Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g08890 Coffea canephora HOM05D006942 ORTHO05D008737 1.3e-160 569.7 292 100.0
Peaxi162Scf00076g01036 Petunia axillaris HOM05D006942 ORTHO05D008737 2.4e-98 362.8 307 62.9
MSTRG.19939 Avicennia marina HOM05D006942 ORTHO05D008737 5.5e-95 351.7 296 64.5
Potri.013G059500 Populus trichocarpa HOM05D006942 ORTHO05D008737 1.2e-94 350.5 294 63.3
Manes.08G149200 Manihot esculenta HOM05D006942 ORTHO05D008737 4.0e-93 345.5 296 64.5
FAN21G2944 Fragaria x ananassa HOM05D006942 ORTHO05D008737 1.3e-91 340.5 305 60.3
TAR633G0669 Trochodendron aralioides HOM05D006942 ORTHO05D008737 1.7e-91 340.1 291 63.6
GSVIVG01033386001 Vitis vinifera HOM05D006942 ORTHO05D008737 1.7e-91 340.1 187 85.0
Atru.chr2.1323 Acer truncatum HOM05D006942 ORTHO05D008737 6.3e-91 338.2 288 63.5
Nn7g35832 Nelumbo nucifera HOM05D006942 ORTHO05D008737 1.4e-90 337.0 298 62.1
Duzib177G1195 Durio zibethinus HOM05D006942 ORTHO05D008737 1.8e-90 336.7 304 62.2
TWI34G0045 Tripterygium wilfordii HOM05D006942 ORTHO05D008737 7.0e-90 334.7 293 62.5
CsaV3_3G043400 Cucumis sativus L. HOM05D006942 ORTHO05D008737 1.2e-89 334.0 186 83.3
COL.COLO4_13617 Corchorus olitorius HOM05D006942 ORTHO05D008737 1.6e-89 333.6 301 61.1
FvH4_3g25250 Fragaria vesca HOM05D006942 ORTHO05D008737 2.7e-89 332.8 304 59.9
MBI11_g05460_MAGBIO Magnolia biondii HOM05D006942 ORTHO05D008737 2.7e-89 332.8 292 60.6
Nn2g15884 Nelumbo nucifera HOM05D002140 ORTHO05D008737 2.7e-89 332.8 299 61.5
Thecc.05G293100 Theobroma cacao HOM05D006942 ORTHO05D008737 3.5e-89 332.4 300 60.7
RcHm_v2.0_Chr5g0046891 Rosa chinensis HOM05D006942 ORTHO05D008737 4.5e-89 332.0 307 59.0
Sed0013150 Sechium edule HOM05D006942 ORTHO05D008737 5.9e-89 331.6 186 82.8
MELO3C026901.2 Cucumis melo HOM05D006942 ORTHO05D008737 1.0e-88 330.9 287 61.3
FAN16G3006 Fragaria x ananassa HOM05D006942 ORTHO05D008737 1.0e-88 330.9 304 58.9
Rhsim04G0087000 Rhododendron simsii HOM05D006942 ORTHO05D008737 1.0e-88 330.9 294 59.5
vmacro09146 Vaccinium macrocarpon HOM05D006942 ORTHO05D008737 1.0e-88 330.9 294 59.9
QL07p020181 Quercus lobata HOM05D006942 ORTHO05D008737 1.7e-88 330.1 184 83.7
Sed0025081 Sechium edule HOM05D006942 ORTHO05D008737 3.8e-88 328.9 244 68.9
ClCG10G013230 Citrullus lanatus HOM05D006942 ORTHO05D008737 5.0e-88 328.6 287 61.0
CARHR028870 Cardamine hirsuta HOM05D006942 ORTHO05D008737 8.5e-88 327.8 293 60.1
Gorai.013G123100 Gossypium raimondii HOM05D006942 ORTHO05D008737 1.1e-87 327.4 300 59.0
Gohir.D13G109500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 1.5e-87 327.0 300 59.0
Sabra19G0041400 Salix brachista HOM05D006942 ORTHO05D008737 1.5e-87 327.0 291 62.2
SpUn0001_1050 Schrenkiella parvula HOM05D006942 ORTHO05D008737 1.5e-87 327.0 290 59.3
PSO339G1210 Papaver somniferum HOM05D006942 ORTHO05D008737 1.9e-87 326.6 191 81.2
THA.LOC104823787 Tarenaya hassleriana HOM05D006942 ORTHO05D008737 1.9e-87 326.6 307 57.7
Gorai.007G287900 Gossypium raimondii HOM05D006942 ORTHO05D008737 3.2e-87 325.9 294 59.5
