Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g13160 Coffea canephora HOM05D002603 ORTHO05D002907 3.8e-81 304.7 145 100.0
Sabra16G0038000 Salix brachista HOM05D002603 ORTHO05D002907 2.5e-40 169.1 243 45.3
Cc06_g19640 Coffea canephora HOM05D002603 ORTHO05D002907 8.1e-39 164.1 209 51.2
Cc00_g08220 Coffea canephora HOM05D002603 ORTHO05D002907 1.4e-38 163.3 78 98.7
Oeu005204.2 Olea europaea HOM05D002603 ORTHO05D002907 6.9e-38 161.0 245 43.3
Lalb_Chr22g0357531 Lupinus albus HOM05D002603 ORTHO05D002907 1.9e-35 152.9 235 42.1
Actinidia17958 Actinidia chinensis HOM05D002603 ORTHO05D002907 5.4e-35 151.4 209 48.8
Potri.016G035700 Populus trichocarpa HOM05D002603 ORTHO05D002907 7.1e-35 151.0 207 48.8
Prupe.4G082800 Prunus persica HOM05D002603 ORTHO05D002907 1.2e-34 150.2 218 43.6
Prupe.7G034500 Prunus persica HOM05D002603 ORTHO05D002907 1.2e-34 150.2 245 41.2
Solyc12g021180.2 Solanum lycopersicum HOM05D002603 ORTHO05D002907 1.2e-34 150.2 241 40.2
Nitab4.5_0004629g0060 Nicotiana tabacum HOM05D002603 ORTHO05D002907 1.6e-34 149.8 237 41.8
Prupe.7G034700 Prunus persica HOM05D002603 ORTHO05D002907 1.6e-34 149.8 213 44.1
Sopen12g011090 Solanum pennellii HOM05D002603 ORTHO05D002907 1.6e-34 149.8 213 47.4
CiPaw.09G048800 Carya illinoinensis HOM05D002603 ORTHO05D002907 3.5e-34 148.7 222 46.4
Manes.09G003600 Manihot esculenta HOM05D002603 ORTHO05D002907 3.5e-34 148.7 235 41.7
Nitab4.5_0013137g0010 Nicotiana tabacum HOM05D002603 ORTHO05D002907 3.5e-34 148.7 237 41.8
Cfa019995 Carpinus fangiana HOM05D002603 ORTHO05D002907 7.9e-34 147.5 222 43.7
Hma1.2p1_0252F.1_g102820 Hydrangea macrophylla HOM05D002603 ORTHO05D002907 1.3e-33 146.7 210 47.1
CSS0025737 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 1.8e-33 146.4 237 41.4
Haze_20237 Corylus avellana HOM05D002603 ORTHO05D002907 1.8e-33 146.4 250 39.2
Potri.006G040300 Populus trichocarpa HOM05D002603 ORTHO05D002907 1.8e-33 146.4 204 48.5
Sabra06G0027200 Salix brachista HOM05D002603 ORTHO05D002907 1.8e-33 146.4 232 42.2
THA.LOC104823207 Tarenaya hassleriana HOM05D002603 ORTHO05D002907 2.3e-33 146.0 209 45.9
GSVIVG01025743001 Vitis vinifera HOM05D002603 ORTHO05D002907 2.3e-33 146.0 217 44.7
CAN.G8.30 Capsicum annuum HOM05D002603 ORTHO05D002907 3.0e-33 145.6 241 39.8
Atru.chr1.1397 Acer truncatum HOM05D002603 ORTHO05D002907 3.9e-33 145.2 241 41.1
MSTRG.19795 Avicennia marina HOM05D002603 ORTHO05D002907 5.1e-33 144.8 210 46.7
MD12G1096300 Malus domestica HOM05D002603 ORTHO05D002907 5.1e-33 144.8 244 39.8
Peaxi162Scf00076g00319 Petunia axillaris HOM05D002603 ORTHO05D002907 5.1e-33 144.8 242 39.3
SalBow6G2761 Salvia bowleyana HOM05D002603 ORTHO05D002907 6.7e-33 144.4 209 45.9
Dinv03205 Davidia involucrata HOM05D002603 ORTHO05D002907 8.7e-33 144.1 209 46.9
FAN01G0401 Fragaria x ananassa HOM05D002603 ORTHO05D002907 8.7e-33 144.1 196 44.4
FAN10G2006 Fragaria x ananassa HOM05D002603 ORTHO05D002907 8.7e-33 144.1 207 43.5
RcHm_v2.0_Chr0c29g0501071 Rosa chinensis HOM05D002603 ORTHO05D002907 1.1e-32 143.7 236 40.3
