Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 2.1e-150 535.8 300 100.0
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 2.7e-89 332.8 281 69.8
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 4.7e-89 332.0 277 65.0
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 9.7e-87 324.3 278 68.3
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 1.8e-85 320.1 278 68.7
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 4.1e-85 318.9 278 68.7
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 9.1e-85 317.8 281 68.3
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 2.5e-82 309.7 282 66.3
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 3.2e-82 309.3 281 66.9
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 2.6e-79 299.7 279 63.1
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 7.5e-79 298.1 272 62.5
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 7.5e-79 298.1 272 62.5
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 4.8e-78 295.4 277 61.4
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.1e-77 294.3 272 62.5
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 1.2e-76 290.8 281 62.3
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 1.2e-76 290.8 282 62.4
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 2.7e-76 289.7 280 60.4
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 1.0e-75 287.7 280 63.6
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 5.0e-75 285.4 280 62.9
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 1.1e-74 284.3 259 63.7
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 1.5e-74 283.9 278 61.9
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.5e-74 283.9 269 65.1
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 1.9e-74 283.5 277 60.6
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 3.2e-74 282.7 266 66.5
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 4.2e-74 282.3 280 62.1
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 9.4e-74 281.2 261 62.5
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 9.4e-74 281.2 280 59.3
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 4.7e-73 278.9 263 63.5
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 6.1e-73 278.5 267 60.3
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.0e-72 277.7 278 60.8
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 1.4e-72 277.3 282 59.6
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.8e-72 276.9 269 64.7
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.8e-72 276.9 277 61.7
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 8.8e-72 274.6 268 63.1
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 8.8e-72 274.6 280 60.4
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.5e-71 273.9 280 59.3
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 2.0e-71 273.5 269 60.6
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 4.8e-70 268.9 278 57.9
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 1.1e-69 267.7 269 58.0
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.4e-69 267.3 284 57.4
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.8e-69 266.9 267 58.4
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 2.4e-69 266.5 278 57.6
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 3.1e-69 266.2 266 62.8
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 3.1e-69 266.2 294 56.5
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 3.1e-69 266.2 283 58.7
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 7.0e-69 265.0 279 58.1
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 1.2e-68 264.2 254 60.2
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 1.2e-68 264.2 252 63.1
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 1.2e-68 264.2 260 60.8
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 3.5e-68 262.7 287 56.8
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 4.5e-68 262.3 268 60.1
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 4.5e-68 262.3 269 56.9
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.7e-67 260.4 268 59.0
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 1.7e-67 260.4 256 62.1
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 1.7e-67 260.4 275 55.6
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 5.0e-67 258.8 274 56.9
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 6.5e-67 258.5 264 60.6
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 8.5e-67 258.1 268 57.8
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 1.5e-66 257.3 269 58.4
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.5e-66 256.5 259 62.2
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.5e-66 256.5 259 62.2
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 5.5e-66 255.4 263 60.1
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 5.5e-66 255.4 385 47.8
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 5.5e-66 255.4 270 56.7
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 9.4e-66 254.6 260 58.8
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 4.7e-65 252.3 294 55.4
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 8.0e-65 251.5 272 56.2
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 1.4e-64 250.8 266 57.9
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 3.0e-64 249.6 263 57.8
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 4.0e-64 249.2 264 57.6
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 4.0e-64 249.2 277 55.6
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 9.8e-63 244.6 259 58.7
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 1.3e-62 244.2 258 58.9
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 1.3e-62 244.2 258 58.9
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 1.7e-62 243.8 241 63.9
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 4.9e-62 242.3 272 58.5
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 8.3e-62 241.5 260 59.2
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 3.1e-61 239.6 265 58.1
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 3.1e-61 239.6 266 56.4
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 5.4e-61 238.8 266 57.1
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 9.2e-61 238.0 266 58.3
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 1.6e-60 237.3 259 59.1
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 1.6e-60 237.3 283 54.4
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 2.7e-60 236.5 273 56.4
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 3.5e-60 236.1 263 59.7
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 5.9e-60 235.3 258 57.0
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 3.8e-59 232.6 275 57.1
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 5.0e-59 232.3 268 54.5
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 6.6e-59 231.9 264 56.4
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 1.5e-58 230.7 259 57.9
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 1.5e-58 230.7 294 51.4
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 1.9e-58 230.3 277 50.5
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 5.6e-58 228.8 267 55.4
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 2.8e-57 226.5 273 57.5
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 2.8e-57 226.5 285 50.5
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 1.0e-56 224.6 274 54.7
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 5.2e-56 222.2 233 61.8
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 1.2e-55 221.1 269 51.7
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 1.5e-55 220.7 235 53.2
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 2.0e-55 220.3 264 54.9
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 4.1e-53 212.6 197 67.5
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 4.1e-53 212.6 251 56.2
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 4.1e-53 212.6 254 51.6
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 1.2e-52 211.1 238 60.1
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 1.2e-52 211.1 263 51.7
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 3.5e-52 209.5 273 49.8
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 1.7e-51 207.2 259 55.2
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 3.9e-51 206.1 254 53.5
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.9e-50 203.8 255 54.9
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 1.2e-49 201.1 264 53.4
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 3.4e-47 193.0 283 50.9
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 7.5e-47 191.8 252 52.0
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 7.5e-47 191.8 254 53.1
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 7.5e-47 191.8 254 53.1
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 9.8e-47 191.4 258 52.7
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 1.1e-45 188.0 257 52.1
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.9e-45 187.2 252 52.0
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 2.0e-44 183.7 281 47.3
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 2.3e-43 180.3 243 50.2
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 5.8e-39 165.6 258 44.6
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 1.3e-38 164.5 255 46.3
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 1.7e-38 164.1 165 61.2
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 2.4e-37 160.2 184 54.9
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 5.4e-37 159.1 296 38.2
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 2.1e-36 157.1 260 43.8
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 7.8e-36 155.2 289 38.4
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 6.6e-35 152.1 232 42.2
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 8.6e-35 151.8 156 62.8
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 3.1e-32 143.3 264 39.8
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 2.7e-28 130.2 285 36.8
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 6.6e-27 125.6 258 38.0
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 8.1e-25 118.6 118 59.3
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 9.9e-23 111.7 195 43.6
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 7.3e-18 95.5 172 39.5
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 8.1e-17 92.0 134 50.0
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 1.2e-15 88.2 87 54.0
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 5.1e-11 72.8 87 46.0
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 5.1e-11 72.8 58 60.3
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 3.3e-10 70.1 68 64.7
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 5.3e-08 62.8 75 46.7
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.2e-07 61.6 118 32.2
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 8.4e-06 55.5 49 51.0


User provided reference genes

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