Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g09850 Coffea canephora HOM05D006537 ORTHO05D008186 6.8e-134 480.7 250 100.0
CSS0005792 Camellia sinensis var. sinensis HOM05D006537 ORTHO05D008186 3.0e-113 412.1 250 83.2
Dinv22722 Davidia involucrata HOM05D006537 ORTHO05D008186 1.1e-112 410.2 249 82.3
TWI63G0033 Tripterygium wilfordii HOM05D006537 ORTHO05D008186 2.5e-112 409.1 249 80.7
MD04G1039500 Malus domestica HOM05D006537 ORTHO05D008186 6.2e-111 404.4 249 80.7
GSVIVG01010746001 Vitis vinifera HOM05D006537 ORTHO05D008186 3.1e-110 402.1 249 79.1
Solyc06g073410.3 Solanum lycopersicum HOM05D006537 ORTHO05D008186 8.9e-110 400.6 249 79.5
Sopen06g029790 Solanum pennellii HOM05D006537 ORTHO05D008186 8.9e-110 400.6 249 79.5
Potri.007G127400 Populus trichocarpa HOM05D006537 ORTHO05D008186 1.2e-109 400.2 247 81.0
PGSC0003DMG400027008 Solanum tuberosum HOM05D006537 ORTHO05D008186 1.5e-109 399.8 249 79.5
Prupe.1G190300 Prunus persica HOM05D006537 ORTHO05D008186 2.6e-109 399.1 249 79.5
Actinidia35970 Actinidia chinensis HOM05D006537 ORTHO05D008186 7.5e-109 397.5 249 81.1
Peaxi162Scf00375g00618 Petunia axillaris HOM05D006537 ORTHO05D008186 1.3e-108 396.7 249 78.7
Atru.chr3.1537 Acer truncatum HOM05D006537 ORTHO05D008186 4.9e-108 394.8 249 79.1
Nitab4.5_0004579g0020 Nicotiana tabacum HOM05D006537 ORTHO05D008186 4.9e-108 394.8 249 78.3
Ciclev10021930m.g Citrus clementina HOM05D006537 ORTHO05D008186 6.4e-108 394.4 246 80.5
CiPaw.01G101300 Carya illinoinensis HOM05D006537 ORTHO05D008186 1.9e-107 392.9 249 79.1
Thecc.04G185300 Theobroma cacao HOM05D006537 ORTHO05D008186 1.9e-107 392.9 249 77.1
Rhsim09G0028500 Rhododendron simsii HOM05D006537 ORTHO05D008186 2.4e-107 392.5 261 77.0
Gohir.D02G016700 Gossypium hirsutum HOM05D006537 ORTHO05D008186 4.1e-107 391.7 249 75.9
Haze_01534 Corylus avellana HOM05D006537 ORTHO05D008186 7.0e-107 391.0 247 79.4
FvH4_4g11160 Fragaria vesca HOM05D006537 ORTHO05D008186 9.2e-107 390.6 249 75.9
TAR633G2589 Trochodendron aralioides HOM05D006537 ORTHO05D008186 1.2e-106 390.2 249 78.7
AL4G26710 Arabidopsis lyrata HOM05D006537 ORTHO05D008186 2.7e-106 389.0 249 75.9
AT2G31440 Arabidopsis thaliana HOM05D006537 ORTHO05D008186 2.7e-106 389.0 249 75.5
Gohir.A02G015200 Gossypium hirsutum HOM05D006537 ORTHO05D008186 4.6e-106 388.3 249 75.1
Gorai.005G020200 Gossypium raimondii HOM05D006537 ORTHO05D008186 4.6e-106 388.3 249 75.1
Duzib212G0958 Durio zibethinus HOM05D006537 ORTHO05D008186 6.0e-106 387.9 249 75.5
QL10p048350 Quercus lobata HOM05D006537 ORTHO05D008186 7.8e-106 387.5 248 75.8
