Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g12330 Coffea canephora HOM05D006085 ORTHO05D007559 9.2e-86 320.1 150 100.0
Hma1.2p1_0002F.1_g002100 Hydrangea macrophylla HOM05D006085 ORTHO05D007559 4.9e-55 218.0 178 60.7
GSVIVG01020577001 Vitis vinifera HOM05D006085 ORTHO05D007559 1.0e-52 210.3 173 59.5
Actinidia30466 Actinidia chinensis HOM05D006085 ORTHO05D007559 1.7e-52 209.5 173 59.0
CSS0044112 Camellia sinensis var. sinensis HOM05D006085 ORTHO05D007559 3.0e-52 208.8 173 57.2
Lj8C109T7 Lonicera japonica HOM05D006085 ORTHO05D007559 1.1e-51 206.8 173 58.4
vmacro12328 Vaccinium macrocarpon HOM05D006085 ORTHO05D007559 1.2e-50 203.4 175 57.1
TAR626G0071 Trochodendron aralioides HOM05D006085 ORTHO05D007559 1.1e-49 200.3 171 58.5
Sopen07g027790 Solanum pennellii HOM05D006085 ORTHO05D007559 2.4e-49 199.1 175 57.7
CAN.G209.32 Capsicum annuum HOM05D006085 ORTHO05D007559 3.1e-49 198.7 175 57.7
Rhsim06G0139100 Rhododendron simsii HOM05D006085 ORTHO05D007559 4.0e-49 198.4 169 57.4
PGSC0003DMG400032825 Solanum tuberosum HOM05D006085 ORTHO05D007559 5.2e-49 198.0 175 56.6
Nn1g04152 Nelumbo nucifera HOM05D006085 ORTHO05D007559 1.2e-48 196.8 173 55.5
FvH4_6g26520 Fragaria vesca HOM05D006085 ORTHO05D007559 1.5e-48 196.4 184 52.7
MSTRG.15247 Avicennia marina HOM05D006085 ORTHO05D007559 3.4e-48 195.3 156 58.3
Haze_13204 Corylus avellana HOM05D006085 ORTHO05D007559 3.4e-48 195.3 186 53.2
RcHm_v2.0_Chr2g0127641 Rosa chinensis HOM05D006085 ORTHO05D007559 3.4e-48 195.3 167 55.7
CiPaw.03G179300 Carya illinoinensis HOM05D006085 ORTHO05D007559 5.8e-48 194.5 173 57.8
MELO3C018706.2 Cucumis melo HOM05D006085 ORTHO05D007559 5.8e-48 194.5 173 53.8
Nitab4.5_0001752g0030 Nicotiana tabacum HOM05D006085 ORTHO05D007559 5.8e-48 194.5 160 59.4
TWI59G1154 Tripterygium wilfordii HOM05D006085 ORTHO05D007559 5.8e-48 194.5 173 54.9
MD17G1236100 Malus domestica HOM05D006085 ORTHO05D007559 7.6e-48 194.1 184 52.7
CsaV3_7G005870 Cucumis sativus L. HOM05D006085 ORTHO05D007559 9.9e-48 193.7 173 54.3
Solyc07g053820.3 Solanum lycopersicum HOM05D006085 ORTHO05D007559 1.3e-47 193.4 175 56.6
CANSAT64G0553 Cannabis sativa HOM05D006085 ORTHO05D007559 2.2e-47 192.6 173 53.2
FAN02G0764 Fragaria x ananassa HOM05D006085 ORTHO05D007559 2.2e-47 192.6 167 56.3
Lsat_1_v5_gn_4_66841 Lactuca sativa HOM05D006085 ORTHO05D007559 2.9e-47 192.2 173 55.5
Atru.chr6.2894 Acer truncatum HOM05D006085 ORTHO05D007559 3.8e-47 191.8 174 55.7
Prupe.3G189400 Prunus persica HOM05D006085 ORTHO05D007559 4.9e-47 191.4 165 55.2
Peaxi162Scf00981g00430 Petunia axillaris HOM05D006085 ORTHO05D007559 1.9e-46 189.5 197 51.8
Eucgr.A01834 Eucalyptus grandis HOM05D006085 ORTHO05D007559 4.2e-46 188.3 173 54.9
THA.LOC104804055 Tarenaya hassleriana HOM05D006085 ORTHO05D007559 4.2e-46 188.3 173 52.0
QL08p039688 Quercus lobata HOM05D006085 ORTHO05D007559 9.3e-46 187.2 172 53.5
Migut.M00167 Erythranthe guttata HOM05D006085 ORTHO05D007559 2.1e-45 186.0 151 59.6
HanXRQChr10g0284071 Helianthus annuus HOM05D006085 ORTHO05D007559 2.7e-45 185.7 173 54.9
PSO675G5281 Papaver somniferum HOM05D006085 ORTHO05D007559 1.3e-44 183.3 171 52.6
