolC9t54240H Brassica oleracea HOM05D007700 ORTHO05D009669 4.9e-53 213.0 264 43.9
SGA_v2.0_scaffold275G46573 Striga asiatica HOM05D007700 ORTHO05D009669 8.4e-53 212.2 238 51.7
C09p13500 Brassica napus HOM05D007700 ORTHO05D009669 1.1e-52 211.8 264 43.6
Prupe.7G178400 Prunus persica HOM05D007700 ORTHO05D009669 1.1e-52 211.8 267 44.9
PGR119G0746 Punica granatum HOM05D007700 ORTHO05D009669 3.2e-52 210.3 268 43.7
TPR.G28737 Trifolium pratense HOM05D007700 ORTHO05D009669 3.2e-52 210.3 269 45.4
Glyma.07G109000 Glycine max HOM05D007700 ORTHO05D009669 1.6e-51 208.0 267 46.4
Lsat_1_v5_gn_2_74520 Lactuca sativa HOM05D007700 ORTHO05D009669 2.1e-51 207.6 278 44.6
A09p11480 Brassica napus HOM05D007700 ORTHO05D009669 3.5e-51 206.8 265 43.8
BraA09t36788Z Brassica rapa HOM05D007700 ORTHO05D009669 4.6e-51 206.5 266 43.2
SalBow7G3569 Salvia bowleyana HOM05D007700 ORTHO05D009669 7.8e-51 205.7 237 48.5
CsaV3_6G047710 Cucumis sativus L. HOM05D007700 ORTHO05D009669 1.5e-49 201.4 270 45.2
Nitab4.5_0003207g0040 Nicotiana tabacum HOM05D007700 ORTHO05D009669 1.5e-49 201.4 151 67.5
CAN.G890.59 Capsicum annuum HOM05D007700 ORTHO05D009669 2.5e-49 200.7 151 67.5
Nitab4.5_0001581g0090 Nicotiana tabacum HOM05D007700 ORTHO05D009669 2.5e-49 200.7 151 66.9
THA.LOC104804288 Tarenaya hassleriana HOM05D007700 ORTHO05D009669 1.6e-48 198.0 274 42.0
HPP92_025432 Vanilla planifolia HOM05D007700 ORTHO05D009669 5.3e-47 193.0 280 43.9
MD02G1120600 Malus domestica HOM05D007700 ORTHO05D009669 4.9e-45 186.4 271 40.2
MSTRG.1126 Avicennia marina HOM05D007700 ORTHO05D009669 1.2e-43 181.8 228 46.9
Carub.0003s3177 Capsella rubella HOM05D007700 ORTHO05D009669 5.1e-42 176.4 243 42.0
Phvul.010G056500 Phaseolus vulgaris HOM05D007700 ORTHO05D009669 9.6e-41 172.2 276 40.9
Gohir.A02G176100 Gossypium hirsutum HOM05D007700 ORTHO05D009669 6.2e-40 169.5 148 57.4
CARHR107900 Cardamine hirsuta HOM05D007700 ORTHO05D009669 1.1e-39 168.7 227 42.7
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 2.0e-38 164.5 252 40.1
COL.COLO4_22522 Corchorus olitorius HOM05D007700 ORTHO05D009669 9.3e-36 155.6 186 47.8
FAN23G0395 Fragaria x ananassa HOM05D007700 ORTHO05D009669 4.3e-33 146.7 202 42.6
FvH4_1g10671 Fragaria vesca HOM05D007700 ORTHO05D009669 7.4e-33 146.0 202 43.1
EL10Ac6g13369 Beta vulgaris HOM05D007700 ORTHO05D009669 6.2e-32 142.9 214 41.6
Lalb_Chr03g0039951 Lupinus albus HOM05D007700 ORTHO05D009669 6.2e-32 142.9 198 44.4
Ah.03g134060 Amaranthus hybridus HOM05D007700 ORTHO05D009669 1.4e-31 141.7 198 40.4
AUR62026170 Chenopodium quinoa HOM05D007700 ORTHO05D009669 1.2e-30 138.7 196 43.4
TWI73G0108 Tripterygium wilfordii HOM05D007700 ORTHO05D009669 1.2e-30 138.7 200 43.0
AUR62041102 Chenopodium quinoa HOM05D007700 ORTHO05D009669 2.6e-30 137.5 198 44.4
Aqoxy6G01792 Aquilegia oxysepala HOM05D007700 ORTHO05D009669 2.7e-27 127.5 215 40.5
ATR0661G421 Amborella trichopoda HOM05D007700 ORTHO05D009669 9.6e-25 119.0 123 52.0
Sc03g0003890 Simmondsia chinensis HOM05D007700 ORTHO05D009669 1.3e-24 118.6 191 37.7
BcaC04g22956 Brassica carinata HOM05D007700 ORTHO05D009669 6.3e-24 116.3 112 47.3
Actinidia17391 Actinidia chinensis HOM05D000192 ORTHO05D000123 1.8e-23 114.8 111 52.3
SHI08474 Sapria himalayana HOM05D007700 ORTHO05D009669 5.9e-22 109.8 106 48.1
Glyma.03G117900 Glycine max HOM05D007700 ORTHO05D009669 3.7e-16 90.5 266 30.1
ATR0739G057 Amborella trichopoda HOM05D007700 ORTHO05D009669 1.5e-14 85.1 236 29.2
CDE05G1645 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 3.2e-12 77.4 70 51.4