Carub.0004s1277 Capsella rubella HOM05D006537 ORTHO05D008186 1.3e-105 386.7 249 75.1
Oeu011639.1 Olea europaea HOM05D006537 ORTHO05D008186 1.3e-105 386.7 249 79.9
Sp4g13920 Schrenkiella parvula HOM05D006537 ORTHO05D008186 3.9e-105 385.2 249 75.1
Actinidia34608 Actinidia chinensis HOM05D006537 ORTHO05D008186 6.6e-105 384.4 249 78.3
A03p17600 Brassica napus HOM05D006537 ORTHO05D008186 6.6e-105 384.4 249 75.9
BraA03t11027Z Brassica rapa HOM05D006537 ORTHO05D008186 6.6e-105 384.4 249 75.9
BcaC01g05952 Brassica carinata HOM05D006537 ORTHO05D008186 8.6e-105 384.0 249 75.5
C03p20710 Brassica napus HOM05D006537 ORTHO05D008186 8.6e-105 384.0 249 75.5
BolC3t14452H Brassica oleracea HOM05D006537 ORTHO05D008186 8.6e-105 384.0 249 75.5
Thhalv10017140m.g Eutrema salsugineum HOM05D006537 ORTHO05D008186 1.5e-104 383.3 249 76.7
AUR62015408 Chenopodium quinoa HOM05D006537 ORTHO05D008186 1.9e-104 382.9 249 75.5
Eucgr.A00074 Eucalyptus grandis HOM05D006537 ORTHO05D008186 2.5e-104 382.5 246 76.8
Ca_20779_v3 Cicer arietinum L. HOM05D006537 ORTHO05D008186 3.3e-104 382.1 249 75.9
Duzib268G1074 Durio zibethinus HOM05D006537 ORTHO05D008186 3.3e-104 382.1 249 74.3
Aqoxy2G04100 Aquilegia oxysepala HOM05D006537 ORTHO05D008186 7.3e-104 380.9 249 76.3
Eucgr.A00271 Eucalyptus grandis HOM05D006537 ORTHO05D008186 7.3e-104 380.9 246 76.8
Lj3g0010197 Lotus japonicus HOM05D006537 ORTHO05D008186 1.2e-103 380.2 249 74.3
HanXRQChr14g0433111 Helianthus annuus HOM05D006537 ORTHO05D008186 1.6e-103 379.8 249 76.3
arahy.Tifrunner.gnm1.ann1.RQ8JR0 Arachis hypogaea HOM05D006537 ORTHO05D008186 2.1e-103 379.4 249 75.1
arahy.Tifrunner.gnm1.ann1.W0CVEC Arachis hypogaea HOM05D006537 ORTHO05D008186 2.1e-103 379.4 249 75.1
PSO675G9308 Papaver somniferum HOM05D006537 ORTHO05D008186 2.8e-103 379.0 249 75.5
SGA_v2.0_scaffold74G24571 Striga asiatica HOM05D006537 ORTHO05D008186 3.6e-103 378.6 249 75.1
PSO732G0008 Papaver somniferum HOM05D006537 ORTHO05D008186 4.7e-103 378.3 249 75.1
Psat7g214000 Pisum sativum HOM05D006537 ORTHO05D008186 6.2e-103 377.9 249 75.5
Migut.C00288 Erythranthe guttata HOM05D006537 ORTHO05D008186 1.1e-102 377.1 249 76.3
ClCG08G004470 Citrullus lanatus HOM05D006537 ORTHO05D008186 1.8e-102 376.3 249 73.1
Medtr4g067050 Medicago truncatula HOM05D006537 ORTHO05D008186 1.8e-102 376.3 249 74.3
BcaB01g04045 Brassica carinata HOM05D006537 ORTHO05D008186 2.3e-102 375.9 249 75.1
MELO3C011641.2 Cucumis melo HOM05D006537 ORTHO05D008186 2.3e-102 375.9 249 73.5
CARHR125090 Cardamine hirsuta HOM05D006537 ORTHO05D008186 4.0e-102 375.2 249 73.9
CANSAT78G1337 Cannabis sativa HOM05D006537 ORTHO05D008186 6.8e-102 374.4 249 75.5
