Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g12310 Coffea canephora HOM05D004978 ORTHO05D005621 1.3e-49 199.5 110 100.0
Cc01_g19000 Coffea canephora HOM05D004978 ORTHO05D005621 7.1e-27 124.0 66 86.4
Manes.05G081900 Manihot esculenta HOM05D004978 ORTHO05D005621 6.4e-20 100.9 65 69.2
Glyma.10G029800 Glycine max HOM05D004978 ORTHO05D005621 1.1e-19 100.1 65 70.8
Lalb_Chr02g0142521 Lupinus albus HOM05D004978 ORTHO05D005621 1.1e-19 100.1 67 67.2
QL12p042266 Quercus lobata HOM05D004978 ORTHO05D005621 1.1e-19 100.1 67 67.2
Cpa.g.sc52.119 Carica papaya HOM05D004978 ORTHO05D005621 1.4e-19 99.8 65 69.2
DCAR_002701 Daucus carota HOM05D004978 ORTHO05D005621 2.4e-19 99.0 64 68.8
CSS0039116 Camellia sinensis var. sinensis HOM05D004978 ORTHO05D005621 3.2e-19 98.6 65 67.7
Hund09547 Selenicereus undatus HOM05D004978 ORTHO05D005621 4.1e-19 98.2 60 71.7
TWI75G1276 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 4.1e-19 98.2 65 67.7
Prupe.8G234700 Prunus persica HOM05D004978 ORTHO05D005621 5.4e-19 97.8 67 64.2
vmacro14887 Vaccinium macrocarpon HOM05D004978 ORTHO05D005621 5.4e-19 97.8 67 67.2
CANSAT25G0263 Cannabis sativa HOM05D004978 ORTHO05D005621 7.1e-19 97.4 65 66.2
Medtr1g071300 Medicago truncatula HOM05D004978 ORTHO05D005621 7.1e-19 97.4 65 70.8
GSVIVG01003121001 Vitis vinifera HOM05D004978 ORTHO05D005621 9.2e-19 97.1 65 66.2
CiPaw.07G086800 Carya illinoinensis HOM05D004978 ORTHO05D005621 1.2e-18 96.7 65 69.2
FAN27G2645 Fragaria x ananassa HOM05D004978 ORTHO05D005621 1.2e-18 96.7 67 62.7
FvH4_2g22940 Fragaria vesca HOM05D004978 ORTHO05D005621 1.6e-18 96.3 67 62.7
FAN20G1006 Fragaria x ananassa HOM05D004978 ORTHO05D005621 1.6e-18 96.3 67 62.7
FAN24G2655 Fragaria x ananassa HOM05D004978 ORTHO05D005621 1.6e-18 96.3 67 62.7
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 2.1e-18 95.9 65 64.6
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 2.1e-18 95.9 65 64.6
EL10Ac5g10492 Beta vulgaris HOM05D004978 ORTHO05D005621 2.7e-18 95.5 60 66.7
FAN15G0608 Fragaria x ananassa HOM05D004978 ORTHO05D005621 2.7e-18 95.5 60 68.3
arahy.Tifrunner.gnm1.ann1.54WUVN Arachis hypogaea HOM05D004978 ORTHO05D005621 3.5e-18 95.1 65 67.7
arahy.Tifrunner.gnm1.ann1.ZM38TH Arachis hypogaea HOM05D004978 ORTHO05D005621 3.5e-18 95.1 65 67.7
MD03G1258000 Malus domestica HOM05D004978 ORTHO05D005621 4.6e-18 94.7 65 64.6
ECA236G1829 Erigeron canadensis HOM05D004978 ORTHO05D005621 6.0e-18 94.4 56 75.0
Potri.005G215200 Populus trichocarpa HOM05D004978 ORTHO05D005621 6.0e-18 94.4 65 64.6
Dinv32884 Davidia involucrata HOM05D004978 ORTHO05D005621 7.8e-18 94.0 65 63.1
Migut.D00356 Erythranthe guttata HOM05D004978 ORTHO05D005621 7.8e-18 94.0 60 68.3
PSO832G2480 Papaver somniferum HOM05D004978 ORTHO05D005621 1.0e-17 93.6 66 63.6
AUR62011971 Chenopodium quinoa HOM05D004978 ORTHO05D005621 1.3e-17 93.2 60 66.7
COL.COLO4_09187 Corchorus olitorius HOM05D004978 ORTHO05D005621 1.3e-17 93.2 65 66.2
