Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 6.3e-169 597.4 318 100.0
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 1.4e-96 357.1 259 69.5
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 7.1e-96 354.8 256 68.4
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 1.2e-95 354.0 263 67.7
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.3e-94 350.5 275 64.0
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 3.9e-94 349.0 277 62.5
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 1.3e-92 344.0 258 67.4
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 1.6e-92 343.6 256 66.8
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 6.2e-92 341.7 264 61.7
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 6.2e-92 341.7 264 61.7
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 8.1e-92 341.3 284 63.4
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 1.1e-91 340.9 264 65.5
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 4.0e-91 339.0 258 67.1
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 6.9e-91 338.2 265 63.4
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 9.0e-91 337.8 252 66.7
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 1.2e-90 337.4 264 60.6
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 2.6e-90 336.3 254 66.9
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 2.6e-90 336.3 249 66.3
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 1.3e-89 334.0 241 69.3
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 2.9e-89 332.8 270 62.6
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 3.8e-89 332.4 255 64.3
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 3.8e-89 332.4 262 61.8
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 4.9e-89 332.0 248 66.1
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 1.4e-88 330.5 236 68.2
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 1.4e-88 330.5 279 61.6
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 1.9e-88 330.1 257 64.6
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 2.4e-88 329.7 233 70.0
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 2.4e-88 329.7 238 69.7
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 2.4e-88 329.7 268 63.1
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 3.2e-88 329.3 256 64.1
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 3.2e-88 329.3 280 61.1
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 2.7e-87 326.2 272 61.4
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 3.5e-87 325.9 264 61.0
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 3.5e-87 325.9 256 63.7
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 1.3e-86 323.9 244 65.2
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 2.3e-86 323.2 258 63.2
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.1e-86 322.0 268 60.8
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 3.3e-85 319.3 259 61.4
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 5.6e-85 318.5 235 66.8
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 7.4e-85 318.2 260 60.8
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 9.6e-85 317.8 270 59.6
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 1.3e-84 317.4 260 63.1
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 1.6e-84 317.0 278 59.0
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 1.6e-84 317.0 251 61.8
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 2.1e-84 316.6 258 60.5
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 2.8e-84 316.2 260 60.4
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 3.7e-84 315.8 257 61.5
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 4.8e-84 315.5 255 63.9
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 8.2e-84 314.7 252 61.9
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 1.2e-82 310.8 260 58.8
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 2.0e-82 310.1 231 69.7
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 2.6e-82 309.7 259 60.6
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 4.5e-82 308.9 259 60.2
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 2.2e-81 306.6 247 64.0
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 4.9e-81 305.4 263 59.3
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 1.1e-80 304.3 249 59.4
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 1.1e-80 304.3 280 56.4
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 1.9e-80 303.5 265 57.0
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.2e-79 300.8 271 56.1
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 1.6e-79 300.4 244 62.7
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 2.1e-79 300.1 254 63.0
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 4.6e-79 298.9 254 63.4
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 1.1e-77 294.3 265 57.0
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 1.9e-77 293.5 257 59.5
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 3.3e-77 292.7 258 57.8
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 5.7e-77 292.0 245 60.0
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 1.6e-76 290.4 244 59.0
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 3.7e-76 289.3 254 62.2
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 6.3e-76 288.5 259 57.1
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 1.8e-75 287.0 246 56.9
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 7.7e-74 281.6 263 59.3
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 3.8e-73 279.3 258 58.9
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 5.0e-73 278.9 243 58.8
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 2.5e-72 276.6 271 55.4
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 5.5e-72 275.4 234 61.5
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 1.2e-71 274.2 270 53.3
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 2.5e-69 266.5 274 51.1
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 3.3e-69 266.2 254 54.3
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 5.7e-69 265.4 252 57.5
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 9.7e-69 264.6 219 63.5
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.7e-68 263.8 396 39.1
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 2.2e-68 263.5 202 63.4
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 1.8e-67 260.4 249 54.6
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 1.7e-65 253.8 264 50.8
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 9.4e-64 248.1 201 62.7
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 1.2e-63 247.7 222 58.1
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.1e-61 241.1 196 61.7
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 1.1e-61 241.1 234 53.0
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 3.7e-60 236.1 245 48.6
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.2e-58 231.1 271 48.7
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.2e-58 231.1 271 48.7
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 1.0e-54 218.0 260 45.4
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 1.0e-54 218.0 258 50.4
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 1.8e-54 217.2 151 67.5
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 1.7e-52 210.7 209 52.2
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 2.6e-50 203.4 259 45.2
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 1.0e-46 191.4 162 58.6
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 5.7e-45 185.7 190 54.2
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 9.7e-45 184.9 172 55.2
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 9.7e-45 184.9 165 56.4
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 3.7e-44 183.0 129 65.9
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 4.1e-43 179.5 158 60.8
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 7.7e-42 175.3 216 45.4
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 5.0e-41 172.6 142 61.3
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 6.5e-41 172.2 134 66.4
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 8.5e-41 171.8 142 61.3
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 8.5e-41 171.8 147 59.9
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 7.2e-40 168.7 142 60.6
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 7.2e-40 168.7 142 60.6
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 3.4e-37 159.8 114 62.3
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 5.7e-37 159.1 118 64.4
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 2.2e-36 157.1 122 63.1
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 3.7e-36 156.4 123 64.2
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 3.8e-33 146.4 120 64.2
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 1.5e-32 144.4 294 35.4
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 3.0e-30 136.7 141 51.1
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 1.8e-27 127.5 88 64.8
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 1.3e-25 121.3 241 34.0
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 1.7e-25 120.9 123 52.8
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 2.3e-25 120.6 125 55.2
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 7.3e-24 115.5 97 60.8
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 6.1e-23 112.5 311 30.2
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 6.8e-22 109.0 76 67.1
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 9.8e-21 105.1 166 39.8
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 9.8e-21 105.1 108 53.7
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 1.4e-19 101.3 95 57.9
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 2.4e-19 100.5 105 46.7
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 3.5e-18 96.7 60 73.3
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.3e-17 94.0 76 55.3
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 2.5e-16 90.5 61 68.9
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 2.3e-09 67.4 71 47.9
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 5.6e-08 62.8 50 56.0
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 2.3e-06 57.4 33 75.8


User provided reference genes

Program Settings