Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g13400 Coffea canephora HOM05D004005 ORTHO05D004876 7.4e-71 270.4 134 100.0
Cc06_g14320 Coffea canephora HOM05D004005 ORTHO05D004876 4.0e-40 168.3 125 70.4
Cc09_g08370 Coffea canephora HOM05D004005 ORTHO05D004876 1.2e-28 130.2 125 54.4
CSS0007371 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 7.3e-26 120.9 125 49.6
Dinv41324 Davidia involucrata HOM05D004005 ORTHO05D004876 9.5e-26 120.6 125 52.0
CSS0032478 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 2.1e-25 119.4 125 48.8
Oeu024901.3 Olea europaea HOM05D004005 ORTHO05D004876 1.1e-24 117.1 125 48.0
Actinidia38657 Actinidia chinensis HOM05D004005 ORTHO05D004876 1.5e-23 113.2 125 48.0
Hma1.2p1_0028F.1_g017890 Hydrangea macrophylla HOM05D004005 ORTHO05D004876 2.0e-23 112.8 125 49.6
Migut.J01404 Erythranthe guttata HOM05D004005 ORTHO05D004876 3.4e-23 112.1 120 50.0
Actinidia33309 Actinidia chinensis HOM05D004005 ORTHO05D004876 1.3e-22 110.2 125 48.0
CSS0018523 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 1.7e-22 109.8 123 48.0
Oeu045108.2 Olea europaea HOM05D004005 ORTHO05D004876 1.7e-22 109.8 126 46.8
Potri.018G100900 Populus trichocarpa HOM05D004005 ORTHO05D004876 1.7e-22 109.8 121 50.4
CSS0035914 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 4.9e-22 108.2 123 45.5
Rhsim03G0260700 Rhododendron simsii HOM05D004005 ORTHO05D004876 6.4e-22 107.8 125 46.4
Rhsim03G0261200 Rhododendron simsii HOM05D004005 ORTHO05D004876 6.4e-22 107.8 125 46.4
SGA_v2.0_scaffold233G43567 Striga asiatica HOM05D004005 ORTHO05D004876 1.1e-21 107.1 125 45.6
CSS0024178 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 1.9e-21 106.3 123 43.9
Lj9A725G34 Lonicera japonica HOM05D004005 ORTHO05D004876 2.4e-21 105.9 125 48.8
FvH4_4g08720 Fragaria vesca HOM05D004005 ORTHO05D004876 9.2e-21 104.0 125 47.2
FAN12G2564 Fragaria x ananassa HOM05D004005 ORTHO05D004876 9.2e-21 104.0 125 47.2
FAN12G2633 Fragaria x ananassa HOM05D004005 ORTHO05D004876 9.2e-21 104.0 125 47.2
COL.COLO4_10070 Corchorus olitorius HOM05D004005 ORTHO05D004876 1.2e-20 103.6 126 46.8
FAN17G1822 Fragaria x ananassa HOM05D004005 ORTHO05D004876 1.2e-20 103.6 125 47.2
vmacro06047 Vaccinium macrocarpon HOM05D004005 ORTHO05D004876 1.6e-20 103.2 133 45.1
FAN22G1768 Fragaria x ananassa HOM05D004005 ORTHO05D004876 3.5e-20 102.1 125 46.4
Hma1.2p1_0325F.1_g126020 Hydrangea macrophylla HOM05D004005 ORTHO05D004876 4.6e-20 101.7 130 44.6
Migut.K00290 Erythranthe guttata HOM05D004005 ORTHO05D004876 6.0e-20 101.3 125 46.4
Thecc.09G157600 Theobroma cacao HOM05D004005 ORTHO05D004876 6.0e-20 101.3 91 54.9
MSTRG.26250 Avicennia marina HOM05D004005 ORTHO05D004876 1.0e-19 100.5 125 44.8
ECA234G2728 Erigeron canadensis HOM05D004005 ORTHO05D004876 1.3e-19 100.1 77 58.4
RcHm_v2.0_Chr4g0405201 Rosa chinensis HOM05D004005 ORTHO05D004876 2.3e-19 99.4 125 44.8
