Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 1.8e-170 602.4 296 100.0
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 2.3e-104 382.9 331 64.4
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 2.5e-103 379.4 309 63.8
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 1.1e-101 374.0 297 64.6
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 1.8e-101 373.2 297 64.3
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 1.2e-100 370.5 294 66.7
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 8.4e-99 364.4 309 62.8
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 4.1e-98 362.1 296 63.2
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 2.1e-97 359.8 327 60.2
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 2.1e-97 359.8 333 59.5
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 2.3e-96 356.3 333 59.5
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 3.0e-96 355.9 313 60.7
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 3.0e-96 355.9 274 65.3
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 3.3e-95 352.4 316 59.2
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 4.3e-95 352.1 296 62.5
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 5.6e-95 351.7 304 61.5
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 2.1e-94 349.7 307 63.2
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 6.2e-94 348.2 273 67.0
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 2.4e-93 346.3 293 61.8
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 2.4e-93 346.3 300 62.0
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 4.0e-93 345.5 273 66.3
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 5.2e-93 345.1 300 61.3
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 8.9e-93 344.4 292 61.6
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 1.2e-92 344.0 301 61.8
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 2.6e-92 342.8 300 60.0
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 3.4e-92 342.4 293 60.8
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 5.8e-92 341.7 300 60.0
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 5.8e-92 341.7 295 61.4
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 7.6e-92 341.3 305 60.3
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 9.9e-92 340.9 330 57.9
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 9.9e-92 340.9 294 63.9
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 3.8e-91 339.0 300 61.3
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 6.4e-91 338.2 300 62.3
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.1e-90 337.4 300 59.3
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 1.4e-90 337.0 284 62.7
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 2.4e-90 336.3 292 59.9
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 4.2e-90 335.5 300 59.7
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 5.4e-90 335.1 300 59.0
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 1.6e-89 333.6 294 58.8
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 1.6e-89 333.6 299 59.5
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 2.1e-89 333.2 300 58.7
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 2.1e-89 333.2 301 60.8
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 2.7e-89 332.8 293 59.4
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 6.0e-89 331.6 292 59.9
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 7.8e-89 331.3 296 59.1
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 7.8e-89 331.3 300 58.7
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 7.8e-89 331.3 310 59.4
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 1.0e-88 330.9 305 58.0
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 2.3e-88 329.7 298 59.4
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 3.0e-88 329.3 274 62.8
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 3.0e-88 329.3 274 63.9
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 5.1e-88 328.6 297 58.9
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 5.1e-88 328.6 298 59.1
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 8.7e-88 327.8 340 55.9
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.1e-87 327.4 299 57.5
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 1.5e-87 327.0 322 54.7
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 2.5e-87 326.2 308 57.8
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 2.5e-87 326.2 271 62.4
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 3.3e-87 325.9 300 59.7
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 7.3e-87 324.7 224 72.3
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 7.3e-87 324.7 300 58.0
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 2.1e-86 323.2 300 57.3
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 6.2e-86 321.6 225 72.0
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 6.2e-86 321.6 225 72.0
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 8.1e-86 321.2 286 60.8
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 1.1e-85 320.9 308 56.8
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 1.1e-85 320.9 227 69.6
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 1.8e-85 320.1 225 72.0
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 1.8e-85 320.1 225 72.0
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 5.3e-85 318.5 294 57.5
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 1.5e-84 317.0 219 71.7
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 2.6e-84 316.2 215 72.6
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 4.5e-84 315.5 312 56.1
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 5.8e-84 315.1 287 59.2
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 1.7e-83 313.5 298 56.7
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 2.2e-83 313.2 254 66.9
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 2.9e-83 312.8 227 70.5
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 3.8e-83 312.4 271 60.5
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 4.9e-83 312.0 224 70.5
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 6.4e-83 311.6 312 55.1
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 1.1e-82 310.8 212 74.1
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 1.4e-82 310.5 224 70.5
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.9e-82 310.1 303 55.4
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 1.9e-82 310.1 220 71.4
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 1.9e-82 310.1 298 56.0
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 2.4e-82 309.7 217 70.5
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 5.4e-82 308.5 239 68.2
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 7.1e-82 308.1 213 74.2
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 7.1e-82 308.1 228 68.0
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 9.3e-82 307.8 244 66.0
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 1.6e-81 307.0 213 72.8
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 4.6e-81 305.4 296 56.4
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 6.0e-81 305.1 217 68.7
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 2.3e-80 303.1 224 69.6
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 2.3e-80 303.1 232 64.7
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 1.5e-79 300.4 224 68.3
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.5e-79 300.4 203 73.4
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 4.3e-79 298.9 240 64.6
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 7.4e-79 298.1 335 50.4
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 8.1e-78 294.7 273 59.0
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 1.8e-77 293.5 208 69.2
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 1.5e-76 290.4 312 55.8
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 7.1e-74 281.6 244 59.4
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 2.7e-73 279.6 175 78.3
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 7.9e-73 278.1 197 69.5
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 4.3e-71 272.3 257 58.0
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 1.1e-69 267.7 179 74.3
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 5.3e-69 265.4 193 68.9
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 1.5e-68 263.8 238 59.7
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 2.0e-68 263.5 289 51.9
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 2.9e-67 259.6 195 66.2
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 6.5e-67 258.5 191 64.9
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 4.2e-66 255.8 285 51.6
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 2.1e-65 253.4 229 58.5
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 5.7e-63 245.4 195 61.5
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 7.4e-63 245.0 190 60.5
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.6e-57 227.3 212 53.8
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 5.0e-51 205.7 152 69.1
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 5.9e-44 182.2 131 64.1
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 3.2e-42 176.4 274 42.3
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 7.2e-42 175.3 207 47.8
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 5.0e-35 152.5 143 58.7
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 1.0e-27 128.3 94 68.1
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 3.7e-22 109.8 69 75.4
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 4.8e-22 109.4 79 67.1
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 3.1e-21 106.7 296 30.7
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 5.9e-12 75.9 84 47.6
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 1.0e-11 75.1 47 74.5
SEGI_34336 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 5.7e-07 59.3 71 46.5


User provided reference genes

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