Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g09550 Coffea canephora HOM05D002053 ORTHO05D153144 9.7e-45 183.0 83 100.0
BcaC06g33540 Brassica carinata HOM05D002053 ORTHO05D002135 3.0e-06 55.1 59 47.5
Gohir.D04G092248 Gossypium hirsutum HOM05D002053 ORTHO05D002135 3.0e-06 55.1 33 72.7
Migut.F00489 Erythranthe guttata HOM05D002053 ORTHO05D002135 4.0e-06 54.7 33 75.8
Migut.H01298 Erythranthe guttata HOM05D002053 ORTHO05D002135 4.0e-06 54.7 33 75.8
THA.LOC104813334 Tarenaya hassleriana HOM05D002053 ORTHO05D002135 4.0e-06 54.7 33 75.8
MSTRG.18527 Avicennia marina HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
CANSAT21G0714 Cannabis sativa HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
CAN.G1199.3 Capsicum annuum HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
CAN.G1396.7 Capsicum annuum HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
CAN.G46.38 Capsicum annuum HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Cpa.g.sc13.286 Carica papaya HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Cpa.g.sc13.287 Carica papaya HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
AUR62012748 Chenopodium quinoa HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
AUR62021910 Chenopodium quinoa HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
ClCG01G004170 Citrullus lanatus HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
ClCG07G016850 Citrullus lanatus HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Ciclev10024403m.g Citrus clementina HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Cc10_g12750 Coffea canephora HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Cc10_g13540 Coffea canephora HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
MELO3C005520.2 Cucumis melo HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
MELO3C016459.2 Cucumis melo HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
MELO3C017659.2 Cucumis melo HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
CsaV3_5G004330 Cucumis sativus L. HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Eucgr.D02096 Eucalyptus grandis HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
FvH4_5g19240 Fragaria vesca HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
FAN04G3204 Fragaria x ananassa HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
FAN08G3348 Fragaria x ananassa HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
FAN13G3286 Fragaria x ananassa HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
FAN18G3674 Fragaria x ananassa HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Manes.02G041100 Manihot esculenta HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Peaxi162Scf00051g00721 Petunia axillaris HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Peaxi162Scf00078g00529 Petunia axillaris HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Peaxi162Scf00078g00541 Petunia axillaris HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Peaxi162Scf00961g00115 Petunia axillaris HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Potri.001G156100 Populus trichocarpa HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Potri.003G078700 Populus trichocarpa HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Potri.013G106800 Populus trichocarpa HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Prupe.5G066200 Prunus persica HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
RcHm_v2.0_Chr7g0203741 Rosa chinensis HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Sabra01G0134800 Salix brachista HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Sabra03G0048800 Salix brachista HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Sabra13G0092200 Salix brachista HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Sed0006412 Sechium edule HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Sed0008541 Sechium edule HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Sed0023228 Sechium edule HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Sed0024145 Sechium edule HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Hund11607 Selenicereus undatus HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Sc01g0008320 Simmondsia chinensis HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Sc07g0009240 Simmondsia chinensis HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Sc07g0009250 Simmondsia chinensis HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Solyc04g008460.4 Solanum lycopersicum HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Solyc06g064630.3 Solanum lycopersicum HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Sopen04g003610 Solanum pennellii HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
Sopen06g023110 Solanum pennellii HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
PGSC0003DMG400029485 Solanum tuberosum HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
PGSC0003DMG400033143 Solanum tuberosum HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
SGA_v2.0_scaffold14G07106 Striga asiatica HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
