Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g10360 Coffea canephora HOM05D007598 ORTHO05D009632 5.4e-37 157.1 79 100.0
PGSC0003DMG400021093 Solanum tuberosum HOM05D007598 ORTHO05D009632 2.6e-23 111.7 79 74.7
arahy.Tifrunner.gnm1.ann1.A3G0A3 Arachis hypogaea HOM05D007598 ORTHO05D009632 1.1e-21 106.3 81 67.9
arahy.Tifrunner.gnm1.ann1.KTXA2U Arachis hypogaea HOM05D007598 ORTHO05D009632 1.9e-21 105.5 81 67.9
Dinv32243 Davidia involucrata HOM05D007598 ORTHO05D009632 4.2e-21 104.4 76 67.1
Nitab4.5_0006887g0010 Nicotiana tabacum HOM05D007598 ORTHO05D009632 5.4e-21 104.0 75 72.0
Sopen02g019560 Solanum pennellii HOM05D007598 ORTHO05D009632 5.4e-21 104.0 79 69.6
Solyc02g070470.1 Solanum lycopersicum HOM05D007598 ORTHO05D009632 9.3e-21 103.2 79 68.4
Psat1g188680 Pisum sativum HOM05D007598 ORTHO05D009632 1.6e-20 102.4 78 65.4
EL10Ac8g19673 Beta vulgaris HOM05D007598 ORTHO05D009632 2.7e-20 101.7 69 72.5
HanXRQChr15g0480881 Helianthus annuus HOM05D007598 ORTHO05D009632 2.7e-20 101.7 79 70.9
CiPaw.10G091200 Carya illinoinensis HOM05D007598 ORTHO05D009632 3.5e-20 101.3 90 61.1
Nitab4.5_0000420g0040 Nicotiana tabacum HOM05D007598 ORTHO05D009632 3.5e-20 101.3 75 73.3
Rhsim02G0159000 Rhododendron simsii HOM05D007598 ORTHO05D009632 6.0e-20 100.5 86 62.8
AUR62030196 Chenopodium quinoa HOM05D007598 ORTHO05D009632 1.0e-19 99.8 81 65.4
Actinidia39580 Actinidia chinensis HOM05D007598 ORTHO05D009632 1.3e-19 99.4 82 64.6
AUR62002748 Chenopodium quinoa HOM05D007598 ORTHO05D009632 1.3e-19 99.4 81 65.4
FvH4_3g05470 Fragaria vesca HOM05D007598 ORTHO05D009632 1.3e-19 99.4 61 82.0
FAN11G3574 Fragaria x ananassa HOM05D007598 ORTHO05D009632 1.3e-19 99.4 61 82.0
Thecc.06G149600 Theobroma cacao HOM05D007598 ORTHO05D009632 1.3e-19 99.4 82 64.6
MELO3C007128.2 Cucumis melo HOM05D007598 ORTHO05D009632 2.3e-19 98.6 87 63.2
DCAR_027909 Daucus carota HOM05D007598 ORTHO05D009632 2.3e-19 98.6 59 81.4
FAN16G2639 Fragaria x ananassa HOM05D007598 ORTHO05D009632 2.3e-19 98.6 61 82.0
FAN21G2813 Fragaria x ananassa HOM05D007598 ORTHO05D009632 2.3e-19 98.6 61 82.0
Phvul.006G165400 Phaseolus vulgaris HOM05D007598 ORTHO05D009632 2.3e-19 98.6 80 65.0
CAN.G702.32 Capsicum annuum HOM05D007598 ORTHO05D009632 3.0e-19 98.2 79 67.1
ClCG01G024670 Citrullus lanatus HOM05D007598 ORTHO05D009632 3.0e-19 98.2 86 65.1
Medtr2g019240 Medicago truncatula HOM05D007598 ORTHO05D009632 3.9e-19 97.8 61 77.0
HanXRQChr04g0114301 Helianthus annuus HOM05D007598 ORTHO05D009632 5.1e-19 97.4 59 83.1
MBI02_g15148_MAGBIO Magnolia biondii HOM05D007598 ORTHO05D009632 5.1e-19 97.4 68 70.6
Prupe.4G081500 Prunus persica HOM05D007598 ORTHO05D009632 6.6e-19 97.1 89 60.7
SalBow8G5536 Salvia bowleyana HOM05D007598 ORTHO05D009632 6.6e-19 97.1 66 75.8