Atru.chr7.422 Acer truncatum HOM05D004005 ORTHO05D004876 3.9e-19 98.6 106 50.0
TAR636G3166 Trochodendron aralioides HOM05D004005 ORTHO05D004876 5.1e-19 98.2 125 43.2
MD13G1275200 Malus domestica HOM05D004005 ORTHO05D004876 8.6e-19 97.4 125 43.2
Sc14g0001030 Simmondsia chinensis HOM05D004005 ORTHO05D004876 8.6e-19 97.4 124 41.1
Duzib150G0934 Durio zibethinus HOM05D004005 ORTHO05D004876 1.1e-18 97.1 129 45.0
Manes.14G150200 Manihot esculenta HOM05D004005 ORTHO05D004876 1.1e-18 97.1 77 58.4
Gohir.D08G098200 Gossypium hirsutum HOM05D004005 ORTHO05D004876 1.5e-18 96.7 126 42.9
Gorai.004G105600 Gossypium raimondii HOM05D004005 ORTHO05D004876 1.5e-18 96.7 126 42.9
QL02p094609 Quercus lobata HOM05D004005 ORTHO05D004876 1.5e-18 96.7 78 57.7
Sabra18G0086900 Salix brachista HOM05D004005 ORTHO05D004876 1.5e-18 96.7 84 56.0
ECA240G0337 Erigeron canadensis HOM05D004005 ORTHO05D004876 1.9e-18 96.3 114 41.2
MD16G1260700 Malus domestica HOM05D004005 ORTHO05D004876 2.5e-18 95.9 125 43.2
PGSC0003DMG400011163 Solanum tuberosum HOM05D004005 ORTHO05D004876 3.3e-18 95.5 125 43.2
Cpa.g.sc199.4 Carica papaya HOM05D004005 ORTHO05D004876 4.3e-18 95.1 138 42.8
Peaxi162Scf00038g00320 Petunia axillaris HOM05D004005 ORTHO05D004876 4.3e-18 95.1 125 43.2
Prupe.1G100000 Prunus persica HOM05D004005 ORTHO05D004876 4.3e-18 95.1 128 45.3
Sed0005377 Sechium edule HOM05D004005 ORTHO05D004876 4.3e-18 95.1 70 61.4
Duzib187G0310 Durio zibethinus HOM05D004005 ORTHO05D004876 7.3e-18 94.4 126 42.9
TWI34G0830 Tripterygium wilfordii HOM05D004005 ORTHO05D004876 7.3e-18 94.4 113 48.7
Gohir.A08G092600 Gossypium hirsutum HOM05D004005 ORTHO05D004876 9.5e-18 94.0 126 42.1
Lsat_1_v5_gn_5_88220 Lactuca sativa HOM05D004005 ORTHO05D004876 1.2e-17 93.6 78 55.1
Nitab4.5_0002545g0030 Nicotiana tabacum HOM05D004005 ORTHO05D004876 1.6e-17 93.2 125 43.2
ClCG06G012740 Citrullus lanatus HOM05D004005 ORTHO05D004876 2.8e-17 92.4 70 60.0
Eucgr.C01238 Eucalyptus grandis HOM05D004005 ORTHO05D004876 2.8e-17 92.4 124 45.2
TWI63G1233 Tripterygium wilfordii HOM05D004005 ORTHO05D004876 2.8e-17 92.4 113 47.8
Haze_21258 Corylus avellana HOM05D004005 ORTHO05D004876 3.6e-17 92.0 69 60.9
Duzib168G0635 Durio zibethinus HOM05D004005 ORTHO05D004876 3.6e-17 92.0 78 55.1
HanXRQChr10g0307841 Helianthus annuus HOM05D004005 ORTHO05D004876 3.6e-17 92.0 75 58.7
Lsat_1_v5_gn_7_51181 Lactuca sativa HOM05D004005 ORTHO05D004876 3.6e-17 92.0 84 52.4
CSS0036046 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 6.2e-17 91.3 67 59.7
Lalb_Chr12g0198871 Lupinus albus HOM05D004005 ORTHO05D004876 6.2e-17 91.3 70 61.4
DCAR_017932 Daucus carota HOM05D004005 ORTHO05D004876 8.1e-17 90.9 80 55.0
HanXRQChr03g0065981 Helianthus annuus HOM05D004005 ORTHO05D004876 8.1e-17 90.9 114 41.2
Solyc07g006160.3 Solanum lycopersicum HOM05D004005 ORTHO05D004876 8.1e-17 90.9 125 40.8
