Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g12730 Coffea canephora HOM05D002665 ORTHO05D002991 3.7e-68 261.9 186 100.0
CSS0011343 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 9.8e-21 104.4 199 48.7
CSS0018914 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 3.7e-20 102.4 199 48.7
Gorai.009G069200 Gossypium raimondii HOM05D002665 ORTHO05D002991 3.7e-20 102.4 175 44.0
Thecc.09G004300 Theobroma cacao HOM05D002665 ORTHO05D002991 3.7e-20 102.4 175 53.7
MSTRG.11823 Avicennia marina HOM05D002665 ORTHO05D002991 3.1e-19 99.4 181 46.4
Actinidia01290 Actinidia chinensis HOM05D002665 ORTHO05D002991 3.5e-18 95.9 180 37.8
Duzib168G2001 Durio zibethinus HOM05D002665 ORTHO05D002991 4.5e-18 95.5 175 45.1
Oeu002014.1 Olea europaea HOM05D002665 ORTHO05D002991 4.5e-18 95.5 175 46.3
MBI16_g34881_MAGBIO Magnolia biondii HOM05D002665 ORTHO05D002991 1.7e-17 93.6 178 39.9
Lsat_1_v5_gn_3_24601 Lactuca sativa HOM05D002665 ORTHO05D002991 3.9e-17 92.4 183 49.2
Gohir.A05G065951 Gossypium hirsutum HOM05D002665 ORTHO05D002991 1.1e-16 90.9 175 44.0
Potri.006G276900 Populus trichocarpa HOM05D002665 ORTHO05D002991 1.1e-16 90.9 184 42.4
PSO170G0184 Papaver somniferum HOM05D002665 ORTHO05D002991 1.9e-16 90.1 181 37.6
SGA_v2.0_scaffold193G40649 Striga asiatica HOM05D002665 ORTHO05D002991 1.9e-16 90.1 181 51.4
PSO144G0166 Papaver somniferum HOM05D002665 ORTHO05D002991 2.5e-16 89.7 186 36.0
Oeu059295.1 Olea europaea HOM05D002665 ORTHO05D002991 3.3e-16 89.4 181 50.8
Migut.A00460 Erythranthe guttata HOM05D002665 ORTHO05D002991 4.3e-16 89.0 176 52.8
Gohir.D05G068300 Gossypium hirsutum HOM05D002665 ORTHO05D002991 4.3e-16 89.0 175 48.6
CsaV3_2G031150 Cucumis sativus L. HOM05D002665 ORTHO05D002991 1.2e-15 87.4 178 36.5
Thecc.09G183600 Theobroma cacao HOM05D002665 ORTHO05D002991 1.2e-15 87.4 184 33.7
ATR0626G381 Amborella trichopoda HOM05D002665 ORTHO05D002991 2.8e-15 86.3 182 35.2
Nn2g12753 Nelumbo nucifera HOM05D002665 ORTHO05D002991 2.8e-15 86.3 174 44.3
CDE02G3722 Ceratophyllum demersum HOM05D003490 ORTHO05D004835 3.6e-15 85.9 178 36.5
Sc09g0007840 Simmondsia chinensis HOM05D002665 ORTHO05D002991 3.6e-15 85.9 186 38.7
Aqoxy7G02750 Aquilegia oxysepala HOM05D002665 ORTHO05D002991 4.7e-15 85.5 193 36.8
Lj8C424T3 Lonicera japonica HOM05D002665 ORTHO05D002991 4.7e-15 85.5 182 49.5
Lj8C430T1 Lonicera japonica HOM05D002665 ORTHO05D002991 4.7e-15 85.5 182 49.5
SGA_v2.0_scaffold27G11647 Striga asiatica HOM05D002665 ORTHO05D002991 4.7e-15 85.5 181 43.6
Ah.11g044010 Amaranthus hybridus HOM05D002665 ORTHO05D002991 6.1e-15 85.1 179 38.5
Hund19391 Selenicereus undatus HOM05D002665 ORTHO05D002991 6.1e-15 85.1 160 50.0
TAR625G0782 Trochodendron aralioides HOM05D002665 ORTHO05D002991 1.4e-14 84.0 85 62.4
