Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g09610 Coffea canephora HOM05D003115 ORTHO05D003595 1.3e-148 529.6 266 100.0
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 1.5e-86 323.6 266 61.3
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 6.4e-82 308.1 268 60.8
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 1.2e-80 303.9 266 57.1
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 1.2e-80 303.9 264 61.4
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 3.9e-79 298.9 263 58.9
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 6.2e-77 291.6 267 58.8
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 3.4e-75 285.8 263 58.9
Cfa010533 Carpinus fangiana HOM05D003115 ORTHO05D003595 4.4e-75 285.4 263 58.9
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 4.4e-75 285.4 262 55.7
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 2.2e-74 283.1 266 57.9
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 2.4e-73 279.6 266 56.0
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 2.4e-73 279.6 266 56.0
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 3.2e-73 279.3 263 55.5
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 4.1e-73 278.9 263 55.1
CAN.G1155.21 Capsicum annuum HOM05D003115 ORTHO05D003595 1.6e-72 276.9 263 55.1
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 2.1e-72 276.6 266 54.1
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 2.7e-72 276.2 263 55.9
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 3.5e-72 275.8 266 54.9
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 7.8e-72 274.6 263 56.3
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 1.5e-70 270.4 263 55.5
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 1.5e-70 270.4 263 54.0
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 2.5e-70 269.6 266 54.9
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 1.2e-69 267.3 263 54.8
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 1.6e-69 266.9 263 53.2
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 6.2e-69 265.0 263 53.2
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 1.4e-68 263.8 264 53.0
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 3.4e-67 259.2 264 51.9
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 5.8e-67 258.5 263 52.5
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 9.9e-67 257.7 263 52.5
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 1.3e-66 257.3 266 51.5
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 1.3e-66 257.3 269 51.7
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 2.2e-66 256.5 269 52.0
Cc00_g09570 Coffea canephora HOM05D003115 ORTHO05D003595 1.4e-65 253.8 140 93.6
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 2.4e-65 253.1 268 53.0
Cc00_g27550 Coffea canephora HOM05D003115 ORTHO05D003595 4.2e-65 252.3 140 93.6
Oeu043446.1 Olea europaea HOM05D003115 ORTHO05D003595 9.3e-65 251.1 248 55.2
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 1.6e-64 250.4 263 52.5
PGSC0003DMG400007741 Solanum tuberosum HOM05D003115 ORTHO05D003595 1.6e-64 250.4 254 52.8
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 2.1e-64 250.0 263 51.7
Cpa.g.sc83.40 Carica papaya HOM05D003115 ORTHO05D003595 2.7e-64 249.6 264 52.7
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 4.6e-64 248.8 263 51.3
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 7.8e-64 248.1 263 51.3
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.7e-63 246.9 263 51.0
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 5.6e-62 241.9 266 49.2
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 7.3e-62 241.5 267 50.6
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 9.6e-62 241.1 266 50.8
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 1.1e-60 237.7 267 48.7
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 2.4e-60 236.5 281 47.0
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 2.4e-60 236.5 286 47.2
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 6.9e-60 235.0 286 46.9
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 2.0e-59 233.4 266 49.6
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 2.0e-59 233.4 263 47.9
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 2.6e-59 233.0 286 46.5
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 5.8e-59 231.9 286 46.9
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 9.9e-59 231.1 262 49.2
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 3.8e-58 229.2 271 47.6
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 4.2e-57 225.7 263 46.4
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 4.2e-57 225.7 286 45.1
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 5.4e-57 225.3 266 47.0
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 7.1e-57 224.9 263 46.8
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 7.1e-57 224.9 263 48.7
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 7.1e-57 224.9 265 47.5
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 7.1e-57 224.9 314 43.9
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 2.1e-56 223.4 264 46.2
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 2.1e-56 223.4 263 47.9
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 2.1e-56 223.4 263 48.7
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 3.5e-56 222.6 260 49.2
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 1.0e-55 221.1 264 44.7
TPR.G14704 Trifolium pratense HOM05D003115 ORTHO05D003595 1.8e-55 220.3 265 46.4
