Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 8.8e-204 713.4 355 100.0
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 9.7e-110 401.0 352 63.4
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 1.3e-109 400.6 352 63.1
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 9.0e-108 394.4 299 67.9
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 1.7e-106 390.2 248 76.2
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 8.5e-106 387.9 304 69.1
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 1.4e-105 387.1 262 71.8
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 2.5e-105 386.3 262 71.4
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 2.7e-104 382.9 353 60.3
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 2.7e-104 382.9 216 82.9
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 2.7e-104 382.9 310 66.1
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 7.9e-104 381.3 222 81.5
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 1.0e-103 380.9 317 63.4
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 1.8e-103 380.2 359 60.2
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 2.3e-103 379.8 216 81.5
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 3.0e-103 379.4 298 65.1
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 3.0e-103 379.4 202 86.1
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 3.0e-103 379.4 217 79.3
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 5.1e-103 378.6 202 86.1
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 5.1e-103 378.6 262 72.1
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 5.1e-103 378.6 356 60.4
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 6.7e-103 378.3 237 76.8
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.0e-102 376.7 262 69.8
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 2.5e-102 376.3 338 60.1
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 2.5e-102 376.3 262 69.5
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 3.3e-102 375.9 262 69.5
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 4.3e-102 375.6 261 71.6
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 9.7e-102 374.4 250 74.8
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 9.7e-102 374.4 237 75.9
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 2.2e-101 373.2 261 71.3
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 2.2e-101 373.2 212 80.7
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 2.8e-101 372.9 259 69.5
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 2.8e-101 372.9 260 70.0
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 3.7e-101 372.5 202 84.2
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 4.8e-101 372.1 337 59.1
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 4.8e-101 372.1 260 70.0
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 6.3e-101 371.7 239 73.2
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 8.2e-101 371.3 253 70.0
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 1.1e-100 370.9 262 67.6
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 1.4e-100 370.5 317 60.9
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 6.9e-100 368.2 315 61.3
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 2.6e-99 366.3 317 60.9
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 2.6e-99 366.3 223 78.5
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 4.5e-99 365.5 351 58.7
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 5.9e-99 365.2 224 75.4
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 5.9e-99 365.2 224 75.4
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 5.9e-99 365.2 224 75.4
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 7.7e-99 364.8 208 80.3
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 7.7e-99 364.8 219 78.1
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 7.7e-99 364.8 214 77.1
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 1.0e-98 364.4 212 78.8
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.7e-98 363.6 224 75.4
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 6.5e-98 361.7 262 66.8
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 8.5e-98 361.3 253 67.6
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 8.5e-98 361.3 210 81.4
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 8.5e-98 361.3 260 67.7
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 1.4e-97 360.5 359 58.8
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 1.9e-97 360.1 331 59.5
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 2.5e-97 359.8 202 80.7
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 2.5e-97 359.8 216 78.2
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 4.2e-97 359.0 351 58.4
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 4.2e-97 359.0 201 81.6
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 4.2e-97 359.0 264 66.7
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 5.5e-97 358.6 227 70.9
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 5.5e-97 358.6 245 69.4
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 7.2e-97 358.2 317 60.3
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 9.4e-97 357.8 227 70.9
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 9.4e-97 357.8 227 70.9
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 1.2e-96 357.5 259 67.2
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.6e-96 357.1 263 66.5
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 3.6e-96 355.9 263 66.2
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 4.7e-96 355.5 205 77.1
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 4.7e-96 355.5 205 77.1
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 4.7e-96 355.5 313 58.8
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 7.9e-96 354.8 202 79.2
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 7.9e-96 354.8 211 77.3
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 1.0e-95 354.4 238 73.1
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 1.4e-95 354.0 349 55.6
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 2.3e-95 353.2 202 81.2
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 3.0e-95 352.8 202 77.2
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 3.9e-95 352.4 205 81.0
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 6.7e-95 351.7 201 80.1
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 1.1e-94 350.9 237 68.8
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 1.5e-94 350.5 219 75.8
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 2.0e-94 350.1 253 66.8
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 3.3e-94 349.4 201 75.6
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 3.3e-94 349.4 348 54.3
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 7.4e-94 348.2 201 79.6
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 7.4e-94 348.2 237 67.1
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 2.8e-93 346.3 233 74.2
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 3.7e-93 345.9 201 79.1
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 1.1e-92 344.4 211 75.8
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 1.8e-92 343.6 259 63.7
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 1.8e-92 343.6 201 78.6
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 2.4e-92 343.2 203 79.3
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 2.4e-92 343.2 203 75.9
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 2.4e-92 343.2 203 75.9
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 5.3e-92 342.0 195 80.5
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 7.0e-92 341.7 350 52.3
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 7.0e-92 341.7 261 65.1
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 2.0e-91 340.1 235 66.4
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 2.6e-91 339.7 261 64.8
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 2.6e-91 339.7 358 53.9
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 3.5e-91 339.3 202 76.7
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 5.9e-91 338.6 234 66.7
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 7.7e-91 338.2 202 73.8
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 7.7e-91 338.2 202 73.8
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 3.8e-90 335.9 200 77.5
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 5.0e-90 335.5 246 65.9
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 4.2e-89 332.4 200 73.5
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.8e-87 327.0 206 70.9
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 1.8e-87 327.0 348 55.7
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.8e-87 327.0 218 68.8
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 2.0e-86 323.6 258 62.8
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 3.3e-86 322.8 201 71.1
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.7e-85 320.5 218 67.9
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 3.1e-84 316.2 216 68.1
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 4.7e-80 302.4 200 65.5
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 2.4e-76 290.0 160 81.2
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 1.9e-73 280.4 203 59.6
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 9.4e-73 278.1 159 74.8
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 9.4e-73 278.1 159 78.0
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 3.6e-72 276.2 201 61.2
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 4.0e-71 272.7 198 72.2
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 2.8e-69 266.5 148 81.8
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 2.4e-68 263.5 348 46.8
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 7.7e-67 258.5 161 75.8
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 5.5e-65 252.3 145 77.9
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 1.1e-60 238.0 207 54.1
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 5.8e-54 215.7 119 79.8
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 5.6e-49 199.1 148 63.5
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 5.2e-47 192.6 155 59.4
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 7.1e-44 182.2 174 48.3
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 5.6e-33 146.0 117 53.8
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 1.6e-24 117.9 83 59.0
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 4.0e-23 113.2 209 42.6
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 1.0e-18 98.6 77 68.8
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 2.3e-18 97.4 199 38.7
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 6.6e-18 95.9 130 46.9
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 3.3e-17 93.6 195 42.1
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 5.6e-17 92.8 206 39.8
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 1.1e-12 78.6 76 61.8
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 4.3e-09 66.6 43 69.8
EL10Ac8g18949 Beta vulgaris HOM05D005195 ORTHO05D006088 3.7e-08 63.5 59 57.6
SEGI_31523 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 4.5e-06 56.6 78 38.5


User provided reference genes

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