unitig_747.g21906 Utricularia gibba HOM05D002665 ORTHO05D002991 2.3e-14 83.2 177 36.7
TAR383G0456 Trochodendron aralioides HOM05D002665 ORTHO05D002991 4.0e-14 82.4 180 52.2
TAR626G1487 Trochodendron aralioides HOM05D002665 ORTHO05D002991 5.2e-14 82.0 181 40.3
MBI13_g31541_MAGBIO Magnolia biondii HOM05D002665 ORTHO05D002991 1.2e-13 80.9 85 52.9
Migut.E01410 Erythranthe guttata HOM05D002665 ORTHO05D002991 1.5e-13 80.5 178 42.7
Actinidia22248 Actinidia chinensis HOM05D002665 ORTHO05D002991 2.0e-13 80.1 185 48.6
Phvul.009G104300 Phaseolus vulgaris HOM05D002665 ORTHO05D002991 2.6e-13 79.7 85 52.9
Lalb_Chr23g0269331 Lupinus albus HOM05D002665 ORTHO05D002991 4.4e-13 79.0 190 45.3
CDE06G0091 Ceratophyllum demersum HOM05D002665 ORTHO05D002991 7.5e-13 78.2 184 35.3
Solyc07g008970.4 Solanum lycopersicum HOM05D002665 ORTHO05D002991 1.7e-12 77.0 166 33.7
Lj7A750G48 Lonicera japonica HOM05D002665 ORTHO05D002991 8.3e-12 74.7 85 48.2
Sabra18G0001800 Salix brachista HOM05D002665 ORTHO05D002991 1.1e-11 74.3 175 42.9
Sabra06G0214600 Salix brachista HOM05D002665 ORTHO05D002991 4.1e-11 72.4 183 37.2
Sed0019725 Sechium edule HOM05D002665 ORTHO05D002991 4.1e-11 72.4 180 32.8
arahy.Tifrunner.gnm1.ann1.DQG69K Arachis hypogaea HOM05D002665 ORTHO05D002991 7.0e-11 71.6 85 47.1
Carub.0007s0922 Capsella rubella HOM05D002665 ORTHO05D002991 7.0e-11 71.6 177 46.9
Dinv26437 Davidia involucrata HOM05D002665 ORTHO05D002991 7.0e-11 71.6 139 37.4
BolC1t00751H Brassica oleracea HOM05D002665 ORTHO05D002991 3.5e-10 69.3 174 41.4
Duzib168G1639 Durio zibethinus HOM05D002665 ORTHO05D002991 3.5e-10 69.3 184 38.6
SalBow8G3867 Salvia bowleyana HOM05D002665 ORTHO05D002991 4.6e-10 68.9 185 31.4
HPP92_004710 Vanilla planifolia HOM05D002665 ORTHO05D002991 4.6e-10 68.9 85 41.2
BraA01t00645Z Brassica rapa HOM05D002665 ORTHO05D002991 7.8e-10 68.2 174 43.7
Zm00001eb102150 Zea mays HOM05D002665 ORTHO05D002991 7.8e-10 68.2 149 36.9
C01p07700 Brassica napus HOM05D002665 ORTHO05D002991 1.3e-09 67.4 174 46.0
DCAR_019798 Daucus carota HOM05D002665 ORTHO05D002991 1.7e-09 67.0 150 32.7
HanXRQChr17g0537281 Helianthus annuus HOM05D002665 ORTHO05D002991 1.7e-09 67.0 182 31.3
MSTRG.1740 Avicennia marina HOM05D002665 ORTHO05D002991 2.3e-09 66.6 80 48.8
BraA03t15106Z Brassica rapa HOM05D002665 ORTHO05D002991 3.0e-09 66.2 173 39.9
ECA246G1443 Erigeron canadensis HOM05D002665 ORTHO05D002991 3.0e-09 66.2 147 46.3
Thhalv10025225m.g Eutrema salsugineum HOM05D002665 ORTHO05D002991 3.9e-09 65.9 175 38.9
Lalb_Chr11g0064281 Lupinus albus HOM05D002665 ORTHO05D002991 5.0e-09 65.5 83 45.8
COL.COLO4_18617 Corchorus olitorius HOM05D002665 ORTHO05D002991 6.6e-09 65.1 137 54.7
