Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 9.0e-171 603.6 325 100.0
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 1.7e-65 253.8 209 66.0
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 2.1e-63 246.9 209 65.6
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 3.6e-63 246.1 209 65.6
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 3.6e-63 246.1 293 50.9
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 1.4e-62 244.2 204 62.3
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 5.3e-62 242.3 273 52.0
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 1.2e-61 241.1 208 62.0
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 2.0e-61 240.4 207 62.3
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 3.4e-61 239.6 266 52.6
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 3.4e-61 239.6 204 61.8
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 4.5e-61 239.2 204 61.8
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 7.6e-61 238.4 204 61.3
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 1.3e-60 237.7 207 61.4
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 1.3e-60 237.7 211 64.0
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 2.2e-60 236.9 237 55.3
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 2.2e-60 236.9 211 64.0
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 3.8e-60 236.1 208 61.5
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 3.8e-60 236.1 323 47.7
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 4.9e-60 235.7 210 60.5
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 4.9e-60 235.7 207 60.9
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 4.9e-60 235.7 207 61.4
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 6.4e-60 235.3 264 51.9
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 8.4e-60 235.0 204 60.3
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 8.4e-60 235.0 204 61.3
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.4e-59 233.4 264 51.5
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.4e-59 233.4 206 60.7
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 2.4e-59 233.4 204 60.8
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 3.2e-59 233.0 208 62.5
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 7.1e-59 231.9 255 52.2
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 7.1e-59 231.9 207 59.9
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 9.3e-59 231.5 219 58.9
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 1.6e-58 230.7 204 61.8
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 3.5e-58 229.6 207 59.9
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 7.9e-58 228.4 222 57.2
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 1.3e-57 227.6 209 58.9
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 1.8e-57 227.3 206 58.3
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 6.7e-57 225.3 207 58.9
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 8.7e-57 224.9 210 59.5
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 8.7e-57 224.9 203 60.1
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 1.1e-56 224.6 262 50.0
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 1.5e-56 224.2 265 48.3
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 2.5e-56 223.4 280 48.2
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 3.3e-56 223.0 261 50.6
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 5.6e-56 222.2 298 48.3
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 7.4e-56 221.9 247 53.8
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 9.6e-56 221.5 278 48.6
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 1.6e-55 220.7 204 59.8
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 2.8e-55 219.9 210 57.1
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 4.8e-55 219.2 207 59.9
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 6.2e-55 218.8 217 55.8
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 8.1e-55 218.4 213 57.7
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 8.1e-55 218.4 205 58.5
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 8.1e-55 218.4 221 55.2
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.4e-54 217.6 206 59.2
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 2.4e-54 216.9 295 47.5
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 2.4e-54 216.9 204 57.4
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 3.1e-54 216.5 204 55.9
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.5e-53 214.2 219 56.2
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 2.0e-53 213.8 301 48.2
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 9.9e-53 211.5 206 55.8
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 9.9e-53 211.5 295 46.4
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 9.9e-53 211.5 204 57.8
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 1.3e-52 211.1 212 57.1
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 2.2e-52 210.3 211 57.8
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 2.9e-52 209.9 331 41.1
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 3.8e-52 209.5 204 57.4
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 6.4e-52 208.8 280 46.8
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 8.4e-52 208.4 215 54.0
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 1.1e-51 208.0 269 49.8
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.9e-51 207.2 223 55.6
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 2.4e-51 206.8 203 55.2
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 5.5e-51 205.7 205 54.6
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 9.3e-51 204.9 305 47.9
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.5e-50 203.0 205 58.5
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 4.6e-50 202.6 162 65.4
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 6.0e-50 202.2 214 53.3
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 1.3e-49 201.1 207 52.2
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 1.8e-49 200.7 205 53.2
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 1.8e-49 200.7 204 54.9
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 7.4e-48 195.3 171 63.7
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 2.8e-47 193.4 226 48.7
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 1.1e-46 191.4 205 51.7
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 3.4e-45 186.4 145 64.8
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.0e-44 184.9 208 48.1
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.0e-44 184.9 208 48.1
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 4.2e-43 179.5 165 58.2
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 7.9e-42 175.3 133 64.7
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 1.3e-41 174.5 260 42.7
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 1.9e-40 170.6 201 49.3
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 3.1e-38 163.3 208 44.7
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 6.9e-38 162.2 205 47.8
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 1.5e-37 161.0 219 48.4
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 1.5e-37 161.0 252 44.4
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.0e-36 158.3 170 54.1
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 5.0e-36 156.0 206 51.5
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 6.5e-36 155.6 245 40.8
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 1.9e-35 154.1 154 53.2
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 6.1e-34 149.1 144 59.0
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 2.3e-33 147.1 154 51.3
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 3.0e-33 146.7 154 51.3
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 3.0e-33 146.7 154 51.3
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 5.1e-33 146.0 209 43.5
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 1.6e-31 141.0 207 41.5
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.7e-31 139.8 324 35.5
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 4.8e-31 139.4 218 39.0
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.8e-30 137.5 177 44.1
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 5.0e-28 129.4 137 53.3
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.1e-27 128.3 203 43.3
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 1.4e-27 127.9 226 37.6
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 5.5e-27 125.9 145 50.3
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 2.7e-26 123.6 129 50.4
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 1.0e-25 121.7 90 64.4
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 2.6e-24 117.1 127 46.5
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 6.3e-23 112.5 214 36.4
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 3.4e-21 106.7 204 36.3
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 4.5e-21 106.3 205 41.0
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 7.7e-21 105.5 82 65.9
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.8e-20 103.2 210 38.6
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 8.5e-20 102.1 76 65.8
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 9.4e-19 98.6 90 55.6
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.9e-17 93.2 141 44.0
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 2.2e-15 87.4 63 69.8
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 1.8e-14 84.3 196 33.7
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.1e-14 83.6 116 42.2
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 4.1e-14 83.2 108 45.4
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 3.8e-12 76.6 170 37.6
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 1.5e-11 74.7 172 32.0
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 2.5e-11 73.9 141 34.8
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 9.4e-11 72.0 45 73.3
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 2.7e-10 70.5 169 32.0
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 1.8e-09 67.8 163 33.7
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 5.2e-09 66.2 172 31.4
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 3.3e-08 63.5 52 61.5
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 1.7e-07 61.2 56 57.1
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 4.8e-07 59.7 81 42.0
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 8.2e-07 58.9 87 40.2
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 5.3e-06 56.2 84 40.5
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 7.0e-06 55.8 84 39.3


User provided reference genes

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