Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g09330 Coffea canephora HOM05D003693 ORTHO05D004698 8.5e-31 136.3 68 100.0
Cc00_g09380 Coffea canephora HOM05D003693 ORTHO05D004698 7.2e-14 80.1 42 92.9
Oeu014595.1 Olea europaea HOM05D003693 ORTHO05D004698 1.2e-08 62.8 34 88.2
THA.LOC104821617 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 1.2e-08 62.8 34 91.2
Cc02_g28770 Coffea canephora HOM05D003693 ORTHO05D004698 2.0e-08 62.0 34 88.2
Thecc.01G406700 Theobroma cacao HOM05D003693 ORTHO05D004698 2.0e-08 62.0 34 88.2
Aa31LG8G10790 Aethionema arabicum HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
AL3G39260 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
AL8G20490 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
AL8G20570 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
AT3G24090 Arabidopsis thaliana HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
BcaB03g14607 Brassica carinata HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
BcaB06g26591 Brassica carinata HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
BcaC01g03357 Brassica carinata HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
BcaC06g35626 Brassica carinata HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
A03p43420 Brassica napus HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
A07p08260 Brassica napus HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
C03p53370 Brassica napus HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
BolC3t17596H Brassica oleracea HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
BraA03t13480Z Brassica rapa HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
BraA07t28609Z Brassica rapa HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
Carub.0003s2444 Capsella rubella HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
CARHR100130 Cardamine hirsuta HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
COL.COLO4_12338 Corchorus olitorius HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
Thhalv10002424m.g Eutrema salsugineum HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
Glyma.09G249100 Glycine max HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
Glyma.18G243300 Glycine max HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
Hma1.2p1_0685F.1_g203180 Hydrangea macrophylla HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
Nitab4.5_0001676g0080 Nicotiana tabacum HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
SalBow6G5509 Salvia bowleyana HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
SalBow6G6742 Salvia bowleyana HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
Sp3g21850 Schrenkiella parvula HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
Sc10g0000370 Simmondsia chinensis HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
THA.LOC104808730 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 2.7e-08 61.6 34 88.2
CDE04G2718 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 5.9e-08 60.5 34 88.2
DCAR_029706 Daucus carota HOM05D003693 ORTHO05D004698 5.9e-08 60.5 34 85.3
MSTRG.17008 Avicennia marina HOM05D003693 ORTHO05D004698 1.0e-07 59.7 34 85.3
Duzib133G0510 Durio zibethinus HOM05D003693 ORTHO05D004698 1.0e-07 59.7 34 85.3
Duzib268G0828 Durio zibethinus HOM05D003693 ORTHO05D004698 1.0e-07 59.7 34 85.3
Gohir.A12G100800 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.0e-07 59.7 34 85.3
Gohir.D12G103600 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.0e-07 59.7 34 85.3
Gorai.008G112800 Gossypium raimondii HOM05D003693 ORTHO05D004698 1.0e-07 59.7 34 85.3
MBI19_g25011_MAGBIO Magnolia biondii HOM05D003693 ORTHO05D004698 1.0e-07 59.7 34 85.3
Peaxi162Scf00071g01043 Petunia axillaris HOM05D003693 ORTHO05D004698 1.0e-07 59.7 34 85.3
TWI18G0649 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 1.0e-07 59.7 34 85.3
TWI36G1545 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 1.0e-07 59.7 34 85.3
unitig_0.g1393 Utricularia gibba HOM05D003693 ORTHO05D004698 1.0e-07 59.7 34 85.3