RcHm_v2.0_Chr1g0337841 Rosa chinensis HOM05D002603 ORTHO05D002907 1.1e-32 143.7 236 40.3
MBI19_g14620_MAGBIO Magnolia biondii HOM05D002603 ORTHO05D002907 1.5e-32 143.3 234 40.2
MBI19_g45267_MAGBIO Magnolia biondii HOM05D002603 ORTHO05D002907 1.5e-32 143.3 234 40.2
Rhsim03G0036700 Rhododendron simsii HOM05D002603 ORTHO05D002907 1.5e-32 143.3 237 40.1
Migut.J01643 Erythranthe guttata HOM05D002603 ORTHO05D002907 1.9e-32 142.9 237 40.5
FAN03G1791 Fragaria x ananassa HOM05D002603 ORTHO05D002907 3.3e-32 142.1 207 42.5
CSS0034722 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 4.3e-32 141.7 237 40.9
FvH4_7g07280 Fragaria vesca HOM05D002603 ORTHO05D002907 4.3e-32 141.7 208 42.3
FAN06G3043 Fragaria x ananassa HOM05D002603 ORTHO05D002907 4.3e-32 141.7 208 42.3
SGA_v2.0_scaffold66G22265 Striga asiatica HOM05D004207 ORTHO05D002907 4.3e-32 141.7 237 39.7
SGA_v2.0_scaffold69G23162 Striga asiatica HOM05D004207 ORTHO05D005188 4.3e-32 141.7 233 39.1
CANSAT64G0741 Cannabis sativa HOM05D002603 ORTHO05D002907 7.4e-32 141.0 247 39.3
Ciclev10012015m.g Citrus clementina HOM05D002603 ORTHO05D002907 7.4e-32 141.0 214 44.9
QL07p011359 Quercus lobata HOM05D002603 ORTHO05D002907 7.4e-32 141.0 220 44.1
Thecc.05G127600 Theobroma cacao HOM05D002603 ORTHO05D002907 7.4e-32 141.0 243 39.5
unitig_699.g19524 Utricularia gibba HOM05D002603 ORTHO05D002907 3.7e-31 138.7 211 43.6
vmacro07780 Vaccinium macrocarpon HOM05D002603 ORTHO05D002907 3.7e-31 138.7 208 45.7
MELO3C026602.2 Cucumis melo HOM05D002603 ORTHO05D002907 8.1e-31 137.5 245 38.4
Gohir.D11G322300 Gossypium hirsutum HOM05D002603 ORTHO05D002907 8.1e-31 137.5 244 38.9
MSTRG.10788 Avicennia marina HOM05D002603 ORTHO05D002907 1.1e-30 137.1 209 43.1
Ca_08382_v3 Cicer arietinum L. HOM05D002603 ORTHO05D002907 1.1e-30 137.1 235 40.0
Glyma.03G126200 Glycine max HOM05D002603 ORTHO05D002907 1.1e-30 137.1 229 40.2
DCAR_009136 Daucus carota HOM05D002603 ORTHO05D002907 1.4e-30 136.7 209 43.1
MD14G1089400 Malus domestica HOM05D002603 ORTHO05D002907 1.8e-30 136.3 244 38.1
Lj1g0009963 Lotus japonicus HOM05D002603 ORTHO05D002907 3.1e-30 135.6 209 44.5
Glyma.19G129300 Glycine max HOM05D002603 ORTHO05D002907 5.3e-30 134.8 229 39.7
Cpa.g.sc92.80 Carica papaya HOM05D002603 ORTHO05D002907 6.9e-30 134.4 108 64.8
PGR031G2792 Punica granatum HOM05D002603 ORTHO05D002907 6.9e-30 134.4 214 43.0
Psat3g079800 Pisum sativum HOM05D002603 ORTHO05D002907 1.2e-29 133.7 234 39.3
Sc25g0005460 Simmondsia chinensis HOM05D002603 ORTHO05D002907 1.2e-29 133.7 200 43.0
arahy.Tifrunner.gnm1.ann1.NB81DJ Arachis hypogaea HOM05D002603 ORTHO05D002907 1.5e-29 133.3 240 38.3
CsaV3_3G043000 Cucumis sativus L. HOM05D002603 ORTHO05D002907 1.5e-29 133.3 245 38.0
Eucgr.A02231 Eucalyptus grandis HOM05D002603 ORTHO05D002907 2.0e-29 132.9 239 38.5
TPR.G16084 Trifolium pratense HOM05D002603 ORTHO05D002907 4.5e-29 131.7 111 61.3
CSS0004855 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 5.8e-29 131.3 107 64.5
