Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 1.1e-105 386.7 198 100.0
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 2.6e-64 249.2 194 62.4
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 1.9e-62 243.0 192 63.0
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 1.8e-60 236.5 180 66.1
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 6.7e-60 234.6 181 64.1
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 1.1e-59 233.8 179 65.4
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 3.3e-59 232.3 181 65.2
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 3.3e-59 232.3 181 63.5
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 9.6e-59 230.7 179 63.7
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 1.3e-58 230.3 170 66.5
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 1.3e-58 230.3 190 63.7
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 1.4e-57 226.9 196 58.7
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 9.0e-57 224.2 174 63.2
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 1.5e-56 223.4 164 68.3
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 1.5e-56 223.4 163 67.5
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 2.6e-56 222.6 186 59.7
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 4.5e-56 221.9 184 60.3
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 4.5e-56 221.9 176 63.6
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 5.9e-56 221.5 179 62.6
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 7.6e-56 221.1 152 69.7
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 2.9e-55 219.2 179 61.5
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 3.8e-55 218.8 187 60.4
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 5.0e-55 218.4 161 65.2
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 6.5e-55 218.0 177 61.0
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 1.1e-54 217.2 180 59.4
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 1.4e-54 216.9 159 66.7
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.4e-54 216.9 174 62.6
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 1.4e-54 216.9 174 62.6
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.4e-54 216.9 180 62.2
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 1.9e-54 216.5 190 57.9
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 2.5e-54 216.1 188 62.8
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 2.5e-54 216.1 179 62.6
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 2.5e-54 216.1 183 60.7
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 2.5e-54 216.1 181 59.1
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 2.5e-54 216.1 157 68.8
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 4.2e-54 215.3 167 64.1
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 7.2e-54 214.5 192 60.4
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 7.2e-54 214.5 173 61.8
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 7.2e-54 214.5 181 60.2
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-53 213.8 189 59.8
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 2.7e-53 212.6 179 59.8
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.7e-53 212.6 175 60.6
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 2.7e-53 212.6 178 61.2
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 3.5e-53 212.2 169 62.1
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 6.1e-53 211.5 179 59.2
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 6.1e-53 211.5 182 57.7
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 6.1e-53 211.5 188 59.0
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 6.1e-53 211.5 187 58.8
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 1.0e-52 210.7 185 60.5
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.3e-52 210.3 179 59.2
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 1.3e-52 210.3 181 61.9
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 1.3e-52 210.3 181 61.9
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 1.3e-52 210.3 181 61.9
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 2.3e-52 209.5 181 60.2
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 3.0e-52 209.1 162 64.2
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 3.9e-52 208.8 163 63.2
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 5.1e-52 208.4 180 59.4
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 6.7e-52 208.0 182 61.0
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 6.7e-52 208.0 185 60.5
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 1.1e-51 207.2 161 62.1
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 1.1e-51 207.2 184 59.2
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 1.9e-51 206.5 181 59.1
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 1.9e-51 206.5 178 59.0
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 3.3e-51 205.7 180 58.9
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 5.7e-51 204.9 188 54.3
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 5.7e-51 204.9 179 59.8
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 9.7e-51 204.1 183 61.2
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 1.3e-50 203.8 261 46.4
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 1.3e-50 203.8 176 58.5
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.6e-50 203.4 200 55.0
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.6e-50 203.4 190 56.8
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 2.2e-50 203.0 146 66.4
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 6.3e-50 201.4 162 64.2
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 6.3e-50 201.4 174 60.3
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 8.2e-50 201.1 177 57.6
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 1.1e-49 200.7 179 57.5
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 1.4e-49 200.3 180 57.2
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 3.1e-49 199.1 144 67.4
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 5.3e-49 198.4 181 56.9
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 5.3e-49 198.4 178 57.9
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 5.3e-49 198.4 164 63.4
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 6.9e-49 198.0 188 53.7
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 9.0e-49 197.6 193 56.0
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 9.0e-49 197.6 191 58.1
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 4.5e-48 195.3 180 55.6
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 1.0e-47 194.1 191 58.1
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 2.2e-47 193.0 158 58.9
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 8.5e-47 191.0 179 54.7
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 8.5e-47 191.0 182 56.0
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 1.9e-46 189.9 179 55.9
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.2e-45 187.2 137 67.2
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 3.6e-45 185.7 221 49.8
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.5e-43 180.3 163 60.1
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.5e-43 180.3 169 58.6
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 4.3e-43 178.7 143 62.2
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 4.1e-41 172.2 119 69.7
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 4.5e-40 168.7 188 53.7
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 7.7e-40 167.9 198 46.0
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 1.0e-39 167.5 147 59.9
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.7e-39 166.8 188 49.5
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 1.7e-39 166.8 184 49.5
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 8.5e-39 164.5 183 53.0
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 5.5e-38 161.8 178 49.4
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 1.2e-37 160.6 123 66.7
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 1.8e-36 156.8 202 47.0
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 2.3e-36 156.4 165 52.7
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 8.8e-36 154.5 138 58.0
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.5e-35 153.7 173 50.9
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 1.3e-34 150.6 135 58.5
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 1.7e-34 150.2 137 57.7
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 3.7e-34 149.1 182 50.0
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 3.7e-34 149.1 182 50.0
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 3.1e-33 146.0 161 50.3
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 6.5e-31 138.3 126 59.5
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 7.2e-30 134.8 127 59.1
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 4.7e-29 132.1 141 52.5
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 6.1e-29 131.7 109 62.4
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 2.6e-27 126.3 122 59.0
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 1.4e-25 120.6 113 54.0
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 1.2e-24 117.5 118 53.4
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.3e-23 114.0 79 67.1
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 1.7e-23 113.6 199 36.2
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 2.9e-23 112.8 93 59.1
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 2.5e-22 109.8 178 37.1
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 8.8e-20 101.3 94 56.4
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 1.3e-15 87.4 73 61.6
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 2.9e-15 86.3 80 57.5
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 3.2e-14 82.8 72 62.5
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 2.0e-11 73.6 68 52.9
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 3.7e-10 69.3 96 47.9
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 4.9e-10 68.9 172 34.9
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 4.5e-08 62.4 44 61.4
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 2.5e-06 56.6 94 35.1


User provided reference genes

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