Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 1.4e-84 316.2 162 100.0
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 1.7e-24 116.7 100 66.0
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 3.7e-24 115.5 73 82.2
Cc07_g01490 Coffea canephora HOM05D001087 ORTHO05D005406 5.9e-22 108.2 69 84.1
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 5.0e-21 105.1 73 76.7
CSS0025073 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D005406 2.6e-17 92.8 69 69.6
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 2.6e-17 92.8 74 66.2
Lj7A620G41 Lonicera japonica HOM05D001087 ORTHO05D005406 1.7e-16 90.1 62 71.0
Actinidia19533 Actinidia chinensis HOM05D001087 ORTHO05D005406 8.3e-16 87.8 69 65.2
CiPaw.03G079200 Carya illinoinensis HOM05D001087 ORTHO05D005406 8.3e-16 87.8 69 66.7
Nitab4.5_0002901g0070 Nicotiana tabacum HOM05D001087 ORTHO05D005406 8.3e-16 87.8 84 52.4
GSVIVG01032937001 Vitis vinifera HOM05D001087 ORTHO05D005406 1.1e-15 87.4 62 74.2
CAN.G473.167 Capsicum annuum HOM05D001087 ORTHO05D005406 1.4e-15 87.0 71 60.6
Ciclev10014134m.g Citrus clementina HOM05D001087 ORTHO05D005406 1.4e-15 87.0 62 72.6
EL10Ac6g13922 Beta vulgaris HOM05D001087 ORTHO05D005406 1.8e-15 86.7 69 65.2
Rhsim08G0036900 Rhododendron simsii HOM05D001087 ORTHO05D005406 1.8e-15 86.7 69 65.2
MELO3C014745.2 Cucumis melo HOM05D001087 ORTHO05D005406 2.4e-15 86.3 69 63.8
Duzib138G0185 Durio zibethinus HOM05D001087 ORTHO05D005406 2.4e-15 86.3 69 63.8
Atru.chr6.2747 Acer truncatum HOM05D001087 ORTHO05D005406 3.1e-15 85.9 69 65.2
COL.COLO4_13413 Corchorus olitorius HOM05D001087 ORTHO05D005406 3.1e-15 85.9 69 65.2
Nn4g22026 Nelumbo nucifera HOM05D001087 ORTHO05D005406 3.1e-15 85.9 69 63.8
QL02p063912 Quercus lobata HOM05D001087 ORTHO05D005406 3.1e-15 85.9 70 65.7
Thecc.04G053100 Theobroma cacao HOM05D001087 ORTHO05D005406 3.1e-15 85.9 69 65.2
Oeu062515.1 Olea europaea HOM05D001087 ORTHO05D005406 4.1e-15 85.5 69 63.8
CsaV3_3G020140 Cucumis sativus L. HOM05D001087 ORTHO05D005406 5.4e-15 85.1 69 63.8
DCAR_000957 Daucus carota HOM05D001087 ORTHO05D005406 7.0e-15 84.7 69 63.8
MD09G1000300 Malus domestica HOM05D001087 ORTHO05D005406 7.0e-15 84.7 69 63.8
PSO017G2606 Papaver somniferum HOM05D001087 ORTHO05D005406 7.0e-15 84.7 69 63.8
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 9.1e-15 84.3 76 59.2
Solyc02g094610.1 Solanum lycopersicum HOM05D001087 ORTHO05D005406 9.1e-15 84.3 69 59.4
Sopen02g039270 Solanum pennellii HOM05D001087 ORTHO05D005406 9.1e-15 84.3 69 59.4
ATR0582G201 Amborella trichopoda HOM05D001087 ORTHO05D005406 1.2e-14 84.0 69 59.4
arahy.Tifrunner.gnm1.ann1.65DI7F Arachis hypogaea HOM05D001087 ORTHO05D005406 1.2e-14 84.0 81 56.8
ClCG05G012380 Citrullus lanatus HOM05D001087 ORTHO05D005406 1.2e-14 84.0 69 62.3
Nitab4.5_0000519g0400 Nicotiana tabacum HOM05D001087 ORTHO05D005406 1.2e-14 84.0 70 57.1
RcHm_v2.0_Chr2g0176781 Rosa chinensis HOM05D001087 ORTHO05D005406 1.2e-14 84.0 69 60.9
PSO478G2418 Papaver somniferum HOM05D001087 ORTHO05D005406 1.6e-14 83.6 69 62.3
Hund04150 Selenicereus undatus HOM05D001087 ORTHO05D005406 1.6e-14 83.6 69 60.9
Ah.02g128690 Amaranthus hybridus HOM05D001087 ORTHO05D005406 2.0e-14 83.2 70 58.6
CANSAT64G1951 Cannabis sativa HOM05D001087 ORTHO05D005406 2.0e-14 83.2 69 66.7
AUR62017451 Chenopodium quinoa HOM05D001087 ORTHO05D005406 2.0e-14 83.2 69 62.3
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 2.0e-14 83.2 73 57.5
AUR62032520 Chenopodium quinoa HOM05D001087 ORTHO05D005406 3.5e-14 82.4 69 62.3
Lsat_1_v5_gn_3_103380 Lactuca sativa HOM05D001087 ORTHO05D005406 3.5e-14 82.4 69 60.9
QL02p063896 Quercus lobata HOM05D001087 ORTHO05D005406 3.5e-14 82.4 64 67.2