TAR625G1189 Trochodendron aralioides HOM05D002603 ORTHO05D002907 5.8e-29 131.3 110 62.7
PSO339G5736 Papaver somniferum HOM05D002603 ORTHO05D002907 7.6e-29 131.0 107 64.5
CDE08G1322 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 1.3e-28 130.2 111 60.4
Lalb_Chr24g0400401 Lupinus albus HOM05D002603 ORTHO05D002907 1.7e-28 129.8 74 81.1
AUR62030304 Chenopodium quinoa HOM05D002603 ORTHO05D002907 2.2e-28 129.4 207 41.5
PSO384G0250 Papaver somniferum HOM05D002603 ORTHO05D002907 2.2e-28 129.4 107 63.6
arahy.Tifrunner.gnm1.ann1.K86MNX Arachis hypogaea HOM05D002603 ORTHO05D002907 2.9e-28 129.0 240 37.5
Gohir.A11G306800 Gossypium hirsutum HOM05D002603 ORTHO05D002907 2.9e-28 129.0 111 62.2
VMungo1383G3140 Vigna mungo HOM05D002603 ORTHO05D002907 2.9e-28 129.0 107 64.5
Phvul.001G121600 Phaseolus vulgaris HOM05D002603 ORTHO05D002907 3.8e-28 128.6 205 42.4
TWI74G0363 Tripterygium wilfordii HOM05D002603 ORTHO05D002907 6.4e-28 127.9 239 38.9
RcHm_v2.0_Chr1g0337741 Rosa chinensis HOM05D002603 ORTHO05D002907 8.4e-28 127.5 240 37.9
HPP92_015454 Vanilla planifolia HOM05D002603 ORTHO05D002907 1.9e-27 126.3 110 59.1
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 4.2e-27 125.2 111 59.5
ATR0307G070 Amborella trichopoda HOM05D002603 ORTHO05D002907 7.1e-27 124.4 110 61.8
SGA_v2.0_scaffold66G22361 Striga asiatica HOM05D002603 ORTHO05D002907 7.1e-27 124.4 112 59.8
Medtr7g089540 Medicago truncatula HOM05D002603 ORTHO05D002907 9.3e-27 124.0 107 60.7
EL10Ac3g07250 Beta vulgaris HOM05D002603 ORTHO05D002907 1.2e-26 123.6 207 41.5
Lsat_1_v5_gn_5_156820 Lactuca sativa HOM05D002603 ORTHO05D002907 1.8e-25 119.8 107 61.7
HanXRQChr01g0008101 Helianthus annuus HOM05D002603 ORTHO05D002907 2.3e-25 119.4 107 59.8
ECA248G3411 Erigeron canadensis HOM05D002603 ORTHO05D002907 6.7e-25 117.9 128 55.5
Gorai.007G352400 Gossypium raimondii HOM05D002603 ORTHO05D002907 6.7e-25 117.9 280 33.6
RcHm_v2.0_Chr1g0337541 Rosa chinensis HOM05D002603 ORTHO05D002907 6.7e-25 117.9 70 78.6
ECA233G2731 Erigeron canadensis HOM05D002603 ORTHO05D002907 4.3e-24 115.2 107 57.9
Hund19086 Selenicereus undatus HOM05D002603 ORTHO05D002907 4.3e-24 115.2 107 59.8
AUR62018358 Chenopodium quinoa HOM05D002603 ORTHO05D002907 3.7e-23 112.1 192 40.6
Os11g0136800 Oryza sativa ssp. japonica HOM05D002603 ORTHO05D002907 3.7e-23 112.1 110 54.5
Os12g0133700 Oryza sativa ssp. japonica HOM05D002603 ORTHO05D002907 3.7e-23 112.1 110 54.5
Zm00001eb093380 Zea mays HOM05D002603 ORTHO05D002907 3.7e-23 112.1 112 52.7
ECA233G3050 Erigeron canadensis HOM05D002603 ORTHO05D002907 2.4e-22 109.4 107 55.1
ECA234G4417 Erigeron canadensis HOM05D002603 ORTHO05D002907 1.5e-21 106.7 107 55.1
CSS0006853 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 1.7e-20 103.2 91 61.5
ECA233G1535 Erigeron canadensis HOM05D002603 ORTHO05D002907 2.9e-20 102.4 107 54.2
Thhalv10005645m.g Eutrema salsugineum HOM05D002603 ORTHO05D002907 6.5e-20 101.3 181 39.8