CSS0035986 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 8.7e-19 96.7 81 64.2
CANSAT35G0825 Cannabis sativa HOM05D007598 ORTHO05D009632 8.7e-19 96.7 92 59.8
FAN25G0892 Fragaria x ananassa HOM05D007598 ORTHO05D009632 8.7e-19 96.7 61 80.3
Lalb_Chr20g0117881 Lupinus albus HOM05D007598 ORTHO05D009632 8.7e-19 96.7 65 72.3
Sed0007826 Sechium edule HOM05D007598 ORTHO05D009632 8.7e-19 96.7 82 64.6
THA.LOC104820651 Tarenaya hassleriana HOM05D007598 ORTHO05D009632 8.7e-19 96.7 84 61.9
CSS0006536 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 1.1e-18 96.3 80 65.0
Glyma.13G218700 Glycine max HOM05D007598 ORTHO05D009632 1.1e-18 96.3 79 65.8
Manes.17G070801 Manihot esculenta HOM05D007598 ORTHO05D009632 1.5e-18 95.9 92 62.0
Actinidia07703 Actinidia chinensis HOM05D007598 ORTHO05D009632 1.9e-18 95.5 84 66.7
CsaV3_6G051780 Cucumis sativus L. HOM05D007598 ORTHO05D009632 1.9e-18 95.5 87 62.1
Carub.0004s1626 Capsella rubella HOM05D007598 ORTHO05D009632 2.5e-18 95.1 85 58.8
Glyma.15G093500 Glycine max HOM05D007598 ORTHO05D009632 2.5e-18 95.1 80 63.8
Lsat_1_v5_gn_7_28481 Lactuca sativa HOM05D007598 ORTHO05D009632 2.5e-18 95.1 79 67.1
AT2G34585 Arabidopsis thaliana HOM05D007598 ORTHO05D009632 3.3e-18 94.7 83 60.2
Cpa.g.sc170.27 Carica papaya HOM05D007598 ORTHO05D009632 4.3e-18 94.4 86 61.6
Ca_00537_v3 Cicer arietinum L. HOM05D007598 ORTHO05D009632 4.3e-18 94.4 79 63.3
Sabra11G0066800 Salix brachista HOM05D007598 ORTHO05D009632 4.3e-18 94.4 91 59.3
CARHR128680 Cardamine hirsuta HOM05D007598 ORTHO05D009632 7.3e-18 93.6 84 57.1
BcaB06g28784 Brassica carinata HOM05D007598 ORTHO05D009632 9.6e-18 93.2 85 61.2
Cfa000936 Carpinus fangiana HOM05D007598 ORTHO05D009632 9.6e-18 93.2 88 61.4
Nn3g20182 Nelumbo nucifera HOM05D007598 ORTHO05D009632 1.3e-17 92.8 63 73.0
Potri.011G084300 Populus trichocarpa HOM05D007598 ORTHO05D009632 1.3e-17 92.8 59 78.0
Atru.chr10.1775 Acer truncatum HOM05D007598 ORTHO05D009632 1.6e-17 92.4 74 66.2
PGR042G1521 Punica granatum HOM05D007598 ORTHO05D009632 1.6e-17 92.4 78 67.9
MD05G1283100 Malus domestica HOM05D007598 ORTHO05D009632 2.1e-17 92.0 64 71.9
RcHm_v2.0_Chr5g0014281 Rosa chinensis HOM05D007598 ORTHO05D009632 2.1e-17 92.0 84 58.3
A04p26490 Brassica napus HOM05D007598 ORTHO05D009632 2.8e-17 91.7 86 60.5
C04p63910 Brassica napus HOM05D007598 ORTHO05D009632 2.8e-17 91.7 86 60.5
BolC4t27858H Brassica oleracea HOM05D007598 ORTHO05D009632 2.8e-17 91.7 86 60.5
BraA04t18153Z Brassica rapa HOM05D007598 ORTHO05D009632 2.8e-17 91.7 86 60.5
Thhalv10017600m.g Eutrema salsugineum HOM05D007598 ORTHO05D009632 2.8e-17 91.7 86 61.6
AL4G30560 Arabidopsis lyrata HOM05D007598 ORTHO05D009632 3.6e-17 91.3 83 59.0