ECA234G4181 Erigeron canadensis HOM05D006085 ORTHO05D007559 2.3e-44 182.6 174 54.0
Ciclev10014891m.g Citrus clementina HOM05D006085 ORTHO05D007559 3.9e-44 181.8 173 52.6
Duzib052G1056 Durio zibethinus HOM05D006085 ORTHO05D007559 6.6e-44 181.0 173 52.0
Sc12g0003150 Simmondsia chinensis HOM05D006085 ORTHO05D007559 6.6e-44 181.0 175 53.1
PGR042G2089 Punica granatum HOM05D006085 ORTHO05D007559 1.1e-43 180.3 173 52.6
Glyma.12G116400 Glycine max HOM05D006085 ORTHO05D007559 1.5e-43 179.9 173 52.6
PSO541G4164 Papaver somniferum HOM05D006085 ORTHO05D007559 1.9e-43 179.5 171 51.5
Thecc.02G182800 Theobroma cacao HOM05D006085 ORTHO05D007559 3.3e-43 178.7 173 51.4
Glyma.06G290500 Glycine max HOM05D006085 ORTHO05D007559 4.3e-43 178.3 173 52.0
Lj3g0015664 Lotus japonicus HOM05D006085 ORTHO05D007559 5.6e-43 177.9 173 53.2
Lalb_Chr19g0135161 Lupinus albus HOM05D006085 ORTHO05D007559 7.3e-43 177.6 173 50.9
AT2G20635 Arabidopsis thaliana HOM05D006085 ORTHO05D007559 1.3e-42 176.8 173 50.3
Manes.13G147400 Manihot esculenta HOM05D006085 ORTHO05D007559 1.3e-42 176.8 173 50.3
AL3G53720 Arabidopsis lyrata HOM05D006085 ORTHO05D007559 2.8e-42 175.6 173 49.7
Hund01031 Selenicereus undatus HOM05D006085 ORTHO05D007559 2.8e-42 175.6 175 52.6
Psat7g168600 Pisum sativum HOM05D006085 ORTHO05D007559 6.2e-42 174.5 173 49.7
Cc05_g07480 Coffea canephora HOM05D006085 ORTHO05D007559 1.1e-41 173.7 86 96.5
Prupe.3G139600 Prunus persica HOM05D006085 ORTHO05D007559 3.1e-41 172.2 169 50.9
VMungo1127G1010 Vigna mungo HOM05D006085 ORTHO05D007559 3.1e-41 172.2 173 49.7
Ca_18934_v3 Cicer arietinum L. HOM05D006085 ORTHO05D007559 9.0e-41 170.6 173 49.7
Gohir.A13G055500 Gossypium hirsutum HOM05D006085 ORTHO05D007559 9.0e-41 170.6 173 51.4
Potri.007G139000 Populus trichocarpa HOM05D006085 ORTHO05D007559 9.0e-41 170.6 173 50.9
BolC8t51769H Brassica oleracea HOM05D006085 ORTHO05D007559 2.0e-40 169.5 152 53.9
Phvul.011G125900 Phaseolus vulgaris HOM05D006085 ORTHO05D007559 2.6e-40 169.1 175 49.7
BcaC07g41200 Brassica carinata HOM05D006085 ORTHO05D007559 3.4e-40 168.7 173 48.6
C08p42090 Brassica napus HOM05D006085 ORTHO05D007559 3.4e-40 168.7 173 48.6
Sp3g33890 Schrenkiella parvula HOM05D006085 ORTHO05D007559 4.5e-40 168.3 173 48.6
DCAR_021253 Daucus carota HOM05D006085 ORTHO05D007559 5.8e-40 167.9 237 40.5
SGA_v2.0_scaffold70G23511 Striga asiatica HOM05D006085 ORTHO05D007559 7.6e-40 167.5 143 55.9
Gohir.D13G066600 Gossypium hirsutum HOM05D006085 ORTHO05D007559 1.3e-39 166.8 173 50.3
CARHR111290 Cardamine hirsuta HOM05D006085 ORTHO05D007559 2.2e-39 166.0 173 48.0
AUR62038885 Chenopodium quinoa HOM05D006085 ORTHO05D007559 2.2e-39 166.0 160 50.6
Gorai.013G075800 Gossypium raimondii HOM05D006085 ORTHO05D007559 2.2e-39 166.0 173 50.3
ATR0217G009 Amborella trichopoda HOM05D006085 ORTHO05D007559 3.8e-39 165.2 171 47.4
BraA09t41263Z Brassica rapa HOM05D006085 ORTHO05D007559 4.9e-39 164.9 184 45.7
Carub.0003s3516 Capsella rubella HOM05D006085 ORTHO05D007559 6.4e-39 164.5 173 47.4
Aa31LG8G17530 Aethionema arabicum HOM05D006085 ORTHO05D007559 1.1e-38 163.7 173 45.7
AUR62038975 Chenopodium quinoa HOM05D006085 ORTHO05D007559 1.1e-38 163.7 161 50.3