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 2.0e-09 68.2 104 34.6
HanXRQChr03g0090881 Helianthus annuus HOM05D000162 ORTHO05D000090 3.3e-09 67.4 176 27.8
HanXRQChr13g0418851 Helianthus annuus HOM05D000162 ORTHO05D000090 4.3e-09 67.0 167 26.9
Nitab4.5_0005913g0040 Nicotiana tabacum HOM05D007402 ORTHO05D003673 7.4e-09 66.2 200 27.0
Psat6g065880 Pisum sativum HOM05D006895 ORTHO05D008605 7.4e-09 66.2 179 26.8
Solyc04g076370.4 Solanum lycopersicum HOM05D007402 ORTHO05D003673 7.4e-09 66.2 238 23.1
Sopen04g030130 Solanum pennellii HOM05D007402 ORTHO05D003673 7.4e-09 66.2 238 23.1
PGSC0003DMG400009341 Solanum tuberosum HOM05D007402 ORTHO05D003673 7.4e-09 66.2 238 23.1
Lj6A226T36 Lonicera japonica HOM05D006556 ORTHO05D008146 1.3e-08 65.5 190 27.4
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 1.3e-08 65.5 181 24.3
Peaxi162Scf00454g00034 Petunia axillaris HOM05D007402 ORTHO05D003673 1.7e-08 65.1 233 23.6
QL11p014332 Quercus lobata HOM05D004271 ORTHO05D006011 1.7e-08 65.1 142 23.9
Eucgr.D00236 Eucalyptus grandis HOM05D003039 ORTHO05D008410 2.2e-08 64.7 168 26.2
HanXRQChr13g0420241 Helianthus annuus HOM05D000162 ORTHO05D000090 2.8e-08 64.3 211 26.1
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 2.8e-08 64.3 200 23.5
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 3.7e-08 63.9 161 26.1
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 3.7e-08 63.9 204 25.0
HanXRQChr03g0091321 Helianthus annuus HOM05D000162 ORTHO05D000090 4.8e-08 63.5 165 29.1
ATR0580G328 Amborella trichopoda HOM05D000424 ORTHO05D000355 1.1e-07 62.4 222 23.0
ECA240G4389 Erigeron canadensis HOM05D000162 ORTHO05D000090 1.1e-07 62.4 117 28.2
Hma1.2p1_0969F.1_g242592 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 1.1e-07 62.4 147 25.9
HanXRQChr03g0091341 Helianthus annuus HOM05D000162 ORTHO05D000090 1.4e-07 62.0 165 27.3
HanXRQChr13g0420881 Helianthus annuus HOM05D000162 ORTHO05D000090 1.4e-07 62.0 211 24.6
Cpa.g.sc13.131 Carica papaya HOM05D007402 ORTHO05D003673 1.8e-07 61.6 146 31.5
HanXRQChr13g0420121 Helianthus annuus HOM05D000162 ORTHO05D000090 1.8e-07 61.6 167 26.9
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 3.1e-07 60.8 154 21.4
Lsat_1_v5_gn_1_11600 Lactuca sativa HOM05D000162 ORTHO05D000090 3.1e-07 60.8 162 27.8
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 3.1e-07 60.8 156 26.3
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 4.1e-07 60.5 151 21.9
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 4.1e-07 60.5 154 21.4
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 4.1e-07 60.5 154 21.4
Cfa003765 Carpinus fangiana HOM05D002986 ORTHO05D003966 4.1e-07 60.5 202 22.3
TPR.G2949 Trifolium pratense HOM05D003900 ORTHO05D005009 4.1e-07 60.5 203 22.2
Zm00001eb066340 Zea mays HOM05D017260 ORTHO05D014237 5.3e-07 60.1 179 24.6
CARHR196830 Cardamine hirsuta HOM05D002986 ORTHO05D003966 6.9e-07 59.7 145 24.8
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 6.9e-07 59.7 121 28.1
HanXRQChr03g0091291 Helianthus annuus HOM05D000162 ORTHO05D000090 6.9e-07 59.7 166 28.3
Sabra15G0053100 Salix brachista HOM05D003975 ORTHO05D009762 6.9e-07 59.7 101 29.7
SMO356G0401 Selaginella moellendorffii HOM05D007128 ORTHO05D000761 6.9e-07 59.7 167 24.6
TPR.G14625 Trifolium pratense HOM05D004783 ORTHO05D005581 6.9e-07 59.7 130 26.2
TPR.G37490 Trifolium pratense HOM05D002460 ORTHO05D002716 6.9e-07 59.7 177 25.4
arahy.Tifrunner.gnm1.ann1.62512W Arachis hypogaea HOM05D004271 ORTHO05D006011 9.1e-07 59.3 143 23.8