VMungo0720G1803 Vigna mungo HOM05D004978 ORTHO05D005621 1.3e-17 93.2 65 64.6
Rhsim01G0272000 Rhododendron simsii HOM05D004978 ORTHO05D005621 1.7e-17 92.8 65 63.1
Sed0003895 Sechium edule HOM05D004978 ORTHO05D005621 1.7e-17 92.8 65 66.2
BcaB01g04828 Brassica carinata HOM05D004978 ORTHO05D005621 2.3e-17 92.4 65 63.1
C03p11220 Brassica napus HOM05D004978 ORTHO05D005621 2.3e-17 92.4 65 63.1
BolC3t13593H Brassica oleracea HOM05D004978 ORTHO05D005621 2.3e-17 92.4 65 63.1
HanXRQChr04g0113941 Helianthus annuus HOM05D004978 ORTHO05D005621 2.3e-17 92.4 65 67.7
PSO210G1189 Papaver somniferum HOM05D004978 ORTHO05D005621 2.3e-17 92.4 66 62.1
Sabra05G0164500 Salix brachista HOM05D004978 ORTHO05D005621 2.3e-17 92.4 68 60.3
Sp6g24570 Schrenkiella parvula HOM05D004978 ORTHO05D005621 2.3e-17 92.4 65 63.1
BcaB01g04842 Brassica carinata HOM05D004978 ORTHO05D005621 3.0e-17 92.0 65 61.5
QL01p000805 Quercus lobata HOM05D004978 ORTHO05D005621 3.0e-17 92.0 60 66.7
Solyc09g065690.4 Solanum lycopersicum HOM05D004978 ORTHO05D005621 3.0e-17 92.0 56 69.6
Sopen09g027430 Solanum pennellii HOM05D004978 ORTHO05D005621 3.0e-17 92.0 56 69.6
SGA_v2.0_scaffold1G00534 Striga asiatica HOM05D004978 ORTHO05D005621 3.0e-17 92.0 60 66.7
Psat6g058480 Pisum sativum HOM05D004978 ORTHO05D005621 3.9e-17 91.7 65 67.7
Sed0016751 Sechium edule HOM05D004978 ORTHO05D005621 3.9e-17 91.7 65 64.6
Aa31LG9G14570 Aethionema arabicum HOM05D004978 ORTHO05D005621 5.1e-17 91.3 65 60.0
Ca_09727_v3 Cicer arietinum L. HOM05D004978 ORTHO05D005621 5.1e-17 91.3 65 64.6
Lj5g0010127 Lotus japonicus HOM05D004978 ORTHO05D005621 5.1e-17 91.3 65 64.6
MD11G1278700 Malus domestica HOM05D004978 ORTHO05D005621 5.1e-17 91.3 65 64.6
TAR636G0163 Trochodendron aralioides HOM05D004978 ORTHO05D005621 5.1e-17 91.3 65 64.6
Atru.chr5.1521 Acer truncatum HOM05D004978 ORTHO05D005621 6.6e-17 90.9 65 61.5
CsaV3_7G027890 Cucumis sativus L. HOM05D004978 ORTHO05D005621 6.6e-17 90.9 71 59.2
Phvul.007G175000 Phaseolus vulgaris HOM05D004978 ORTHO05D005621 6.6e-17 90.9 65 63.1
ClCG09G007410 Citrullus lanatus HOM05D004978 ORTHO05D005621 8.7e-17 90.5 71 59.2
Duzib133G0140 Durio zibethinus HOM05D004978 ORTHO05D005621 8.7e-17 90.5 65 63.1
Ciclev10019332m.g Citrus clementina HOM05D004978 ORTHO05D005621 1.1e-16 90.1 65 60.0
MELO3C015807.2 Cucumis melo HOM05D004978 ORTHO05D005621 1.1e-16 90.1 71 59.2
Nn1g02459 Nelumbo nucifera HOM05D004978 ORTHO05D005621 1.1e-16 90.1 62 64.5
CAN.G433.6 Capsicum annuum HOM05D004978 ORTHO05D005621 1.5e-16 89.7 56 67.9
Gohir.A08G063900 Gossypium hirsutum HOM05D004978 ORTHO05D005621 1.5e-16 89.7 65 61.5
Nitab4.5_0000459g0120 Nicotiana tabacum HOM05D004978 ORTHO05D005621 1.5e-16 89.7 56 69.6
Peaxi162Scf00259g00051 Petunia axillaris HOM05D004978 ORTHO05D005621 1.5e-16 89.7 56 67.9
PGSC0003DMG400019309 Solanum tuberosum HOM05D004978 ORTHO05D005621 1.5e-16 89.7 56 67.9
Thecc.01G271500 Theobroma cacao HOM05D004978 ORTHO05D005621 1.5e-16 89.7 65 61.5