Migut.M01992 Erythranthe guttata HOM05D007598 ORTHO05D009632 3.6e-17 91.3 79 64.6
Sp4g16850 Schrenkiella parvula HOM05D007598 ORTHO05D009632 3.6e-17 91.3 85 60.0
unitig_749.g13736 Utricularia gibba HOM05D007598 ORTHO05D009632 3.6e-17 91.3 66 71.2
Gohir.D10G042400 Gossypium hirsutum HOM05D007598 ORTHO05D009632 4.8e-17 90.9 68 70.6
Lj6g0001552 Lotus japonicus HOM05D007598 ORTHO05D009632 4.8e-17 90.9 78 61.5
Aqoxy7G00246 Aquilegia oxysepala HOM05D007598 ORTHO05D009632 6.2e-17 90.5 59 69.5
Migut.M00903 Erythranthe guttata HOM05D007598 ORTHO05D009632 8.1e-17 90.1 79 63.3
Nitab4.5_0002744g0030 Nicotiana tabacum HOM05D007598 ORTHO05D009632 8.1e-17 90.1 75 62.7
QL05p057697 Quercus lobata HOM05D007598 ORTHO05D009632 8.1e-17 90.1 60 78.3
Duzib235G0096 Durio zibethinus HOM05D007598 ORTHO05D009632 1.1e-16 89.7 87 58.6
Aa31LG10G6810 Aethionema arabicum HOM05D007598 ORTHO05D009632 1.4e-16 89.4 85 57.6
MD10G1261400 Malus domestica HOM05D007598 ORTHO05D009632 1.4e-16 89.4 62 69.4
Ah.14g086510 Amaranthus hybridus HOM05D007598 ORTHO05D009632 3.1e-16 88.2 73 63.0
TAR626G0451 Trochodendron aralioides HOM05D007598 ORTHO05D009632 3.1e-16 88.2 57 77.2
ECA236G0778 Erigeron canadensis HOM05D007598 ORTHO05D009632 6.9e-16 87.0 46 87.0
Sc05g0006160 Simmondsia chinensis HOM05D007598 ORTHO05D009632 1.5e-15 85.9 59 66.1
Ciclev10017916m.g Citrus clementina HOM05D007598 ORTHO05D009632 2.0e-15 85.5 77 61.0
Rhsim13G0114100 Rhododendron simsii HOM05D007598 ORTHO05D009632 2.0e-15 85.5 76 59.2
COL.COLO4_31062 Corchorus olitorius HOM05D007598 ORTHO05D009632 5.8e-15 84.0 46 84.8
PGSC0003DMG400012092 Solanum tuberosum HOM05D007598 ORTHO05D009632 5.8e-15 84.0 53 77.4
TWI53G0871 Tripterygium wilfordii HOM05D007598 ORTHO05D009632 5.8e-15 84.0 86 53.5
PSO541G2526 Papaver somniferum HOM05D007598 ORTHO05D009632 7.6e-15 83.6 84 53.6
ATR1098G093 Amborella trichopoda HOM05D007598 ORTHO05D009632 6.4e-14 80.5 71 60.6
HPP92_000988 Vanilla planifolia HOM05D007598 ORTHO05D009632 1.4e-13 79.3 47 76.6
Os07g0154300 Oryza sativa ssp. japonica HOM05D007598 ORTHO05D009632 3.5e-12 74.7 59 62.7
Zm00001eb117510 Zea mays HOM05D007598 ORTHO05D009632 6.0e-12 73.9 79 53.2
SEGI_36626 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 1.0e-11 73.2 48 68.8
Mapoly0055s0099 Marchantia polymorpha HOM05D007598 ORTHO05D009632 5.6e-10 67.4 48 62.5
Pp3c14_11250 Physcomitrium patens HOM05D007598 ORTHO05D009632 9.0e-08 60.1 72 41.7
Actinidia16706 Actinidia chinensis HOM05D000667 ORTHO05D004096 1.5e-07 59.3 57 59.6
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 1.5e-07 59.3 53 49.1
SEGI_00564 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 3.4e-07 58.2 76 42.1


User provided reference genes

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