Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 2.0e-116 422.5 226 100.0
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 2.1e-70 269.6 246 64.6
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 1.1e-69 267.3 238 67.2
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 1.4e-69 266.9 249 62.7
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 1.4e-69 266.9 238 67.2
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 1.2e-68 263.8 238 66.4
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 4.5e-68 261.9 211 66.8
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 9.9e-68 260.8 211 65.9
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 1.3e-67 260.4 228 65.8
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 1.7e-67 260.0 217 65.0
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 4.9e-67 258.5 226 64.2
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 8.4e-67 257.7 223 66.8
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 1.1e-66 257.3 224 63.8
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 1.4e-66 256.9 224 63.8
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 1.4e-66 256.9 224 63.8
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 9.3e-66 254.2 233 61.4
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 1.6e-65 253.4 229 64.2
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 1.0e-64 250.8 227 63.0
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 3.9e-64 248.8 217 63.6
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 3.9e-64 248.8 203 69.0
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 5.1e-64 248.4 219 63.0
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 6.7e-64 248.1 214 66.8
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 6.7e-64 248.1 228 61.0
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 1.1e-63 247.3 212 66.5
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 2.5e-63 246.1 224 59.8
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 4.3e-63 245.4 187 70.1
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 5.6e-63 245.0 229 62.0
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 9.6e-63 244.2 212 66.0
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 1.3e-62 243.8 230 62.6
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 3.7e-62 242.3 229 59.4
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 3.7e-62 242.3 192 67.2
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 4.8e-62 241.9 230 62.2
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 4.8e-62 241.9 231 64.9
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 8.1e-62 241.1 212 65.6
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 8.1e-62 241.1 196 68.9
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 8.1e-62 241.1 224 61.6
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 1.1e-61 240.7 205 64.9
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 1.8e-61 240.0 167 75.4
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 1.8e-61 240.0 227 62.6
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.8e-61 240.0 230 62.2
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 2.4e-61 239.6 205 68.3
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 3.1e-61 239.2 224 62.1
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 6.9e-61 238.0 233 59.2
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 9.0e-61 237.7 229 62.4
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 2.0e-60 236.5 205 64.4
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 2.0e-60 236.5 215 61.9
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 1.3e-59 233.8 183 68.9
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 1.7e-59 233.4 200 64.0
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 2.2e-59 233.0 202 66.3
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 2.9e-59 232.6 216 63.0
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 4.9e-59 231.9 206 61.7
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 4.9e-59 231.9 205 65.9
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 6.5e-59 231.5 227 58.6
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 6.5e-59 231.5 222 61.3
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 8.4e-59 231.1 208 62.0
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 1.1e-58 230.7 226 59.7
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 1.4e-58 230.3 197 62.9
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 3.2e-58 229.2 197 62.4
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 3.2e-58 229.2 190 67.4
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 3.2e-58 229.2 210 61.4
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 4.2e-58 228.8 196 63.8
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 4.2e-58 228.8 197 67.0
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 5.5e-58 228.4 219 58.0
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 5.5e-58 228.4 219 58.0
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 5.5e-58 228.4 214 58.9
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 5.5e-58 228.4 171 67.8
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 5.5e-58 228.4 198 65.7
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 7.1e-58 228.0 219 58.0
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 7.1e-58 228.0 209 63.6
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 7.1e-58 228.0 221 59.3
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 7.1e-58 228.0 190 66.8
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 9.3e-58 227.6 172 66.3
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 9.3e-58 227.6 205 64.4
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 1.2e-57 227.3 198 63.1
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 2.1e-57 226.5 218 58.7
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 3.5e-57 225.7 196 63.3
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 3.5e-57 225.7 196 63.3
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 3.5e-57 225.7 196 63.3
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 6.0e-57 224.9 197 63.5
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 6.0e-57 224.9 225 59.6
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 1.8e-56 223.4 186 66.1
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 1.8e-56 223.4 186 62.9
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 2.3e-56 223.0 186 65.1
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 8.7e-56 221.1 173 65.9
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 1.1e-55 220.7 201 62.2
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 1.1e-55 220.7 215 60.5
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 1.1e-55 220.7 187 63.6
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 2.5e-55 219.5 201 60.7
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 5.7e-55 218.4 185 63.8
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 7.4e-55 218.0 197 58.9
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 1.6e-54 216.9 203 60.6
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 1.6e-54 216.9 225 57.8
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 1.4e-53 213.8 207 58.0
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 2.6e-52 209.5 219 56.6
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 3.4e-52 209.1 215 55.3
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 3.4e-52 209.1 191 61.8
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 4.5e-52 208.8 207 57.0
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 7.6e-52 208.0 206 58.3
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 1.7e-51 206.8 209 56.9
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 8.4e-51 204.5 179 67.0
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 3.9e-48 195.7 131 71.8
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 1.1e-47 194.1 162 64.8
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 1.5e-47 193.7 134 70.9
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 2.5e-47 193.0 129 75.2
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 2.5e-47 193.0 146 65.1
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 2.8e-46 189.5 127 74.8
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 8.2e-46 188.0 150 64.0
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 1.4e-45 187.2 116 79.3
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 1.8e-45 186.8 211 54.0
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 2.9e-43 179.5 170 57.1
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 1.1e-42 177.6 138 70.3
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 7.2e-42 174.9 148 62.8
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 7.9e-41 171.4 172 51.2
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 2.0e-39 166.8 177 55.9
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 1.7e-38 163.7 132 68.2
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 3.7e-38 162.5 173 53.8
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 6.3e-38 161.8 110 75.5
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 1.4e-37 160.6 164 54.3
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 1.5e-36 157.1 177 52.0
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 1.7e-35 153.7 202 51.0
TAR628G0990 Trochodendron aralioides HOM05D005878 ORTHO05D007433 8.5e-27 124.8 166 50.6
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 2.5e-26 123.2 162 47.5
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 2.1e-25 120.2 99 63.6
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 3.6e-25 119.4 103 60.2
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 1.1e-18 97.8 212 35.8
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 1.9e-18 97.1 97 59.8
Potri.001G032200 Populus trichocarpa HOM05D005878 ORTHO05D007433 9.8e-15 84.7 236 34.7
Atru.chr7.1915 Acer truncatum HOM05D005878 ORTHO05D007433 2.4e-13 80.1 104 47.1
Atru.chr3.2623 Acer truncatum HOM05D005878 ORTHO05D007433 1.2e-12 77.8 83 55.4
PGSC0003DMG400040390 Solanum tuberosum HOM05D005878 ORTHO05D007433 4.4e-07 59.3 72 47.2
C07p55210 Brassica napus HOM05D005878 ORTHO05D033170 2.2e-06 57.0 50 68.0
BolC7t45992H Brassica oleracea HOM05D005878 ORTHO05D033170 2.2e-06 57.0 53 73.6


User provided reference genes

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