BcaB08g34934 Brassica carinata HOM05D006085 ORTHO05D007559 1.4e-38 163.3 173 48.0
A09p58770 Brassica napus HOM05D006085 ORTHO05D007559 1.9e-38 162.9 184 45.1
Medtr4g078555 Medicago truncatula HOM05D006085 ORTHO05D007559 7.1e-38 161.0 173 48.0
Thhalv10001957m.g Eutrema salsugineum HOM05D006085 ORTHO05D007559 9.3e-38 160.6 173 46.2
Aqoxy1G02363 Aquilegia oxysepala HOM05D006085 ORTHO05D007559 2.1e-37 159.5 172 47.7
Ah.01g015320 Amaranthus hybridus HOM05D006085 ORTHO05D007559 1.8e-36 156.4 175 48.6
Os07g0508500 Oryza sativa ssp. japonica HOM05D006085 ORTHO05D007559 1.8e-36 156.4 170 47.1
arahy.Tifrunner.gnm1.ann1.C4PCKW Arachis hypogaea HOM05D006085 ORTHO05D007559 6.7e-36 154.5 199 41.2
Sabra07G0112000 Salix brachista HOM05D006085 ORTHO05D007559 6.7e-36 154.5 173 48.0
HPP92_014185 Vanilla planifolia HOM05D006085 ORTHO05D007559 1.9e-35 152.9 166 48.8
ClCG07G002490 Citrullus lanatus HOM05D006085 ORTHO05D007559 7.4e-35 151.0 150 51.3
MBI18_g34208_MAGBIO Magnolia biondii HOM05D006085 ORTHO05D007559 2.1e-34 149.4 149 53.0
Zm00001eb322380 Zea mays HOM05D006085 ORTHO05D007559 6.2e-34 147.9 173 45.1
Oeu036070.3 Olea europaea HOM05D006085 ORTHO05D007559 1.4e-33 146.7 131 54.2
TPR.G31028 Trifolium pratense HOM05D006085 ORTHO05D007559 1.8e-33 146.4 149 51.7
Manes.13G145916 Manihot esculenta HOM05D006085 ORTHO05D007559 4.0e-33 145.2 163 46.0
COL.COLO4_05950 Corchorus olitorius HOM05D006085 ORTHO05D007559 1.7e-31 139.8 150 49.3
Cpa.g.sc83.67 Carica papaya HOM05D006085 ORTHO05D007559 2.9e-31 139.0 150 46.0
arahy.Tifrunner.gnm1.ann1.RY71RI Arachis hypogaea HOM05D006085 ORTHO05D007559 3.8e-31 138.7 150 46.7
arahy.Tifrunner.gnm1.ann1.UWD03M Arachis hypogaea HOM05D006085 ORTHO05D007559 4.9e-31 138.3 147 50.3
arahy.Tifrunner.gnm1.ann1.9UNY9A Arachis hypogaea HOM05D006085 ORTHO05D007559 1.6e-29 133.3 146 45.9
unitig_21.g20425 Utricularia gibba HOM05D006085 ORTHO05D007559 1.6e-29 133.3 142 45.8
Nitab4.5_0000638g0110 Nicotiana tabacum HOM05D006085 ORTHO05D007559 3.5e-29 132.1 86 70.9
TPR.G23020 Trifolium pratense HOM05D006085 ORTHO05D007559 3.0e-28 129.0 127 52.0
Pp3c20_12130 Physcomitrium patens HOM05D006085 ORTHO05D007559 2.5e-27 125.9 172 43.0
AagrBONN_evm.TU.Sc2ySwM_228.5266 Anthoceros agrestis HOM05D006085 ORTHO05D007559 6.9e-25 117.9 148 41.9
Mapoly0009s0056 Marchantia polymorpha HOM05D006085 ORTHO05D007559 1.7e-23 113.2 147 41.5
Manes.13G145813 Manihot esculenta HOM05D006085 ORTHO05D007559 3.8e-23 112.1 111 46.8
Manes.13G145812 Manihot esculenta HOM05D006085 ORTHO05D007559 2.5e-22 109.4 110 46.4
Manes.13G145816 Manihot esculenta HOM05D006085 ORTHO05D007559 3.2e-22 109.0 118 44.9
Sed0017729 Sechium edule HOM05D006085 ORTHO05D007559 3.2e-22 109.0 110 47.3
CDE04G1826 Ceratophyllum demersum HOM05D006085 ORTHO05D007559 2.7e-21 105.9 111 46.8
Cc05_g07490 Coffea canephora HOM05D006085 ORTHO05D007559 3.0e-12 75.9 55 65.5
CBR_g48499 Chara braunii HOM05D006085 ORTHO05D007559 1.4e-09 67.0 177 29.9
Nitab4.5_0000638g0100 Nicotiana tabacum HOM05D006085 ORTHO05D007559 1.4e-06 57.0 49 49.0


User provided reference genes

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