Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 4.0e-122 441.4 222 100.0
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 6.2e-46 188.3 198 58.1
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 1.3e-43 180.6 201 54.2
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 7.0e-42 174.9 215 55.8
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 2.3e-40 169.9 207 52.7
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 5.0e-40 168.7 216 51.4
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 8.6e-40 167.9 212 52.4
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 1.1e-39 167.5 202 55.4
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 1.9e-39 166.8 213 52.1
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 3.6e-38 162.5 211 49.3
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 6.2e-38 161.8 213 53.5
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 1.1e-37 161.0 211 52.6
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.8e-37 160.2 217 48.4
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.0e-37 159.1 174 56.3
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 4.0e-37 159.1 229 50.7
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 6.8e-37 158.3 221 48.9
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 8.9e-37 157.9 183 55.7
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 2.0e-36 156.8 150 57.3
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 2.6e-36 156.4 205 53.2
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 4.4e-36 155.6 174 55.2
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 5.8e-36 155.2 220 49.5
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.7e-35 153.7 192 49.0
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 1.7e-35 153.7 192 49.5
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 4.9e-35 152.1 185 54.6
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 8.3e-35 151.4 211 48.8
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 1.4e-34 150.6 206 51.0
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.4e-34 150.6 226 50.9
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 1.9e-34 150.2 183 51.9
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 4.1e-34 149.1 206 51.9
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 9.2e-34 147.9 189 51.9
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 2.1e-33 146.7 238 47.5
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 3.5e-33 146.0 208 47.6
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 4.6e-33 145.6 139 59.0
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 1.7e-32 143.7 138 55.1
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 2.3e-32 143.3 161 53.4
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 6.6e-32 141.7 213 46.9
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 8.6e-32 141.4 214 46.7
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 1.5e-31 140.6 200 49.0
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 1.5e-31 140.6 180 51.1
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 1.9e-31 140.2 213 46.0
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 2.5e-31 139.8 172 51.2
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 4.3e-31 139.0 220 43.6
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 5.6e-31 138.7 173 50.3
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 7.3e-31 138.3 173 51.4
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 2.1e-30 136.7 203 46.3
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.8e-30 136.3 191 48.7
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 2.8e-30 136.3 231 48.1
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 8.1e-30 134.8 213 44.6
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 8.1e-30 134.8 180 50.6
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 8.1e-30 134.8 193 49.2
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.8e-29 133.7 158 50.6
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 2.3e-29 133.3 187 47.6
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 4.0e-29 132.5 198 49.5
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 1.2e-28 131.0 222 46.8
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 1.5e-28 130.6 213 44.1
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 4.4e-28 129.0 154 52.6
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 5.8e-28 128.6 170 50.6
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 9.9e-28 127.9 196 48.5
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.3e-27 127.5 191 47.1
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.3e-27 127.5 191 47.1
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 2.2e-27 126.7 223 43.9
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 2.2e-27 126.7 158 50.6
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 2.2e-27 126.7 202 47.5
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 4.9e-27 125.6 213 41.3
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 4.9e-27 125.6 141 59.6
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 8.4e-27 124.8 188 46.3
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 1.1e-26 124.4 218 45.0
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 1.1e-26 124.4 196 41.8
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 1.4e-26 124.0 219 42.9
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 5.4e-26 122.1 186 47.3
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.2e-25 120.9 198 45.5
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 1.6e-25 120.6 170 49.4
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 2.7e-25 119.8 171 45.6
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 3.5e-25 119.4 188 45.7
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 4.6e-25 119.0 191 46.6
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.3e-24 117.5 172 45.9
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 1.7e-24 117.1 182 44.0
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 1.7e-24 117.1 190 44.2
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 1.7e-24 117.1 208 42.3
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 3.0e-24 116.3 208 46.2
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 3.9e-24 115.9 193 44.0
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 5.1e-24 115.5 207 44.4
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 5.1e-24 115.5 180 47.8
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 1.1e-23 114.4 208 41.3
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 1.5e-23 114.0 181 48.6
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 1.5e-23 114.0 181 48.6
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 1.9e-23 113.6 196 41.8
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 1.9e-23 113.6 183 41.5
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 1.9e-23 113.6 183 41.5
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 1.9e-23 113.6 190 41.6
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 1.9e-23 113.6 179 43.6
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 4.3e-23 112.5 208 41.3
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 5.6e-23 112.1 193 40.9
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 9.6e-23 111.3 208 44.2
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 1.6e-22 110.5 193 42.0
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 2.1e-22 110.2 188 40.4
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 2.1e-22 110.2 188 40.4
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.1e-22 110.2 192 42.7
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 2.8e-22 109.8 193 45.6
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 3.6e-22 109.4 197 40.6
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 3.6e-22 109.4 205 39.5
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 4.7e-22 109.0 217 37.8
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 4.7e-22 109.0 170 42.9
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 6.2e-22 108.6 191 42.4
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 6.2e-22 108.6 191 41.9
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 6.2e-22 108.6 186 40.9
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 8.1e-22 108.2 190 42.1
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 1.4e-21 107.5 197 40.6
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.4e-21 107.5 150 44.7
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 4.0e-21 105.9 197 40.1
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 4.0e-21 105.9 206 41.3
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.0e-21 105.9 192 40.6
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 4.0e-21 105.9 204 41.7
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 5.2e-21 105.5 199 43.2
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 6.9e-21 105.1 175 42.9
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.2e-20 104.4 179 41.3
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 4.4e-20 102.4 213 37.6
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 2.2e-19 100.1 163 42.9
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 3.2e-18 96.3 187 39.6
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 7.1e-18 95.1 170 38.2
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 2.1e-17 93.6 192 39.1
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 2.1e-17 93.6 146 47.9
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 2.1e-17 93.6 182 40.1
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 2.7e-17 93.2 194 41.2
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 3.5e-17 92.8 195 38.5
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 3.5e-17 92.8 216 38.0
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 7.8e-17 91.7 180 42.2
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 7.8e-17 91.7 170 47.1
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.1e-15 87.8 195 39.0
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 2.8e-14 83.2 217 37.8
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 2.8e-14 83.2 212 39.2
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 4.8e-14 82.4 158 36.7
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 4.0e-13 79.3 206 35.4
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 9.0e-13 78.2 104 47.1
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 3.4e-12 76.3 204 36.8
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.3e-11 74.3 173 39.3
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 2.2e-11 73.6 215 35.8
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.1e-10 71.2 131 44.3
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.9e-10 70.5 192 38.5
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 2.4e-10 70.1 170 35.9
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 3.2e-10 69.7 183 37.2
TAR381G1423 Trochodendron aralioides HOM05D005065 ORTHO05D005944 2.1e-09 67.0 57 59.6
HPP92_005697 Vanilla planifolia HOM05D005065 ORTHO05D005944 2.1e-09 67.0 146 38.4
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 1.3e-08 64.3 126 44.4
HPP92_003138 Vanilla planifolia HOM05D005065 ORTHO05D005944 7.4e-07 58.5 163 31.9
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 4.8e-06 55.8 156 34.6


User provided reference genes

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