Atru.chr12.1748 Acer truncatum HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
CSS0039233 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
CAN.G1619.1 Capsicum annuum HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
Cpa.g.sc39.19 Carica papaya HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
CDE08G0573 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
Ciclev10011203m.g Citrus clementina HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
Duzib128G1866 Durio zibethinus HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
Migut.B01266 Erythranthe guttata HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
Manes.12G004200 Manihot esculenta HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
Nitab4.5_0005367g0010 Nicotiana tabacum HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
PSO339G5758 Papaver somniferum HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
PSO384G0563 Papaver somniferum HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
Potri.019G054500 Populus trichocarpa HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
Sabra19G0063500 Salix brachista HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
SalBow5G4957 Salvia bowleyana HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
SMO301G0028 Selaginella moellendorffii HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
Solyc01g087870.4 Solanum lycopersicum HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
Sopen01g034800 Solanum pennellii HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
PGSC0003DMG400006778 Solanum tuberosum HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
SGA_v2.0_scaffold119G32763 Striga asiatica HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
Thecc.05G189800 Theobroma cacao HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
GSVIVG01032211001 Vitis vinifera HOM05D003693 ORTHO05D004698 1.3e-07 59.3 34 85.3
C07p12800 Brassica napus HOM05D003693 ORTHO05D004698 1.7e-07 58.9 29 96.6
BolC7t41766H Brassica oleracea HOM05D003693 ORTHO05D004698 1.7e-07 58.9 29 96.6
Peaxi162Scf00694g00440 Petunia axillaris HOM05D003693 ORTHO05D004698 1.7e-07 58.9 32 87.5
Aqoxy1G02790 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 2.3e-07 58.5 34 82.4
Aqoxy5G04181 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 2.3e-07 58.5 34 82.4
Cfa020929 Carpinus fangiana HOM05D003693 ORTHO05D004698 2.3e-07 58.5 34 85.3
CiPaw.16G119500 Carya illinoinensis HOM05D003693 ORTHO05D004698 2.3e-07 58.5 34 85.3
AUR62009420 Chenopodium quinoa HOM05D003693 ORTHO05D004698 2.3e-07 58.5 34 85.3
AUR62023098 Chenopodium quinoa HOM05D003693 ORTHO05D004698 2.3e-07 58.5 34 85.3
MD04G1246300 Malus domestica HOM05D003693 ORTHO05D004698 2.3e-07 58.5 34 85.3
Actinidia19423 Actinidia chinensis HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 82.4
arahy.Tifrunner.gnm1.ann1.55VZFW Arachis hypogaea HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
arahy.Tifrunner.gnm1.ann1.RCZ69X Arachis hypogaea HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
CANSAT21G0769 Cannabis sativa HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
Ca_07998_v3 Cicer arietinum L. HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
Cc00_g28470 Coffea canephora HOM05D003693 ORTHO05D004698 2.9e-07 58.2 31 90.3
Dinv43405 Davidia involucrata HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 82.4
ECA248G0053 Erigeron canadensis HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 82.4
Eucgr.H01402 Eucalyptus grandis HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 82.4
FAN02G0024 Fragaria x ananassa HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
FAN05G2538 Fragaria x ananassa HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
HanXRQChr06g0179741 Helianthus annuus HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 82.4
Lsat_1_v5_gn_1_104980 Lactuca sativa HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 82.4
Lj1g0027377 Lotus japonicus HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