SGA_v2.0_scaffold238G43960 Striga asiatica HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
SGA_v2.0_scaffold2G01223 Striga asiatica HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
SGA_v2.0_scaffold44G16554 Striga asiatica HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
THA.LOC104806668 Tarenaya hassleriana HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
THA.LOC104806672 Tarenaya hassleriana HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
THA.LOC104812773 Tarenaya hassleriana HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
THA.LOC104813217 Tarenaya hassleriana HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
THA.LOC104814470 Tarenaya hassleriana HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
THA.LOC104815501 Tarenaya hassleriana HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
TWI38G0045 Tripterygium wilfordii HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
TWI39G1294 Tripterygium wilfordii HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
TWI81G0181 Tripterygium wilfordii HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
unitig_0.g219 Utricularia gibba HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
unitig_60.g25716 Utricularia gibba HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
unitig_747.g21437 Utricularia gibba HOM05D002053 ORTHO05D002135 5.2e-06 54.3 33 75.8
arahy.Tifrunner.gnm1.ann1.2F8MA2 Arachis hypogaea HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
arahy.Tifrunner.gnm1.ann1.4HN5I7 Arachis hypogaea HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
arahy.Tifrunner.gnm1.ann1.PQ8ST8 Arachis hypogaea HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
arahy.Tifrunner.gnm1.ann1.S80HYQ Arachis hypogaea HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
MSTRG.8832 Avicennia marina HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 75.8
Ca_06905_v3 Cicer arietinum L. HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
Ciclev10002413m.g Citrus clementina HOM05D002053 ORTHO05D002135 6.8e-06 53.9 70 42.9
Glyma.01G207700 Glycine max HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
Glyma.05G061400 Glycine max HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
Glyma.11G034700 Glycine max HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
Glyma.17G143200 Glycine max HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
Lj2g0011315 Lotus japonicus HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
Lj4g0006293 Lotus japonicus HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
Lalb_Chr05g0214361 Lupinus albus HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
Lalb_Chr09g0324321 Lupinus albus HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
Lalb_Chr09g0330001 Lupinus albus HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
Lalb_Chr16g0379481 Lupinus albus HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
Medtr2g014220 Medicago truncatula HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
Medtr3g078653 Medicago truncatula HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
Phvul.002G057000 Phaseolus vulgaris HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
TPR.G26951 Trifolium pratense HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
TPR.G27314 Trifolium pratense HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
VMungo0251G0809 Vigna mungo HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
VMungo0251G3487 Vigna mungo HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
VMungo1215G2339 Vigna mungo HOM05D002053 ORTHO05D002135 6.8e-06 53.9 33 72.7
Atru.chr9.1287 Acer truncatum HOM05D002053 ORTHO05D002135 8.8e-06 53.5 33 72.7
AL4G31790 Arabidopsis lyrata HOM05D002053 ORTHO05D002135 8.8e-06 53.5 33 72.7
EL10Ac5g12364 Beta vulgaris HOM05D002053 ORTHO05D002135 8.8e-06 53.5 33 72.7
EL10Ac8g20118 Beta vulgaris HOM05D002053 ORTHO05D002135 8.8e-06 53.5 33 72.7
CARHR223250 Cardamine hirsuta HOM05D002053 ORTHO05D002135 8.8e-06 53.5 33 72.7
CiPaw.11G081400 Carya illinoinensis HOM05D002053 ORTHO05D002135 8.8e-06 53.5 33 72.7
Haze_07949 Corylus avellana HOM05D002053 ORTHO05D002135 8.8e-06 53.5 33 72.7
Haze_21284 Corylus avellana HOM05D002053 ORTHO05D002135 8.8e-06 53.5 33 72.7
Hma1.2p1_1132F.1_g260230 Hydrangea macrophylla HOM05D002053 ORTHO05D002135 8.8e-06 53.5 33 72.7
Lj1A977T66 Lonicera japonica HOM05D002053 ORTHO05D002135 8.8e-06 53.5 33 72.7
Lj2A221G33 Lonicera japonica HOM05D002053 ORTHO05D002135 8.8e-06 53.5 33 72.7
MD04G1062000 Malus domestica HOM05D002053 ORTHO05D002135 8.8e-06 53.5 33 72.7
MD06G1055700 Malus domestica HOM05D002053 ORTHO05D002135 8.8e-06 53.5 33 72.7
Manes.01G082600 Manihot esculenta HOM05D002053 ORTHO05D002135 8.8e-06 53.5 33 72.7
Nitab4.5_0003510g0020 Nicotiana tabacum HOM05D002053 ORTHO05D002135 8.8e-06 53.5 33 72.7
PGR031G0373 Punica granatum HOM05D002053 ORTHO05D002135 8.8e-06 53.5 33 72.7
GSVIVG01034594001 Vitis vinifera HOM05D002053 ORTHO05D439649 8.8e-06 53.5 33 69.7


User provided reference genes

Program Settings