Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 3.5e-124 448.4 234 100.0
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 7.1e-61 238.0 236 62.7
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 1.2e-55 220.7 243 56.0
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 1.0e-54 217.6 243 55.6
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.9e-53 213.4 240 57.9
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 7.2e-53 211.5 233 57.1
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 9.3e-53 211.1 248 55.6
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.2e-52 210.7 232 55.6
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.2e-52 210.7 236 57.2
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 1.6e-52 210.3 239 59.4
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 2.7e-52 209.5 235 58.3
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 3.6e-52 209.1 240 53.8
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 1.8e-51 206.8 237 55.7
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 2.3e-51 206.5 240 55.0
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 3.9e-51 205.7 245 53.5
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 5.1e-51 205.3 245 55.1
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 6.7e-51 204.9 239 52.7
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 6.7e-51 204.9 240 56.7
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 8.7e-51 204.5 237 53.6
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 1.5e-50 203.8 234 57.3
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 1.5e-50 203.8 232 54.7
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 7.4e-50 201.4 235 57.0
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 8.2e-49 198.0 254 52.8
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.1e-48 197.6 243 52.7
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 2.4e-48 196.4 262 51.1
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 2.4e-48 196.4 260 50.4
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 3.1e-48 196.1 237 53.6
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 4.1e-48 195.7 236 52.5
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 4.1e-48 195.7 255 51.8
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 5.3e-48 195.3 247 51.0
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 1.2e-47 194.1 250 49.2
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 3.4e-47 192.6 242 55.0
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 5.9e-47 191.8 238 54.2
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 7.7e-47 191.4 234 55.6
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.3e-46 190.7 264 51.1
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 1.7e-46 190.3 251 52.2
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 1.7e-46 190.3 243 50.2
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 3.8e-46 189.1 239 52.3
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 5.0e-46 188.7 234 53.0
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 1.4e-45 187.2 238 55.0
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 1.4e-45 187.2 183 62.3
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 1.9e-45 186.8 252 52.8
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 4.2e-45 185.7 239 51.0
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 4.2e-45 185.7 261 47.9
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 5.5e-45 185.3 260 49.6
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 7.2e-45 184.9 254 53.1
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 1.6e-44 183.7 239 52.3
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 1.6e-44 183.7 258 48.4
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 2.7e-44 183.0 244 50.4
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 2.7e-44 183.0 245 50.6
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 3.6e-44 182.6 244 48.0
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 1.0e-43 181.0 262 48.5
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.4e-43 180.6 252 52.8
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 1.8e-43 180.3 244 50.4
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 3.0e-43 179.5 227 52.4
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 1.5e-42 177.2 247 51.8
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 1.5e-42 177.2 243 49.8
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 2.6e-42 176.4 241 50.2
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 4.4e-42 175.6 243 49.4
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 5.7e-42 175.3 248 49.2
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 7.4e-42 174.9 254 49.2
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 1.3e-41 174.1 253 46.6
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 3.7e-41 172.6 224 50.9
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 6.3e-41 171.8 243 44.9
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 8.2e-41 171.4 255 49.0
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 2.4e-40 169.9 238 50.0
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 3.1e-40 169.5 251 46.6
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 6.9e-40 168.3 258 48.1
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 6.9e-40 168.3 228 50.4
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 1.2e-39 167.5 256 47.7
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 1.2e-39 167.5 236 45.8
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.5e-39 167.2 282 42.6
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 2.6e-39 166.4 268 46.3
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 2.6e-39 166.4 233 48.9
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 4.5e-39 165.6 239 51.0
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 6.5e-38 161.8 243 46.9
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 6.5e-38 161.8 169 54.4
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 1.4e-37 160.6 239 45.6
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 1.2e-36 157.5 241 48.5
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 6.1e-36 155.2 255 45.5
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 1.0e-35 154.5 245 46.9