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 2.3e-55 219.9 266 45.1
Psat0s3058g0040 Pisum sativum HOM05D003115 ORTHO05D003595 2.3e-55 219.9 264 47.3
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 5.1e-55 218.8 264 45.5
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 8.7e-55 218.0 288 44.4
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 1.1e-54 217.6 281 45.2
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 1.5e-54 217.2 263 44.5
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 9.6e-54 214.5 265 47.5
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 9.6e-54 214.5 263 45.2
Lalb_Chr23g0269101 Lupinus albus HOM05D003115 ORTHO05D003595 9.6e-54 214.5 265 46.8
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 6.2e-53 211.8 264 45.1
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 6.2e-53 211.8 230 50.9
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 6.9e-52 208.4 267 44.2
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 9.0e-52 208.0 264 45.8
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 1.5e-51 207.2 293 43.3
HPP92_007262 Vanilla planifolia HOM05D003115 ORTHO05D003595 2.6e-51 206.5 270 41.9
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 2.2e-50 203.4 267 43.8
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 3.8e-50 202.6 269 43.1
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 4.9e-50 202.2 266 42.9
Atru.chr4.1598 Acer truncatum HOM05D003115 ORTHO05D003595 1.4e-49 200.7 223 48.0
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 2.4e-49 199.9 283 41.7
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 3.2e-49 199.5 265 43.8
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 5.5e-49 198.7 263 42.2
Hund29080 Selenicereus undatus HOM05D003115 ORTHO05D003595 5.5e-49 198.7 264 42.8
Hund29082 Selenicereus undatus HOM05D003115 ORTHO05D003595 5.5e-49 198.7 264 42.8
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 1.6e-48 197.2 269 43.5
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 2.1e-48 196.8 266 44.0
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 7.9e-48 194.9 266 44.4
CDE07G0216 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 1.8e-47 193.7 263 43.7
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 3.9e-47 192.6 247 43.3
A09p40420 Brassica napus HOM05D003115 ORTHO05D003595 2.4e-44 183.3 274 39.1
BraA09t39538Z Brassica rapa HOM05D003115 ORTHO05D003595 3.1e-44 183.0 274 39.8
PGSC0003DMG400026434 Solanum tuberosum HOM05D003115 ORTHO05D003595 7.6e-43 178.3 180 50.6
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 1.1e-41 174.5 267 39.3
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 2.5e-41 173.3 267 38.6
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 1.6e-40 170.6 267 38.6
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 3.5e-40 169.5 267 38.6
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 7.9e-40 168.3 270 40.7
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 1.9e-38 163.7 179 50.8
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 4.5e-35 152.5 229 40.2
Rhsim02G0023500 Rhododendron simsii HOM05D003115 ORTHO05D003595 5.9e-35 152.1 218 42.7
CANSAT78G1701 Cannabis sativa HOM05D003115 ORTHO05D003595 2.9e-34 149.8 188 45.2
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 1.4e-33 147.5 224 39.7
Haze_07640 Corylus avellana HOM05D003115 ORTHO05D003595 1.4e-33 147.5 179 46.4
SEGI_02895 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 5.1e-31 139.0 268 32.8
SEGI_04472 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 5.1e-31 139.0 268 32.8
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 1.7e-29 134.0 180 41.7
HPP92_007257 Vanilla planifolia HOM05D003115 ORTHO05D003595 1.4e-28 131.0 203 37.9
Psat4g000360 Pisum sativum HOM05D003115 ORTHO05D003595 1.1e-25 121.3 182 40.7
C05p23800 Brassica napus HOM05D003115 ORTHO05D003595 3.9e-23 112.8 243 31.3
BcaC05g26355 Brassica carinata HOM05D003115 ORTHO05D003595 7.4e-22 108.6 138 44.9
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 1.3e-21 107.8 276 29.7
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 6.5e-18 95.5 276 30.4
BraA09t42180Z Brassica rapa HOM05D003115 ORTHO05D003595 8.5e-18 95.1 220 32.7
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 8.0e-16 88.6 260 28.8
CARHR255300 Cardamine hirsuta HOM05D003115 ORTHO05D003595 8.0e-16 88.6 206 31.6
PGSC0003DMG400007742 Solanum tuberosum HOM05D000005 ORTHO05D003595 8.0e-16 88.6 78 60.3
COL.COLO4_08387 Corchorus olitorius HOM05D003115 ORTHO05D003595 1.4e-15 87.8 141 39.0
Hund16694 Selenicereus undatus HOM05D003115 ORTHO05D003595 8.8e-15 85.1 138 36.2
AUR62038226 Chenopodium quinoa HOM05D010117 ORTHO05D012431 9.7e-14 81.6 67 58.2
Rhsim07G0171500 Rhododendron simsii HOM05D003115 ORTHO05D003595 8.2e-13 78.6 110 43.6
Rhsim07G0171100 Rhododendron simsii HOM05D003115 ORTHO05D003595 1.2e-11 74.7 100 45.0
Os01g0584800 Oryza sativa ssp. japonica HOM05D003115 ORTHO05D003595 2.1e-08 63.9 48 68.8
COL.COLO4_08386 Corchorus olitorius HOM05D003115 ORTHO05D003595 2.3e-07 60.5 36 80.6
Eucgr.H00031 Eucalyptus grandis HOM05D003115 ORTHO05D003595 5.2e-07 59.3 60 50.0
SMO164G0231 Selaginella moellendorffii HOM05D003115 ORTHO05D003595 8.8e-07 58.5 251 27.5
BcaC05g26356 Brassica carinata HOM05D003115 ORTHO05D003595 1.5e-06 57.8 91 35.2
Actinidia10072 Actinidia chinensis HOM05D003115 ORTHO05D003595 4.4e-06 56.2 45 64.4


User provided reference genes

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