Gohir.D08G048400 Gossypium hirsutum HOM05D001087 ORTHO05D005406 4.5e-14 82.0 69 65.2
Gorai.004G047900 Gossypium raimondii HOM05D001087 ORTHO05D005406 4.5e-14 82.0 69 65.2
PGR042G1457 Punica granatum HOM05D001087 ORTHO05D005406 4.5e-14 82.0 69 63.8
SalBow4G1044 Salvia bowleyana HOM05D001087 ORTHO05D005406 4.5e-14 82.0 69 63.8
arahy.Tifrunner.gnm1.ann1.C4QHPC Arachis hypogaea HOM05D001087 ORTHO05D005406 5.9e-14 81.6 69 59.4
FAN27G2264 Fragaria x ananassa HOM05D001087 ORTHO05D005406 5.9e-14 81.6 69 58.0
Sc16g0004210 Simmondsia chinensis HOM05D001087 ORTHO05D005406 5.9e-14 81.6 69 59.4
TAR629G2385 Trochodendron aralioides HOM05D001087 ORTHO05D005406 5.9e-14 81.6 69 60.9
HPP92_021688 Vanilla planifolia HOM05D001087 ORTHO05D005406 5.9e-14 81.6 62 66.1
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 7.7e-14 81.3 74 58.1
Prupe.3G316100 Prunus persica HOM05D001087 ORTHO05D005406 7.7e-14 81.3 69 60.9
HPP92_021715 Vanilla planifolia HOM05D001087 ORTHO05D005406 7.7e-14 81.3 62 64.5
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.0e-13 80.9 73 57.5
Lalb_Chr14g0364241 Lupinus albus HOM05D001087 ORTHO05D005406 1.0e-13 80.9 69 59.4
SEGI_07298 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 1.0e-13 80.9 71 57.7
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.0e-13 80.9 66 62.1
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.3e-13 80.5 77 55.8
Gohir.A08G038200 Gossypium hirsutum HOM05D001087 ORTHO05D005406 1.3e-13 80.5 69 63.8
MBI07_g11062_MAGBIO Magnolia biondii HOM05D001087 ORTHO05D005406 1.3e-13 80.5 73 58.9
TWI32G0903 Tripterygium wilfordii HOM05D001087 ORTHO05D005406 1.3e-13 80.5 69 62.3
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 1.7e-13 80.1 66 60.6
FvH4_6g54490 Fragaria vesca HOM05D001087 ORTHO05D005406 1.7e-13 80.1 69 56.5
FAN14G5433 Fragaria x ananassa HOM05D001087 ORTHO05D005406 1.7e-13 80.1 69 56.5
Ca_08243_v3 Cicer arietinum L. HOM05D001087 ORTHO05D005406 2.2e-13 79.7 69 59.4
Psat0s4626g0080 Pisum sativum HOM05D001087 ORTHO05D005406 2.2e-13 79.7 69 58.0
TPR.G31052 Trifolium pratense HOM05D001087 ORTHO05D005406 2.2e-13 79.7 69 58.0
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 2.9e-13 79.3 73 56.2
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 2.9e-13 79.3 73 56.2
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.8e-13 79.0 67 59.7
Sed0004915 Sechium edule HOM05D001087 ORTHO05D005406 3.8e-13 79.0 69 59.4
Potri.014G141100 Populus trichocarpa HOM05D001087 ORTHO05D005406 5.0e-13 78.6 69 59.4
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 5.0e-13 78.6 76 57.9
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 5.0e-13 78.6 76 55.3
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 6.5e-13 78.2 79 54.4
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 6.5e-13 78.2 65 61.5
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 8.5e-13 77.8 66 59.1
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 8.5e-13 77.8 74 51.4
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 8.5e-13 77.8 79 53.2
Medtr7g084880 Medicago truncatula HOM05D001087 ORTHO05D005406 1.1e-12 77.4 69 56.5
Phvul.001G097600 Phaseolus vulgaris HOM05D001087 ORTHO05D005406 1.1e-12 77.4 69 58.0
VMungo1383G1594 Vigna mungo HOM05D001087 ORTHO05D005406 1.1e-12 77.4 69 58.0
HanXRQChr17g0550851 Helianthus annuus HOM05D001087 ORTHO05D005406 1.5e-12 77.0 62 66.1
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 1.5e-12 77.0 69 49.3
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 1.5e-12 77.0 69 53.6
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 1.5e-12 77.0 98 46.9
