Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 8.2e-149 530.4 276 100.0
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 3.1e-87 325.9 279 60.2
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 7.6e-86 321.2 279 59.9
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 3.4e-78 295.8 279 57.3
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 7.3e-73 278.1 279 54.5
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 1.6e-72 276.9 279 53.4
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 2.4e-71 273.1 280 51.1
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 1.7e-69 266.9 277 50.5
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 8.4e-69 264.6 274 51.1
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 1.1e-68 264.2 273 49.5
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 1.9e-68 263.5 273 49.1
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 5.4e-68 261.9 273 49.1
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 2.7e-67 259.6 273 50.5
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 4.6e-67 258.8 273 52.0
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 6.0e-67 258.5 276 48.9
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 1.3e-66 257.3 273 50.5
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 1.3e-66 257.3 279 51.3
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 1.8e-66 256.9 263 53.6
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 1.8e-66 256.9 270 50.7
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 1.8e-66 256.9 302 46.0
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 1.8e-66 256.9 272 51.8
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 2.3e-66 256.5 262 54.2
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 5.1e-66 255.4 277 47.7
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 6.7e-66 255.0 396 41.2
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 4.3e-65 252.3 276 50.4
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 1.3e-64 250.8 278 48.9
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 1.6e-64 250.4 277 46.9
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 2.1e-64 250.0 276 48.6
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 8.1e-64 248.1 263 51.3
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 1.4e-63 247.3 281 48.4
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 1.4e-63 247.3 292 46.2
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 3.1e-63 246.1 281 47.7
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 3.4e-62 242.7 284 45.8
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 9.9e-62 241.1 277 46.9
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 9.9e-62 241.1 264 48.5
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 2.9e-61 239.6 274 48.9
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 2.9e-61 239.6 269 48.3
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 3.8e-61 239.2 278 48.9
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 1.1e-60 237.7 274 47.1
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 1.1e-60 237.7 274 49.3
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 2.1e-59 233.4 276 44.9
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 2.7e-59 233.0 283 45.6
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 2.7e-59 233.0 274 48.5
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 2.7e-59 233.0 277 45.8
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 2.7e-59 233.0 277 47.3
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 3.5e-59 232.6 274 47.4
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 4.6e-59 232.3 287 48.1
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 6.0e-59 231.9 273 47.3
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 6.0e-59 231.9 273 47.3
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 7.9e-59 231.5 280 47.9
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 7.9e-59 231.5 299 43.8
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.3e-58 230.7 278 48.2
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 1.8e-58 230.3 281 45.2
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 2.3e-58 229.9 278 48.2
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 2.3e-58 229.9 278 48.2
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 3.9e-58 229.2 277 46.2
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 5.1e-58 228.8 275 46.9
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.9e-57 226.9 278 47.1
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 2.5e-57 226.5 278 47.1
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 5.6e-57 225.3 278 44.2
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 1.3e-56 224.2 272 45.2
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 1.6e-56 223.8 270 46.3
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 2.1e-56 223.4 278 44.2
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 2.8e-56 223.0 278 45.3
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 4.8e-56 222.2 276 44.9
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 4.8e-56 222.2 276 44.9
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 8.2e-56 221.5 278 44.2
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 3.1e-55 219.5 277 44.0
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 5.3e-55 218.8 278 43.9
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 5.3e-55 218.8 278 43.9
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 5.3e-55 218.8 278 43.9
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 5.8e-54 215.3 276 41.3
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 1.7e-53 213.8 270 44.8
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 2.2e-53 213.4 274 43.4
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 2.2e-53 213.4 278 44.6
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 2.2e-53 213.4 274 42.3
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 4.2e-52 209.1 276 39.9
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 9.3e-52 208.0 274 41.2
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 1.2e-51 207.6 276 39.1
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 3.9e-50 202.6 276 42.8
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 3.3e-49 199.5 228 46.9
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 1.8e-47 193.7 277 41.5
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 2.6e-46 189.9 276 42.8
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 2.9e-45 186.4 272 38.6
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 9.4e-44 181.4 272 37.9
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 6.1e-43 178.7 274 39.4
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 7.9e-43 178.3 209 46.9
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 5.3e-39 165.6 276 37.0
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 3.6e-35 152.9 212 42.0
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 5.1e-34 149.1 302 33.4
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 1.1e-33 147.9 152 52.0
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 1.4e-31 141.0 163 50.9
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 2.0e-30 137.1 272 33.5
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 6.1e-27 125.6 148 49.3
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 3.7e-24 116.3 155 44.5
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 4.1e-23 112.8 133 48.1
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 9.1e-23 111.7 321 27.1
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 1.6e-22 110.9 272 32.7
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 5.2e-18 95.9 165 37.6
Oeu063929.1 Olea europaea HOM05D006140 ORTHO05D007834 1.2e-14 84.7 55 70.9
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 2.5e-12 77.0 71 49.3
Medtr5g019630 Medicago truncatula HOM05D006140 ORTHO05D007834 8.0e-11 72.0 111 44.1
Hma1.2p1_1819F.1_g304030 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 2.0e-09 67.4 87 37.9
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 2.6e-09 67.0 357 20.7


User provided reference genes

Program Settings