arahy.Tifrunner.gnm1.ann1.D04E55 Arachis hypogaea HOM05D002665 ORTHO05D002991 8.6e-09 64.7 93 43.0
MELO3C003595.2 Cucumis melo HOM05D002665 ORTHO05D002991 8.6e-09 64.7 85 42.4
CsaV3_3G047330 Cucumis sativus L. HOM05D002665 ORTHO05D002991 8.6e-09 64.7 85 42.4
Nn8g40895 Nelumbo nucifera HOM05D002665 ORTHO05D002991 8.6e-09 64.7 178 45.5
BcaC09g51913 Brassica carinata HOM05D002665 ORTHO05D002991 1.1e-08 64.3 174 45.4
CARHR117640 Cardamine hirsuta HOM05D002665 ORTHO05D002991 1.5e-08 63.9 191 42.9
BcaNung05320 Brassica carinata HOM05D002665 ORTHO05D002991 1.9e-08 63.5 174 46.0
A01p06970 Brassica napus HOM05D002665 ORTHO05D002991 1.9e-08 63.5 174 45.4
VMungo1309G0855 Vigna mungo HOM05D002665 ORTHO05D002991 2.5e-08 63.2 85 45.9
MD08G1121400 Malus domestica HOM05D002665 ORTHO05D002991 3.3e-08 62.8 182 46.7
Hund03271 Selenicereus undatus HOM05D002665 ORTHO05D002991 3.3e-08 62.8 182 35.2
Lsat_1_v5_gn_5_59921 Lactuca sativa HOM05D002665 ORTHO05D002991 4.3e-08 62.4 157 49.0
Eucgr.C02115 Eucalyptus grandis HOM05D002665 ORTHO05D002991 5.6e-08 62.0 85 44.7
A03p60640 Brassica napus HOM05D002665 ORTHO05D002991 7.3e-08 61.6 154 40.9
ClCG08G012460 Citrullus lanatus HOM05D002665 ORTHO05D002991 9.5e-08 61.2 179 36.3
Nitab4.5_0006603g0020 Nicotiana tabacum HOM05D002665 ORTHO05D002991 9.5e-08 61.2 122 58.2
GSVIVG01035555001 Vitis vinifera HOM05D002665 ORTHO05D002991 9.5e-08 61.2 178 49.4
Hma1.2p1_0891F.1_g233110 Hydrangea macrophylla HOM05D002665 ORTHO05D002991 1.2e-07 60.8 178 44.4
BcaNung01529 Brassica carinata HOM05D002665 ORTHO05D002684 3.6e-07 59.3 180 42.2
Carub.0004s0377 Capsella rubella HOM05D002665 ORTHO05D002991 3.6e-07 59.3 176 41.5
Sp4g03440 Schrenkiella parvula HOM05D002665 ORTHO05D002991 4.7e-07 58.9 178 44.9
CANSAT11G0691 Cannabis sativa HOM05D002665 ORTHO05D002991 6.2e-07 58.5 179 30.7
Cpa.g.sc328.1 Carica papaya HOM05D002665 ORTHO05D002991 8.0e-07 58.2 85 44.7
C07p58550 Brassica napus HOM05D002665 ORTHO05D002991 1.4e-06 57.4 172 44.2
BolC7t46310H Brassica oleracea HOM05D002665 ORTHO05D002991 1.4e-06 57.4 172 44.2
AUR62020636 Chenopodium quinoa HOM05D002665 ORTHO05D002991 1.4e-06 57.4 185 30.8
ECA240G1424 Erigeron canadensis HOM05D002665 ORTHO05D002991 1.4e-06 57.4 141 53.2
Psat5g023080 Pisum sativum HOM05D002665 ORTHO05D002991 1.8e-06 57.0 83 50.6
CARHR239220 Cardamine hirsuta HOM05D002665 ORTHO05D002991 2.3e-06 56.6 177 45.2
CSS0015738 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 5.2e-06 55.5 182 35.7
Nitab4.5_0000919g0110 Nicotiana tabacum HOM05D002665 ORTHO05D002991 8.9e-06 54.7 139 34.5
Sed0013595 Sechium edule HOM05D002665 ORTHO05D002991 8.9e-06 54.7 85 37.6
HPP92_010794 Vanilla planifolia HOM05D002665 ORTHO05D002991 8.9e-06 54.7 141 27.7


User provided reference genes

Program Settings