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.9e-12 76.6 66 59.1
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 1.9e-12 76.6 66 59.1
Lj1g0002000 Lotus japonicus HOM05D001087 ORTHO05D005406 1.9e-12 76.6 62 62.9
SGA_v2.0_scaffold44G16961 Striga asiatica HOM05D001087 ORTHO05D005406 1.9e-12 76.6 65 61.5
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 2.5e-12 76.3 70 57.1
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 2.5e-12 76.3 70 57.1
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 2.5e-12 76.3 73 50.7
Migut.F00007 Erythranthe guttata HOM05D001087 ORTHO05D005406 2.5e-12 76.3 69 56.5
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 2.5e-12 76.3 66 57.6
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 3.2e-12 75.9 73 52.1
Sabra14G0106400 Salix brachista HOM05D001087 ORTHO05D005406 3.2e-12 75.9 62 62.9
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 3.2e-12 75.9 65 60.0
Glyma.19G107500 Glycine max HOM05D001087 ORTHO05D005406 4.2e-12 75.5 69 55.1
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 5.5e-12 75.1 69 55.1
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 5.5e-12 75.1 66 56.1
Eucgr.H05015 Eucalyptus grandis HOM05D001087 ORTHO05D005406 5.5e-12 75.1 69 59.4
Manes.04G095500 Manihot esculenta HOM05D001087 ORTHO05D005406 5.5e-12 75.1 69 58.0
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 7.2e-12 74.7 73 56.2
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 7.2e-12 74.7 65 58.5
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 7.2e-12 74.7 66 57.6
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 9.5e-12 74.3 73 50.7
Glyma.16G044400 Glycine max HOM05D001087 ORTHO05D005406 1.2e-11 73.9 69 55.1
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.2e-11 73.9 73 50.7
Aqoxy3G01996 Aquilegia oxysepala HOM05D001087 ORTHO05D005406 1.6e-11 73.6 62 61.3
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 1.6e-11 73.6 82 52.4
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 1.6e-11 73.6 71 52.1
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 1.6e-11 73.6 66 56.1
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.1e-11 73.2 78 52.6
THA.LOC104805290 Tarenaya hassleriana HOM05D001087 ORTHO05D005406 2.1e-11 73.2 69 50.7
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 2.7e-11 72.8 73 47.9
MSTRG.3036 Avicennia marina HOM05D001087 ORTHO05D005406 3.6e-11 72.4 69 58.0
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 3.6e-11 72.4 67 53.7
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 3.6e-11 72.4 66 53.0
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 3.6e-11 72.4 65 55.4
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 4.7e-11 72.0 67 56.7
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 4.7e-11 72.0 67 56.7
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 4.7e-11 72.0 66 53.0
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 4.7e-11 72.0 73 47.9
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 6.1e-11 71.6 73 49.3
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 6.1e-11 71.6 73 49.3
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 6.1e-11 71.6 71 52.1
Sp1g11500 Schrenkiella parvula HOM05D001087 ORTHO05D005406 6.1e-11 71.6 69 53.6
BraA09t41703Z Brassica rapa HOM05D001087 ORTHO05D005406 8.0e-11 71.2 70 50.0
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 8.0e-11 71.2 66 54.5
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 8.0e-11 71.2 66 54.5
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.0e-10 70.9 78 51.3
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 1.0e-10 70.9 66 53.0