Aqoxy5G00398 Aquilegia oxysepala HOM05D004978 ORTHO05D005621 1.9e-16 89.4 60 63.3
AT5G19840 Arabidopsis thaliana HOM05D004978 ORTHO05D005621 2.5e-16 89.0 65 60.0
Haze_04642 Corylus avellana HOM05D004978 ORTHO05D005621 2.5e-16 89.0 65 63.1
AL6G31360 Arabidopsis lyrata HOM05D004978 ORTHO05D005621 3.3e-16 88.6 65 61.5
CARHR193040 Cardamine hirsuta HOM05D004978 ORTHO05D005621 3.3e-16 88.6 65 61.5
Cfa006202 Carpinus fangiana HOM05D004978 ORTHO05D005621 3.3e-16 88.6 65 63.1
Nitab4.5_0004115g0020 Nicotiana tabacum HOM05D004978 ORTHO05D005621 3.3e-16 88.6 56 67.9
Gohir.D08G072400 Gossypium hirsutum HOM05D004978 ORTHO05D005621 4.3e-16 88.2 64 62.5
Gorai.004G076600 Gossypium raimondii HOM05D004978 ORTHO05D005621 4.3e-16 88.2 64 62.5
HPP92_027617 Vanilla planifolia HOM05D004978 ORTHO05D005621 5.6e-16 87.8 60 63.3
HPP92_022056 Vanilla planifolia HOM05D004978 ORTHO05D005621 7.3e-16 87.4 56 67.9
Thhalv10013262m.g Eutrema salsugineum HOM05D004978 ORTHO05D005621 9.6e-16 87.0 65 60.0
Lsat_1_v5_gn_8_93980 Lactuca sativa HOM05D004978 ORTHO05D005621 1.2e-15 86.7 56 67.9
Sc05g0001310 Simmondsia chinensis HOM05D004978 ORTHO05D005621 2.1e-15 85.9 65 60.0
PGR044G1133 Punica granatum HOM05D004978 ORTHO05D005621 2.8e-15 85.5 64 59.4
AUR62032283 Chenopodium quinoa HOM05D004978 ORTHO05D005621 3.6e-15 85.1 72 55.6
ATR0665G047 Amborella trichopoda HOM05D004978 ORTHO05D005621 4.7e-15 84.7 65 58.5
Eucgr.K03324 Eucalyptus grandis HOM05D004978 ORTHO05D005621 4.7e-15 84.7 64 56.2
Carub.0006s1818 Capsella rubella HOM05D004978 ORTHO05D005621 6.2e-15 84.3 56 69.6
RcHm_v2.0_Chr6g0289911 Rosa chinensis HOM05D004978 ORTHO05D005621 3.1e-14 82.0 54 66.7
SEGI_33448 Sequoiadendron giganteum HOM05D004978 ORTHO05D000001 4.4e-13 78.2 58 60.3
Zm00001eb370120 Zea mays HOM05D004978 ORTHO05D005621 5.8e-13 77.8 81 49.4
CDE02G4319 Ceratophyllum demersum HOM05D004978 ORTHO05D005621 1.3e-12 76.6 57 61.4
Ah.11g050220 Amaranthus hybridus HOM05D004978 ORTHO05D005621 1.7e-12 76.3 55 60.0
Pp3c26_13750 Physcomitrium patens HOM05D004978 ORTHO05D005621 2.4e-11 72.4 52 63.5
AagrBONN_evm.TU.Sc2ySwM_117.2029 Anthoceros agrestis HOM05D004978 ORTHO05D005621 2.7e-10 68.9 62 50.0
SMO367G0146 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 7.8e-10 67.4 61 49.2
Mapoly0003s0071 Marchantia polymorpha HOM05D004978 ORTHO05D005621 1.3e-09 66.6 55 50.9
RcHm_v2.0_Chr3g0456061 Rosa chinensis HOM05D004978 ORTHO05D005621 6.6e-09 64.3 34 76.5
RcHm_v2.0_Chr7g0198731 Rosa chinensis HOM05D004978 ORTHO05D005621 6.6e-09 64.3 34 76.5
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 1.1e-08 63.5 53 50.9
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 1.9e-08 62.8 57 49.1
Actinidia24924 Actinidia chinensis HOM05D004978 ORTHO05D005621 2.5e-08 62.4 36 72.2
Cre09.g407110 Chlamydomonas reinhardtii HOM05D004978 ORTHO05D005621 2.1e-07 59.3 49 51.0


User provided reference genes

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