Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 2.7e-39 164.9 82 100.0
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-35 152.9 79 97.5
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-35 152.5 79 96.2
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 3.1e-35 151.4 77 96.1
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 5.3e-35 150.6 79 92.4
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 5.3e-35 150.6 77 96.1
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 6.9e-35 150.2 77 96.1
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 6.9e-35 150.2 77 94.8
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 9.0e-35 149.8 77 94.8
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 1.2e-34 149.4 77 94.8
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.2e-34 149.4 77 93.5
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 1.5e-34 149.1 77 93.5
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 1.5e-34 149.1 76 96.1
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 2.0e-34 148.7 76 94.7
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 2.0e-34 148.7 77 93.5
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 2.0e-34 148.7 77 93.5
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.6e-34 148.3 77 93.5
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.6e-34 148.3 77 93.5
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 2.6e-34 148.3 77 94.8
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 2.6e-34 148.3 77 93.5
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 3.4e-34 147.9 77 92.2
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 3.4e-34 147.9 76 94.7
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 4.4e-34 147.5 76 93.4
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 4.4e-34 147.5 77 92.2
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 4.4e-34 147.5 77 92.2
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 5.8e-34 147.1 77 92.2
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 7.6e-34 146.7 77 92.2
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 7.6e-34 146.7 77 93.5
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 7.6e-34 146.7 77 90.9
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 7.6e-34 146.7 77 90.9
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 7.6e-34 146.7 76 93.4
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 7.6e-34 146.7 77 90.9
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 7.6e-34 146.7 77 92.2
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 9.9e-34 146.4 77 90.9
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.3e-33 146.0 77 89.6
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.3e-33 146.0 77 89.6
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 1.3e-33 146.0 77 92.2
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 1.3e-33 146.0 77 93.5
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 1.7e-33 145.6 77 90.9
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 1.7e-33 145.6 77 92.2
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 1.7e-33 145.6 77 92.2
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 1.7e-33 145.6 79 92.4
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.2e-33 145.2 77 90.9
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.2e-33 145.2 77 90.9
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 2.2e-33 145.2 77 90.9
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 2.2e-33 145.2 77 90.9
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 2.2e-33 145.2 77 90.9
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 2.2e-33 145.2 76 90.8
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 2.2e-33 145.2 77 92.2
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 2.2e-33 145.2 77 90.9
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 2.9e-33 144.8 77 89.6
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 2.9e-33 144.8 77 88.3
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 3.8e-33 144.4 77 90.9
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 4.9e-33 144.1 77 88.3
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 4.9e-33 144.1 77 88.3
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 4.9e-33 144.1 77 88.3
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 4.9e-33 144.1 77 88.3
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 4.9e-33 144.1 77 88.3
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 4.9e-33 144.1 77 88.3
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 4.9e-33 144.1 77 88.3
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 4.9e-33 144.1 77 88.3
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 4.9e-33 144.1 77 88.3
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 4.9e-33 144.1 77 88.3
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 4.9e-33 144.1 77 88.3
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 4.9e-33 144.1 77 88.3
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 4.9e-33 144.1 77 88.3
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 4.9e-33 144.1 77 88.3
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 6.4e-33 143.7 77 90.9
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 8.4e-33 143.3 77 89.6
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 8.4e-33 143.3 77 90.9
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 1.1e-32 142.9 77 90.9
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.4e-32 142.5 77 89.6
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.4e-32 142.5 77 88.3
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.9e-32 142.1 77 85.7
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 1.9e-32 142.1 77 85.7
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 1.9e-32 142.1 76 88.2
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 1.9e-32 142.1 77 92.2
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 1.9e-32 142.1 79 91.1
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 2.4e-32 141.7 77 87.0
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 2.4e-32 141.7 77 89.6
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.2e-32 141.4 77 88.3
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 3.2e-32 141.4 77 88.3
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 4.2e-32 141.0 77 88.3
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 4.2e-32 141.0 77 90.9
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 4.2e-32 141.0 77 88.3
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 5.4e-32 140.6 77 85.7
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 5.4e-32 140.6 77 90.9
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 5.4e-32 140.6 77 90.9
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 5.4e-32 140.6 77 90.9
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 5.4e-32 140.6 77 88.3
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 7.1e-32 140.2 76 88.2
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 9.3e-32 139.8 76 86.8
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 9.3e-32 139.8 76 86.8
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.7e-31 138.3 77 85.7
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 2.7e-31 138.3 77 85.7
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.5e-31 137.9 77 85.7
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.5e-31 137.9 77 85.7
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 3.5e-31 137.9 77 85.7
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 4.6e-31 137.5 77 85.7
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 4.6e-31 137.5 77 85.7
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 4.6e-31 137.5 77 85.7
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 7.8e-31 136.7 77 84.4
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 7.8e-31 136.7 77 84.4
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 3.9e-30 134.4 77 83.1
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 3.9e-30 134.4 77 83.1
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 5.1e-30 134.0 77 84.4
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 5.1e-30 134.0 77 84.4
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 1.1e-29 132.9 77 83.1
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 9.6e-29 129.8 77 79.2
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 2.8e-28 128.3 72 88.9
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 4.8e-28 127.5 66 93.9
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.4e-27 125.9 77 77.9
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 2.4e-27 125.2 76 75.0
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 3.1e-27 124.8 76 76.3
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 3.1e-27 124.8 72 84.7
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 4.0e-27 124.4 66 89.4
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 4.0e-27 124.4 77 77.9
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 5.3e-27 124.0 71 88.7
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 6.9e-27 123.6 66 86.4
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 6.9e-27 123.6 77 76.6
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 9.0e-27 123.2 72 83.3
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 9.0e-27 123.2 68 83.8
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 9.0e-27 123.2 66 90.9
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.5e-26 122.5 76 75.0
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 2.0e-26 122.1 68 83.8
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 2.6e-26 121.7 71 84.5
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 3.4e-26 121.3 70 82.9
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 3.4e-26 121.3 66 86.4
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 7.6e-26 120.2 71 87.3
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 7.6e-26 120.2 76 73.7
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 7.6e-26 120.2 68 85.3
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 7.6e-26 120.2 71 83.1
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 9.9e-26 119.8 66 84.8
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 9.9e-26 119.8 65 89.2
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 3.8e-25 117.9 67 83.6
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 2.1e-23 112.1 77 71.4
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 6.0e-23 110.5 73 69.9
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 7.9e-23 110.2 80 75.0
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 1.8e-19 99.0 71 66.2
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 4.5e-18 94.4 48 97.9
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 5.8e-18 94.0 47 91.5
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 1.9e-16 89.0 45 91.1
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.2e-16 88.2 51 80.4
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 4.2e-16 87.8 71 62.0
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 1.2e-15 86.3 43 95.3
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 1.2e-15 86.3 46 89.1
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-15 85.9 42 97.6
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.1e-15 85.5 68 58.8
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 2.4e-11 72.0 46 78.3
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 2.0e-10 68.9 50 74.0
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 5.8e-10 67.4 37 81.1
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 2.2e-09 65.5 34 91.2
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 4.2e-08 61.2 35 88.6
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 5.5e-08 60.8 42 78.6
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 5.5e-08 60.8 42 78.6
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 5.5e-08 60.8 31 96.8
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 9.3e-08 60.1 57 57.9
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 2.7e-07 58.5 30 96.7
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 6.1e-07 57.4 29 100.0


User provided reference genes

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