Thhalv10006676m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 1.0e-10 70.9 69 52.2
AL1G24570 Arabidopsis lyrata HOM05D001087 ORTHO05D005406 1.4e-10 70.5 69 52.2
AT1G12930 Arabidopsis thaliana HOM05D001087 ORTHO05D005406 1.4e-10 70.5 69 52.2
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.4e-10 70.5 65 56.9
ECA246G3450 Erigeron canadensis HOM05D001087 ORTHO05D005406 1.4e-10 70.5 62 59.7
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.4e-10 70.5 75 53.3
Aa31LG1G1850 Aethionema arabicum HOM05D001087 ORTHO05D005406 1.8e-10 70.1 69 50.7
Carub.0001s1270 Capsella rubella HOM05D001087 ORTHO05D005406 1.8e-10 70.1 69 50.7
CARHR013280 Cardamine hirsuta HOM05D001087 ORTHO05D005406 1.8e-10 70.1 69 50.7
SalBow6G3864 Salvia bowleyana HOM05D001087 ORTHO05D004028 1.8e-10 70.1 62 61.3
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.3e-10 69.7 78 50.0
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 2.3e-10 69.7 73 46.6
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.3e-10 69.7 90 45.6
Zm00001eb197740 Zea mays HOM05D001087 ORTHO05D005406 2.3e-10 69.7 70 47.1
A09p63520 Brassica napus HOM05D001087 ORTHO05D005406 3.0e-10 69.3 69 49.3
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.0e-10 69.3 78 50.0
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 3.0e-10 69.3 65 55.4
CDE05G0125 Ceratophyllum demersum HOM05D001087 ORTHO05D005406 4.0e-10 68.9 62 56.5
BcaB08g34240 Brassica carinata HOM05D001087 ORTHO05D005406 8.8e-10 67.8 69 50.7
C08p47020 Brassica napus HOM05D001087 ORTHO05D005406 8.8e-10 67.8 69 50.7
BolC8t52241H Brassica oleracea HOM05D001087 ORTHO05D005406 8.8e-10 67.8 69 50.7
Mapoly0055s0098 Marchantia polymorpha HOM05D001087 ORTHO05D005406 8.8e-10 67.8 70 50.0
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.6e-09 66.2 66 54.5
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 2.6e-09 66.2 66 45.5
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 3.4e-09 65.9 57 61.4
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 3.4e-09 65.9 71 46.5
A06p08730 Brassica napus HOM05D001087 ORTHO05D005406 4.4e-09 65.5 69 49.3
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 7.5e-09 64.7 65 50.8
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 7.5e-09 64.7 69 44.9
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 9.8e-09 64.3 86 40.7
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 1.3e-08 63.9 66 40.9
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 1.3e-08 63.9 67 52.2
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 1.7e-08 63.5 66 42.4
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.2e-08 63.2 66 53.0
Cpa.g.sc70.26 Carica papaya HOM05D001087 ORTHO05D005406 2.8e-08 62.8 81 46.9
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 3.7e-08 62.4 65 49.2
Pp3c10_7760 Physcomitrium patens HOM05D001087 ORTHO05D005406 3.7e-08 62.4 70 48.6
BolC5t29778H Brassica oleracea HOM05D001087 ORTHO05D005406 4.9e-08 62.0 62 56.5
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 6.3e-08 61.6 66 47.0
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 8.3e-08 61.2 67 43.3
C05p10320 Brassica napus HOM05D001087 ORTHO05D005406 1.4e-07 60.5 62 56.5
Pp3c14_8290 Physcomitrium patens HOM05D001087 ORTHO05D005406 1.8e-07 60.1 70 45.7
Pp3c14_8293 Physcomitrium patens HOM05D001087 ORTHO05D005406 1.8e-07 60.1 70 45.7
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 4.1e-07 58.9 48 66.7
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 7.0e-07 58.2 38 63.2
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 9.2e-07 57.8 65 46.2


User provided reference genes

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