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.0e-35 152.9 243 46.9
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.9e-35 152.5 243 46.5
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 3.9e-35 152.5 238 46.2
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 1.1e-34 151.0 247 47.0
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.0e-34 150.2 243 46.5
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 7.4e-34 148.3 245 46.9
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 1.8e-32 143.7 164 56.7
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 9.1e-32 141.4 252 42.1
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 2.6e-31 139.8 237 41.4
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 2.6e-31 139.8 237 43.5
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.5e-31 139.0 237 41.4
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 5.9e-31 138.7 236 40.7
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 1.0e-30 137.9 239 43.1
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 6.5e-30 135.2 235 48.5
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 1.1e-29 134.4 238 45.4
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 7.2e-29 131.7 241 39.4
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 9.4e-29 131.3 240 43.3
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 1.6e-28 130.6 241 41.1
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 2.7e-28 129.8 259 41.3
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 3.6e-28 129.4 245 42.4
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 3.6e-28 129.4 241 39.0
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 3.6e-28 129.4 249 39.8
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 6.1e-28 128.6 249 39.8
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 6.1e-28 128.6 249 39.8
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 8.0e-28 128.3 248 39.9
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 8.0e-28 128.3 248 39.9
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 1.4e-27 127.5 246 37.8
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 4.0e-27 125.9 243 41.2
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 6.7e-27 125.2 259 41.7
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 2.0e-26 123.6 235 40.9
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 4.4e-26 122.5 180 45.6
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 5.7e-26 122.1 178 51.7
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 9.7e-26 121.3 259 38.6
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 1.7e-25 120.6 252 38.1
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 2.8e-25 119.8 258 37.6
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 4.8e-25 119.0 251 38.6
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 6.3e-25 118.6 260 38.5
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.1e-24 117.9 250 37.6
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 1.1e-24 117.9 238 36.6
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.1e-24 117.9 252 39.3
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 1.4e-24 117.5 238 36.6
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 1.4e-24 117.5 238 36.6
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 1.8e-24 117.1 197 46.7
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 3.1e-24 116.3 241 36.5
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 3.1e-24 116.3 219 41.1
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 5.3e-24 115.5 253 39.5
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 7.0e-24 115.2 259 36.7
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 9.1e-24 114.8 248 37.5
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 9.1e-24 114.8 253 39.5
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 5.9e-23 112.1 248 39.1
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 5.9e-23 112.1 248 39.1
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 5.9e-23 112.1 248 39.1
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 5.9e-23 112.1 247 37.2
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 5.9e-23 112.1 190 42.1
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 3.8e-22 109.4 256 38.7
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 6.5e-22 108.6 186 44.6
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 1.5e-21 107.5 248 41.1
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 2.5e-21 106.7 186 44.1
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.2e-21 105.9 237 38.0
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 7.2e-21 105.1 237 38.0
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 9.4e-21 104.8 187 43.3
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 1.2e-20 104.4 236 37.3
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 2.7e-20 103.2 249 35.7
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.7e-20 103.2 238 37.8
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 3.0e-19 99.8 178 42.1
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 4.0e-19 99.4 136 48.5
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 1.2e-15 87.8 251 34.7
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 3.5e-15 86.3 170 37.6
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 8.6e-14 81.6 97 56.7
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 7.2e-13 78.6 243 33.3
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 9.5e-13 78.2 151 42.4
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 1.6e-12 77.4 222 33.8
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.1e-12 77.0 154 38.3
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 6.8e-11 72.0 84 56.0
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 8.8e-11 71.6 197 31.5
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 3.4e-10 69.7 78 48.7
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 1.3e-09 67.8 78 53.8
Nn1g03499 Nelumbo nucifera HOM05D004369 ORTHO05D004907 5.4e-08 62.4 87 50.6
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 1.3e-06 57.8 84 45.2
Zm00001eb405310 Zea mays HOM05D015271 ORTHO05D004907 8.6e-06 55.1 81 43.2


User provided reference genes

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