Sopen07g002270 Solanum pennellii HOM05D004005 ORTHO05D004876 8.1e-17 90.9 125 40.8
GSVIVG01023713001 Vitis vinifera HOM05D004005 ORTHO05D004876 8.1e-17 90.9 128 43.8
MELO3C010189.2 Cucumis melo HOM05D004005 ORTHO05D004876 1.1e-16 90.5 70 60.0
Glyma.17G069900 Glycine max HOM05D004005 ORTHO05D004876 1.1e-16 90.5 129 41.9
PGR102G1327 Punica granatum HOM05D004005 ORTHO05D004876 1.4e-16 90.1 90 53.3
RcHm_v2.0_Chr2g0167931 Rosa chinensis HOM05D004005 ORTHO05D004876 1.4e-16 90.1 84 52.4
CsaV3_1G029280 Cucumis sativus L. HOM05D004005 ORTHO05D004876 3.1e-16 89.0 64 62.5
TAR383G0968 Trochodendron aralioides HOM05D004005 ORTHO05D004876 3.1e-16 89.0 145 40.7
BcaNung00559 Brassica carinata HOM05D004005 ORTHO05D004876 4.0e-16 88.6 72 56.9
unitig_0.g2693 Utricularia gibba HOM05D004005 ORTHO05D004876 4.0e-16 88.6 119 45.4
Nitab4.5_0003269g0020 Nicotiana tabacum HOM05D004005 ORTHO05D004876 6.8e-16 87.8 125 42.4
Ciclev10008098m.g Citrus clementina HOM05D004005 ORTHO05D004876 8.9e-16 87.4 87 55.2
CAN.G1190.5 Capsicum annuum HOM05D004005 ORTHO05D004876 1.2e-15 87.0 125 40.8
Psat0s3878g0040 Pisum sativum HOM05D004005 ORTHO05D004876 1.2e-15 87.0 65 61.5
Lj4g0005184 Lotus japonicus HOM05D004005 ORTHO05D004876 2.0e-15 86.3 65 64.6
Phvul.003G152600 Phaseolus vulgaris HOM05D004005 ORTHO05D004876 2.0e-15 86.3 65 61.5
Thhalv10025004m.g Eutrema salsugineum HOM05D004005 ORTHO05D004876 2.6e-15 85.9 77 51.9
Medtr4g129950 Medicago truncatula HOM05D004005 ORTHO05D004876 2.6e-15 85.9 65 60.0
PSO782G3855 Papaver somniferum HOM05D004005 ORTHO05D004876 2.6e-15 85.9 110 43.6
SalBow6G1392 Salvia bowleyana HOM05D004005 ORTHO05D004876 2.6e-15 85.9 100 46.0
BcaNung01599 Brassica carinata HOM05D004005 ORTHO05D004876 3.4e-15 85.5 110 43.6
Carub.0007s1271 Capsella rubella HOM05D004005 ORTHO05D004876 3.4e-15 85.5 108 44.4
PSO063G3364 Papaver somniferum HOM05D004005 ORTHO05D004876 3.4e-15 85.5 110 43.6
TPR.G24854 Trifolium pratense HOM05D004005 ORTHO05D004876 3.4e-15 85.5 66 57.6
A03p59900 Brassica napus HOM05D004005 ORTHO05D004876 4.4e-15 85.1 76 53.9
Sp7g26020 Schrenkiella parvula HOM05D004005 ORTHO05D004876 4.4e-15 85.1 115 43.5
Sp7g28370 Schrenkiella parvula HOM05D004005 ORTHO05D004876 4.4e-15 85.1 105 42.9
AT4G30490 Arabidopsis thaliana HOM05D004005 ORTHO05D004876 5.8e-15 84.7 90 47.8
BcaC09g50514 Brassica carinata HOM05D004005 ORTHO05D004876 5.8e-15 84.7 72 56.9
C07p57960 Brassica napus HOM05D004005 ORTHO05D004876 5.8e-15 84.7 115 45.2
BolC7t46254H Brassica oleracea HOM05D004005 ORTHO05D004876 5.8e-15 84.7 115 45.2
FAN12G2076 Fragaria x ananassa HOM05D004005 ORTHO05D004876 5.8e-15 84.7 154 36.4
VMungo1215G0146 Vigna mungo HOM05D004005 ORTHO05D004876 5.8e-15 84.7 65 60.0
AL7G21650 Arabidopsis lyrata HOM05D004005 ORTHO05D004876 7.6e-15 84.3 72 52.8
AUR62039768 Chenopodium quinoa HOM05D004005 ORTHO05D004876 7.6e-15 84.3 124 40.3