TPR.G34202 Trifolium pratense HOM05D006537 ORTHO05D008186 6.8e-102 374.4 249 73.9
CsaV3_6G003840 Cucumis sativus L. HOM05D006537 ORTHO05D008186 2.0e-101 372.9 248 73.0
Phvul.011G055200 Phaseolus vulgaris HOM05D006537 ORTHO05D008186 2.0e-101 372.9 249 74.3
VMungo1127G2200 Vigna mungo HOM05D006537 ORTHO05D008186 9.8e-101 370.5 249 73.5
Glyma.12G053200 Glycine max HOM05D006537 ORTHO05D008186 1.7e-100 369.8 249 72.7
Glyma.11G128700 Glycine max HOM05D006537 ORTHO05D008186 2.9e-100 369.0 249 73.9
ECA238G3138 Erigeron canadensis HOM05D000961 ORTHO05D000001 4.9e-100 368.2 238 78.2
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 1.1e-99 367.1 243 74.9
RcHm_v2.0_Chr4g0407291 Rosa chinensis HOM05D006537 ORTHO05D008186 4.1e-99 365.2 249 73.5
Sed0000584 Sechium edule HOM05D006537 ORTHO05D008186 7.1e-99 364.4 257 71.2
EL10Ac3g05587 Beta vulgaris HOM05D006537 ORTHO05D008186 1.0e-97 360.5 268 67.9
THA.LOC104826193 Tarenaya hassleriana HOM05D006537 ORTHO05D008186 2.3e-97 359.4 249 73.1
Lsat_1_v5_gn_2_34721 Lactuca sativa HOM05D006537 ORTHO05D008186 3.0e-97 359.0 249 72.7
Aa31LG5G5440 Aethionema arabicum HOM05D006537 ORTHO05D008186 3.9e-97 358.6 249 71.1
Lalb_Chr01g0003221 Lupinus albus HOM05D006537 ORTHO05D008186 6.6e-97 357.8 249 71.5
CDE04G1858 Ceratophyllum demersum HOM05D006537 ORTHO05D008186 9.5e-96 354.0 248 69.0
Nn1g09574 Nelumbo nucifera HOM05D006537 ORTHO05D008186 5.2e-94 348.2 249 70.7
CAN.G65.183 Capsicum annuum HOM05D006537 ORTHO05D008186 2.6e-93 345.9 249 70.7
vmacro22675 Vaccinium macrocarpon HOM05D006537 ORTHO05D008186 1.1e-91 340.5 212 81.6
Manes.04G042325 Manihot esculenta HOM05D006537 ORTHO05D008186 1.2e-90 337.0 207 82.6
SEGI_14947 Sequoiadendron giganteum HOM05D006537 ORTHO05D008186 1.2e-90 337.0 246 68.7
Nitab4.5_0003132g0110 Nicotiana tabacum HOM05D006537 ORTHO05D008186 2.7e-90 335.9 237 74.3
HPP92_005584 Vanilla planifolia HOM05D006537 ORTHO05D008186 4.6e-90 335.1 249 68.3
HPP92_005589 Vanilla planifolia HOM05D006537 ORTHO05D008186 6.0e-90 334.7 249 68.3
COL.COLO4_24411 Corchorus olitorius HOM05D006537 ORTHO05D008186 1.0e-89 334.0 212 79.2
ATR0686G132 Amborella trichopoda HOM05D006537 ORTHO05D008186 1.5e-88 330.1 249 65.5
Zm00001eb237480 Zea mays HOM05D006537 ORTHO05D008186 2.1e-87 326.2 249 64.7
Sabra07G0103400 Salix brachista HOM05D006537 ORTHO05D008186 3.6e-87 325.5 217 77.9
Os02g0272600 Oryza sativa ssp. japonica HOM05D006537 ORTHO05D008186 1.4e-86 323.6 249 64.7
Dinv44198 Davidia involucrata HOM05D006537 ORTHO05D008186 3.8e-84 315.5 188 86.2