BcaC04g22009 Brassica carinata HOM05D006942 ORTHO05D008737 4.2e-87 325.5 194 77.8
A09p19530 Brassica napus HOM05D006942 ORTHO05D008737 4.2e-87 325.5 194 77.8
C09p24900 Brassica napus HOM05D006942 ORTHO05D008737 4.2e-87 325.5 194 77.8
BolC9t55381H Brassica oleracea HOM05D006942 ORTHO05D008737 4.2e-87 325.5 194 77.8
Cpa.g.sc51.94 Carica papaya HOM05D006942 ORTHO05D008737 4.2e-87 325.5 306 58.2
Migut.J01895 Erythranthe guttata HOM05D006942 ORTHO05D008737 5.5e-87 325.1 202 79.2
PGR042G3330 Punica granatum HOM05D006942 ORTHO05D008737 5.5e-87 325.1 247 64.0
MD12G1002500 Malus domestica HOM05D006942 ORTHO05D008737 7.2e-87 324.7 197 78.7
Eucgr.A02087 Eucalyptus grandis HOM05D006942 ORTHO05D008737 2.7e-86 322.8 187 81.3
SGA_v2.0_scaffold50G18512 Striga asiatica HOM05D006942 ORTHO05D008737 2.7e-86 322.8 200 78.5
DCAR_019882 Daucus carota HOM05D006942 ORTHO05D008737 2.3e-85 319.7 287 61.7
Lj1g0019871 Lotus japonicus HOM05D006942 ORTHO05D008737 3.0e-85 319.3 193 80.3
DCAR_009675 Daucus carota HOM05D006942 ORTHO05D008737 6.8e-85 318.2 192 76.6
ATR0697G165 Amborella trichopoda HOM05D006942 ORTHO05D008737 8.8e-85 317.8 184 79.3
CANSAT78G1082 Cannabis sativa HOM05D006942 ORTHO05D008737 8.8e-85 317.8 251 66.9
Ciclev10021582m.g Citrus clementina HOM05D006942 ORTHO05D008737 8.8e-85 317.8 293 60.1
AL1G64670 Arabidopsis lyrata HOM05D006942 ORTHO05D008737 1.2e-84 317.4 194 75.3
HanXRQChr13g0398101 Helianthus annuus HOM05D006942 ORTHO05D008737 1.5e-84 317.0 303 56.4
BcaB07g31088 Brassica carinata HOM05D006942 ORTHO05D008737 2.0e-84 316.6 287 58.2
Carub.0002s0962 Capsella rubella HOM05D006942 ORTHO05D008737 2.0e-84 316.6 306 56.5
Aqoxy2G00557 Aquilegia oxysepala HOM05D006942 ORTHO05D008737 2.6e-84 316.2 185 78.4
Gohir.A13G105500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 2.6e-84 316.2 287 59.6
ECA233G4155 Erigeron canadensis HOM05D006942 ORTHO05D008737 3.4e-84 315.8 227 67.8
Aa31LG2G1990 Aethionema arabicum HOM05D006942 ORTHO05D008737 9.8e-84 314.3 305 56.1
Eucgr.K01480 Eucalyptus grandis HOM05D006942 ORTHO05D008737 1.3e-83 313.9 215 69.3
AT2G23840 Arabidopsis thaliana HOM05D006942 ORTHO05D008737 4.9e-83 312.0 298 55.7
Lalb_Chr24g0403081 Lupinus albus HOM05D006942 ORTHO05D008737 1.1e-82 310.8 194 77.8
VMungo1383G0897 Vigna mungo HOM05D006942 ORTHO05D008737 1.4e-82 310.5 182 81.3
Thhalv10008350m.g Eutrema salsugineum HOM05D006942 ORTHO05D008737 2.4e-82 309.7 187 76.5
CDE10G0368 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 4.1e-82 308.9 204 72.5
Glyma.16G042200 Glycine max HOM05D006942 ORTHO05D008737 4.1e-82 308.9 294 58.2
Phvul.001G109600 Phaseolus vulgaris HOM05D006942 ORTHO05D008737 5.4e-82 308.5 302 57.0
Lsat_1_v5_gn_6_36781 Lactuca sativa HOM05D006942 ORTHO05D008737 7.0e-82 308.1 299 57.2
arahy.Tifrunner.gnm1.ann1.0W916P Arachis hypogaea HOM05D006942 ORTHO05D008737 1.6e-81 307.0 181 80.7
HPP92_018642 Vanilla planifolia HOM05D006942 ORTHO05D008737 2.7e-81 306.2 183 75.4