THA.LOC104817817 Tarenaya hassleriana HOM05D004005 ORTHO05D004876 7.6e-15 84.3 123 42.3
BraA01t01885Z Brassica rapa HOM05D004005 ORTHO05D004876 9.9e-15 84.0 106 45.3
EL10Ac8g18886 Beta vulgaris HOM05D004005 ORTHO05D004876 1.3e-14 83.6 94 45.7
Carub.0007s1010 Capsella rubella HOM05D004005 ORTHO05D004876 1.3e-14 83.6 72 52.8
Lalb_Chr13g0300621 Lupinus albus HOM05D004005 ORTHO05D004876 1.3e-14 83.6 65 60.0
AL7G24540 Arabidopsis lyrata HOM05D004005 ORTHO05D004876 1.7e-14 83.2 111 45.0
AT4G28070 Arabidopsis thaliana HOM05D004005 ORTHO05D004876 1.7e-14 83.2 111 45.0
Glyma.02G207800 Glycine max HOM05D004005 ORTHO05D004876 1.7e-14 83.2 86 48.8
Peaxi162Scf00038g00327 Petunia axillaris HOM05D004005 ORTHO05D004876 1.7e-14 83.2 54 64.8
A01p19450 Brassica napus HOM05D004005 ORTHO05D004876 2.2e-14 82.8 47 76.6
C01p24500 Brassica napus HOM05D004005 ORTHO05D004876 2.2e-14 82.8 47 76.6
BolC1t02399H Brassica oleracea HOM05D004005 ORTHO05D004876 2.2e-14 82.8 47 76.6
CDE04G0214 Ceratophyllum demersum HOM05D004005 ORTHO05D004876 2.2e-14 82.8 131 38.2
CiPaw.08G000800 Carya illinoinensis HOM05D004005 ORTHO05D004876 2.9e-14 82.4 67 56.7
Ca_21161_v3 Cicer arietinum L. HOM05D004005 ORTHO05D004876 2.9e-14 82.4 65 56.9
Aqoxy5G00992 Aquilegia oxysepala HOM05D004005 ORTHO05D004876 3.7e-14 82.0 84 52.4
DCAR_020096 Daucus carota HOM05D004005 ORTHO05D004876 4.9e-14 81.6 70 47.1
Thhalv10025101m.g Eutrema salsugineum HOM05D004005 ORTHO05D004876 4.9e-14 81.6 72 54.2
arahy.Tifrunner.gnm1.ann1.GLFY1J Arachis hypogaea HOM05D004005 ORTHO05D004876 6.4e-14 81.3 62 62.9
arahy.Tifrunner.gnm1.ann1.GWW68B Arachis hypogaea HOM05D004005 ORTHO05D004876 6.4e-14 81.3 62 62.9
THA.LOC104819957 Tarenaya hassleriana HOM05D004005 ORTHO05D004876 6.4e-14 81.3 60 58.3
BraA03t15047Z Brassica rapa HOM05D004005 ORTHO05D004876 8.4e-14 80.9 76 51.3
MBI14_g16417_MAGBIO Magnolia biondii HOM05D004005 ORTHO05D004876 8.4e-14 80.9 141 36.9
CARHR238380 Cardamine hirsuta HOM05D004005 ORTHO05D004876 4.1e-13 78.6 68 51.5
CDE02G0320 Ceratophyllum demersum HOM05D004005 ORTHO05D004876 4.1e-13 78.6 131 38.9
Os08g0265500 Oryza sativa ssp. japonica HOM05D004005 ORTHO05D004876 1.6e-12 76.6 92 45.7
Zm00001eb076820 Zea mays HOM05D004005 ORTHO05D004876 3.5e-12 75.5 77 46.8
Zm00001eb426980 Zea mays HOM05D004005 ORTHO05D004876 3.5e-12 75.5 129 34.1
Aa31LG2G20040 Aethionema arabicum HOM05D004005 ORTHO05D004876 5.1e-11 71.6 51 58.8
AUR62028391 Chenopodium quinoa HOM05D004005 ORTHO05D004876 5.1e-11 71.6 46 69.6
HPP92_000253 Vanilla planifolia HOM05D004005 ORTHO05D004876 1.9e-10 69.7 68 48.5
ATR0580G234 Amborella trichopoda HOM05D004005 ORTHO05D004876 1.1e-08 63.9 45 60.0
SEGI_21312 Sequoiadendron giganteum HOM05D004005 ORTHO05D004876 1.2e-07 60.5 66 48.5


User provided reference genes

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