Nn7g36821 Nelumbo nucifera HOM05D002603 ORTHO05D002907 1.1e-19 100.5 58 77.6
RcHm_v2.0_Chr1g0337801 Rosa chinensis HOM05D002603 ORTHO05D002907 7.9e-18 94.4 53 77.4
BcaB08g34381 Brassica carinata HOM05D002603 ORTHO05D002907 1.8e-17 93.2 200 36.0
Mapoly0062s0043 Marchantia polymorpha HOM05D002603 ORTHO05D002907 2.3e-17 92.8 106 46.2
Prupe.4G265900 Prunus persica HOM05D002603 ORTHO05D002907 3.9e-17 92.0 95 55.8
CiPaw.10G040800 Carya illinoinensis HOM05D002603 ORTHO05D002907 6.7e-17 91.3 62 72.6
Carub.0006s0316 Capsella rubella HOM05D002603 ORTHO05D002907 1.1e-16 90.5 109 48.6
Thhalv10027467m.g Eutrema salsugineum HOM05D002603 ORTHO05D002907 1.1e-16 90.5 70 64.3
Peaxi162Scf01087g00001 Petunia axillaris HOM05D002603 ORTHO05D002907 3.3e-16 89.0 90 53.3
CARHR161780 Cardamine hirsuta HOM05D002603 ORTHO05D002907 4.3e-16 88.6 109 47.7
AL3G34390 Arabidopsis lyrata HOM05D002603 ORTHO05D002907 9.7e-16 87.4 109 47.7
Prupe.7G035100 Prunus persica HOM05D002603 ORTHO05D002907 9.7e-16 87.4 77 61.0
Lj1A1089G59 Lonicera japonica HOM05D002603 ORTHO05D002907 2.8e-15 85.9 80 61.2
Cc00_g15400 Coffea canephora HOM05D002603 ORTHO05D002907 4.8e-15 85.1 81 59.3
Sed0008427 Sechium edule HOM05D002603 ORTHO05D002907 4.8e-15 85.1 215 32.6
A09p62310 Brassica napus HOM05D002603 ORTHO05D002907 6.3e-15 84.7 109 46.8
BraA09t41593Z Brassica rapa HOM05D002603 ORTHO05D002907 6.3e-15 84.7 109 46.8
TAR623G0758 Trochodendron aralioides HOM05D002603 ORTHO05D002907 6.3e-15 84.7 67 65.7
BolC8t52139H Brassica oleracea HOM05D002603 ORTHO05D002907 1.1e-14 84.0 109 45.9
MD07G1116400 Malus domestica HOM05D002603 ORTHO05D002907 1.1e-14 84.0 182 37.4
SMO134G0105 Selaginella moellendorffii HOM05D002603 ORTHO05D002907 2.4e-14 82.8 110 42.7
BcaC07g41585 Brassica carinata HOM05D002603 ORTHO05D002907 5.3e-14 81.6 109 45.0
C08p45870 Brassica napus HOM05D002603 ORTHO05D002907 5.3e-14 81.6 109 45.0
Pp3c23_1130 Physcomitrium patens HOM05D002603 ORTHO05D002907 5.3e-14 81.6 110 43.6
SMO340G0300 Selaginella moellendorffii HOM05D002603 ORTHO05D002907 1.2e-13 80.5 119 39.5
CSS0017575 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 7.7e-13 77.8 237 30.4
Pp3c20_10210 Physcomitrium patens HOM05D002603 ORTHO05D002907 2.9e-12 75.9 110 41.8
Pp3c22_9770 Physcomitrium patens HOM05D002603 ORTHO05D002907 8.5e-12 74.3 69 52.2
Cc00_g21340 Coffea canephora HOM05D002603 ORTHO05D002907 1.4e-11 73.6 36 94.4
CBR_g31863 Chara braunii HOM05D000019 ORTHO05D000002 7.2e-11 71.2 114 34.2
Peaxi162Scf00406g00712 Petunia axillaris HOM05D002603 ORTHO05D002907 7.9e-10 67.8 36 83.3
CSS0000794 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 2.3e-09 66.2 246 28.0
SMO196G0041 Selaginella moellendorffii HOM05D002603 ORTHO05D004632 9.7e-08 60.8 149 31.5
SMO137G0144 Selaginella moellendorffii HOM05D002603 ORTHO05D002907 8.2e-07 57.8 107 35.5
Duzib128G0797 Durio zibethinus HOM05D002603 ORTHO05D002907 4.1e-06 55.5 31 83.9


User provided reference genes

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