AUR62002287 Chenopodium quinoa HOM05D006537 ORTHO05D008186 1.1e-83 313.9 202 73.3
Sc25g0002980 Simmondsia chinensis HOM05D006537 ORTHO05D008186 1.0e-81 307.4 249 64.3
PGR083G1737 Punica granatum HOM05D006537 ORTHO05D008186 5.1e-81 305.1 249 66.3
A10p04320 Brassica napus HOM05D006537 ORTHO05D008186 7.3e-80 301.2 198 71.7
Cpa.g.sc409.1 Carica papaya HOM05D006537 ORTHO05D008186 3.6e-79 298.9 206 76.2
Lj6A56G22 Lonicera japonica HOM05D006537 ORTHO05D008186 1.1e-78 297.4 249 64.7
MSTRG.24999 Avicennia marina HOM05D006537 ORTHO05D008186 9.9e-77 290.8 243 63.4
Hund03149 Selenicereus undatus HOM05D006537 ORTHO05D008186 1.2e-74 283.9 258 62.4
AagrBONN_evm.TU.Sc2ySwM_344.2170 Anthoceros agrestis HOM05D006537 ORTHO05D008186 4.0e-70 268.9 245 55.1
SMO174G0097 Selaginella moellendorffii HOM05D006537 ORTHO05D008186 2.3e-65 253.1 242 56.2
Mapoly0042s0024 Marchantia polymorpha HOM05D006537 ORTHO05D008186 8.7e-65 251.1 245 50.6
BraA10t42709Z Brassica rapa HOM05D006537 ORTHO05D008186 4.3e-64 248.8 156 76.3
Pp3c14_4280 Physcomitrium patens HOM05D006537 ORTHO05D008186 9.0e-62 241.1 248 49.6
Pp3c10_5780 Physcomitrium patens HOM05D006537 ORTHO05D008186 2.2e-60 236.5 241 48.1
FAN07G2858 Fragaria x ananassa HOM05D006537 ORTHO05D008186 1.1e-56 224.2 206 60.2
SHI21233 Sapria himalayana HOM05D006537 ORTHO05D008186 6.5e-52 208.4 154 64.3
PSO675G6606 Papaver somniferum HOM05D006537 ORTHO05D008186 2.3e-49 199.9 152 65.8
PSO675G1145 Papaver somniferum HOM05D006537 ORTHO05D008186 3.9e-49 199.1 144 68.8
PSO229G0026 Papaver somniferum HOM05D006537 ORTHO05D008186 1.1e-48 197.6 143 68.5
PSO832G3398 Papaver somniferum HOM05D006537 ORTHO05D008186 1.5e-48 197.2 117 81.2
PSO017G0422 Papaver somniferum HOM05D006537 ORTHO05D008186 1.3e-47 194.1 113 83.2
SalBow7G4202 Salvia bowleyana HOM05D006537 ORTHO05D008186 3.7e-47 192.6 142 66.2
DCAR_022903 Daucus carota HOM05D006537 ORTHO05D008186 6.5e-36 155.2 122 68.9
Lj6P622T45 Lonicera japonica HOM05D006537 ORTHO05D008186 2.7e-34 149.8 91 79.1
Cre13.g576300 Chlamydomonas reinhardtii HOM05D006537 ORTHO05D008186 6.1e-34 148.7 235 37.9
BraA10t42699Z Brassica rapa HOM05D006537 ORTHO05D008186 1.4e-33 147.5 92 78.3
A10p04420 Brassica napus HOM05D006537 ORTHO05D008186 1.8e-33 147.1 93 75.3
CBR_g29804 Chara braunii HOM05D006537 ORTHO05D008186 7.2e-19 98.6 71 67.6
vmacro00700 Vaccinium macrocarpon HOM05D006537 ORTHO05D008186 3.6e-18 96.3 166 42.8
Cpa.g.c46401 Carica papaya HOM05D006537 ORTHO05D008186 5.7e-08 62.4 39 66.7
Sopen06g005930 Solanum pennellii HOM05D006537 ORTHO05D008186 2.2e-07 60.5 38 86.8


User provided reference genes

Program Settings