ECA240G0960 Erigeron canadensis HOM05D000162 ORTHO05D000090 9.1e-07 59.3 116 28.4
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 9.1e-07 59.3 123 26.0
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 9.1e-07 59.3 177 24.3
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 9.1e-07 59.3 175 22.9
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 9.1e-07 59.3 177 25.4
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 1.2e-06 58.9 214 23.8
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 1.2e-06 58.9 125 28.8
Lj6A176T48 Lonicera japonica HOM05D006556 ORTHO05D008146 1.2e-06 58.9 192 26.0
Lj6P230T13 Lonicera japonica HOM05D006556 ORTHO05D008146 1.2e-06 58.9 192 26.0
Lj2g0003627 Lotus japonicus HOM05D006999 ORTHO05D008936 1.2e-06 58.9 96 28.1
Os02g0321000 Oryza sativa ssp. japonica HOM05D017260 ORTHO05D014237 1.2e-06 58.9 126 29.4
Zm00001eb246390 Zea mays HOM05D000424 ORTHO05D008586 1.2e-06 58.9 93 31.2
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 1.5e-06 58.5 154 20.8
SalBow2G1987 Salvia bowleyana HOM05D007340 ORTHO05D008979 1.5e-06 58.5 134 28.4
Sc09g0006490 Simmondsia chinensis HOM05D002986 ORTHO05D003966 1.5e-06 58.5 141 24.1
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 2.0e-06 58.2 139 28.1
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 2.6e-06 57.8 154 20.8
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 2.6e-06 57.8 139 28.8
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 2.6e-06 57.8 230 22.6
Phvul.002G326200 Phaseolus vulgaris HOM05D003900 ORTHO05D005009 2.6e-06 57.8 180 22.8
CSS0020082 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 3.4e-06 57.4 152 23.0
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 3.4e-06 57.4 162 25.3
Oeu041026.1 Olea europaea HOM05D007212 ORTHO05D009094 3.4e-06 57.4 183 24.0
Phvul.008G107400 Phaseolus vulgaris HOM05D007172 ORTHO05D009267 3.4e-06 57.4 82 32.9
AL5G43620 Arabidopsis lyrata HOM05D003039 ORTHO05D008410 4.5e-06 57.0 233 20.2
arahy.Tifrunner.gnm1.ann1.3K1SXW Arachis hypogaea HOM05D000162 ORTHO05D000090 4.5e-06 57.0 159 25.8
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 4.5e-06 57.0 261 23.0
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 4.5e-06 57.0 218 22.5
ECA240G4244 Erigeron canadensis HOM05D000162 ORTHO05D000090 4.5e-06 57.0 107 29.0
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 4.5e-06 57.0 193 23.3
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 4.5e-06 57.0 124 28.2
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 4.5e-06 57.0 127 29.9
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 5.9e-06 56.6 99 29.3
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 5.9e-06 56.6 136 26.5
Nn2g12986 Nelumbo nucifera HOM05D000855 ORTHO05D008530 5.9e-06 56.6 156 26.3
VMungo0251G1173 Vigna mungo HOM05D003900 ORTHO05D005009 5.9e-06 56.6 179 22.3
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 5.9e-06 56.6 156 26.3
EL10Ac7g17850 Beta vulgaris HOM05D001779 ORTHO05D001753 7.7e-06 56.2 145 26.2
CSS0033889 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 7.7e-06 56.2 128 26.6
HanXRQChr03g0090891 Helianthus annuus HOM05D000162 ORTHO05D000090 7.7e-06 56.2 166 27.1
Lsat_1_v5_gn_2_97841 Lactuca sativa HOM05D007402 ORTHO05D003673 7.7e-06 56.2 190 27.9
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 7.7e-06 56.2 156 25.0


User provided reference genes

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