Lalb_Chr01g0020541 Lupinus albus HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
Lalb_Chr03g0038731 Lupinus albus HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
MD12G1263800 Malus domestica HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
Medtr7g080270 Medicago truncatula HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
Nitab4.5_0001244g0140 Nicotiana tabacum HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 82.4
Phvul.008G053200 Phaseolus vulgaris HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
Psat3g102600 Pisum sativum HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
Prupe.6G362600 Prunus persica HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
PGR031G3615 Punica granatum HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 82.4
PGR119G0062 Punica granatum HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
QL10p037598 Quercus lobata HOM05D003693 ORTHO05D004698 2.9e-07 58.2 33 84.8
Rhsim07G0058800 Rhododendron simsii HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 82.4
RcHm_v2.0_Chr3g0447661 Rosa chinensis HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
TPR.G33878 Trifolium pratense HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
TPR.G34077 Trifolium pratense HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 85.3
TAR369G0556 Trochodendron aralioides HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 82.4
TAR563G0002 Trochodendron aralioides HOM05D003693 ORTHO05D004698 2.9e-07 58.2 34 82.4
ATR1096G033 Amborella trichopoda HOM05D003693 ORTHO05D004698 3.8e-07 57.8 34 82.4
MSTRG.20559 Avicennia marina HOM05D003693 ORTHO05D004698 3.8e-07 57.8 34 82.4
EL10Ac2g04376 Beta vulgaris HOM05D003693 ORTHO05D004698 3.8e-07 57.8 34 85.3
Gohir.D04G022000 Gossypium hirsutum HOM05D003693 ORTHO05D004698 3.8e-07 57.8 34 82.4
Gorai.012G026300 Gossypium raimondii HOM05D003693 ORTHO05D004698 3.8e-07 57.8 34 82.4
Mapoly0131s0027 Marchantia polymorpha HOM05D003693 ORTHO05D004698 5.0e-07 57.4 34 82.4
MCO09G229 Micromonas commoda HOM05D003693 ORTHO05D004698 5.0e-07 57.4 34 79.4
FvH4_6g00360 Fragaria vesca HOM05D003693 ORTHO05D004698 6.6e-07 57.0 34 82.4
FAN09G1864 Fragaria x ananassa HOM05D003693 ORTHO05D004698 6.6e-07 57.0 34 82.4
FAN14G5956 Fragaria x ananassa HOM05D003693 ORTHO05D004698 6.6e-07 57.0 34 82.4
ClCG11G009710 Citrullus lanatus HOM05D003693 ORTHO05D004698 8.6e-07 56.6 34 79.4
MELO3C008557.2 Cucumis melo HOM05D003693 ORTHO05D004698 8.6e-07 56.6 34 79.4
CsaV3_2G010560 Cucumis sativus L. HOM05D003693 ORTHO05D004698 8.6e-07 56.6 34 79.4
Os12g0131100 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D004698 8.6e-07 56.6 34 82.4
Sed0016989 Sechium edule HOM05D003693 ORTHO05D004698 8.6e-07 56.6 34 79.4
HPP92_019410 Vanilla planifolia HOM05D003693 ORTHO05D004698 8.6e-07 56.6 34 82.4
HPP92_019436 Vanilla planifolia HOM05D003693 ORTHO05D004698 8.6e-07 56.6 34 82.4
Zm00001eb163520 Zea mays HOM05D003693 ORTHO05D004698 8.6e-07 56.6 34 82.4
SEGI_39911 Sequoiadendron giganteum HOM05D003693 ORTHO05D004698 1.1e-06 56.2 34 79.4
Cc00_g27460 Coffea canephora HOM05D003693 ORTHO05D004698 1.5e-06 55.8 34 82.4
vmacro13696 Vaccinium macrocarpon HOM05D003693 ORTHO05D004698 1.5e-06 55.8 34 79.4
Haze_19361 Corylus avellana HOM05D003693 ORTHO05D004698 1.9e-06 55.5 30 90.0
SHI13710 Sapria himalayana HOM05D003693 ORTHO05D004698 1.9e-06 55.5 32 84.4
Migut.C00049 Erythranthe guttata HOM05D003693 ORTHO05D004698 2.5e-06 55.1 34 79.4
Sed0025004 Sechium edule HOM05D003693 ORTHO05D004698 2.5e-06 55.1 32 81.2
Pp3c1_10100 Physcomitrium patens HOM05D003693 ORTHO05D004698 3.3e-06 54.7 34 79.4
Pp3c2_32740 Physcomitrium patens HOM05D003693 ORTHO05D004698 3.3e-06 54.7 34 79.4
Lj9A641G58 Lonicera japonica HOM05D003693 ORTHO05D004698 5.5e-06 53.9 30 83.3
Ah.10g038580 Amaranthus hybridus HOM05D003693 ORTHO05D004698 9.5e-06 53.1 28 92.9
Gohir.A05G393100 Gossypium hirsutum HOM05D003693 ORTHO05D004698 9.5e-06 53.1 34 76.5


User provided reference genes

Program Settings