Medtr7g085420 Medicago truncatula HOM05D006942 ORTHO05D008737 3.5e-81 305.8 262 61.8
Glyma.19G110300 Glycine max HOM05D006942 ORTHO05D008737 4.5e-81 305.4 303 57.4
TPR.G5873 Trifolium pratense HOM05D006942 ORTHO05D008737 4.5e-81 305.4 181 79.0
TAR623G0107 Trochodendron aralioides HOM05D002140 ORTHO05D002382 6.6e-80 301.6 210 72.4
Psat3g089160 Pisum sativum HOM05D006942 ORTHO05D008737 3.3e-79 299.3 193 74.1
Haze_19409 Corylus avellana HOM05D006942 ORTHO05D008737 1.0e-77 294.3 324 52.2
CDE06G2457 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 3.4e-76 289.3 213 66.2
PGR142G1268 Punica granatum HOM05D006942 ORTHO05D008737 1.1e-74 284.3 189 70.9
Lalb_Chr06g0173931 Lupinus albus HOM05D006942 ORTHO05D008737 1.4e-74 283.9 228 63.2
EL10Ac3g06808 Beta vulgaris HOM05D006942 ORTHO05D008737 4.1e-74 282.3 241 58.5
Os07g0170200 Oryza sativa ssp. japonica HOM05D006942 ORTHO05D008737 1.0e-72 277.7 166 78.3
CiPaw.09G001300 Carya illinoinensis HOM05D006942 ORTHO05D008737 3.3e-71 272.7 156 81.4
Sabra13G0052800 Salix brachista HOM05D006942 ORTHO05D008737 7.3e-71 271.6 161 80.1
Prupe.7G002400 Prunus persica HOM05D006942 ORTHO05D008737 2.3e-69 266.5 165 76.4
Sc13g0007650 Simmondsia chinensis HOM05D006942 ORTHO05D008737 1.2e-68 264.2 173 72.8
Gohir.D11G268200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 7.5e-68 261.5 294 51.0
Lj2A357G77 Lonicera japonica HOM05D006942 ORTHO05D008737 4.9e-67 258.8 156 80.8
AUR62032674 Chenopodium quinoa HOM05D006942 ORTHO05D008737 1.4e-66 257.3 170 70.0
CSS0046453 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 5.4e-66 255.4 285 51.2
Actinidia38618 Actinidia chinensis HOM05D006942 ORTHO05D008737 7.8e-65 251.5 179 69.8
Nitab4.5_0000911g0030 Nicotiana tabacum HOM05D006942 ORTHO05D008737 3.0e-64 249.6 227 59.5
Ca_08258_v3 Cicer arietinum L. HOM05D006942 ORTHO05D008737 1.2e-60 237.7 148 77.0
Manes.09G142700 Manihot esculenta HOM05D006942 ORTHO05D008737 5.8e-60 235.3 230 59.6
AUR62032073 Chenopodium quinoa HOM05D006942 ORTHO05D008737 3.2e-58 229.6 164 66.5
AagrBONN_evm.TU.Sc2ySwM_344.2088 Anthoceros agrestis HOM05D006942 ORTHO05D008737 3.3e-55 219.5 192 54.7
Duzib128G0620 Durio zibethinus HOM05D006942 ORTHO05D008737 1.6e-54 217.2 158 66.5
Pp3c12_13900 Physcomitrium patens HOM05D006942 ORTHO05D008737 8.1e-54 214.9 191 53.9
Pp3c4_7620 Physcomitrium patens HOM05D006942 ORTHO05D008737 1.8e-53 213.8 191 55.0
Mapoly0043s0076 Marchantia polymorpha HOM05D006942 ORTHO05D008737 3.1e-53 213.0 205 49.8
unitig_85.g27430 Utricularia gibba HOM05D006942 ORTHO05D008737 1.6e-49 200.7 146 69.9
arahy.Tifrunner.gnm1.ann1.T4HPZA Arachis hypogaea HOM05D006942 ORTHO05D008737 2.7e-49 199.9 248 49.2
Ah.04g153240 Amaranthus hybridus HOM05D000653 ORTHO05D003117 2.3e-48 196.8 176 59.1
SMO364G0530 Selaginella moellendorffii HOM05D006942 ORTHO05D008737 3.9e-48 196.1 186 48.9
Oeu048436.1 Olea europaea HOM05D006942 ORTHO05D008737 8.1e-46 188.3 201 53.7
Potri.019G033200 Populus trichocarpa HOM05D006942 ORTHO05D008737 8.9e-45 184.9 289 41.9
Hund24842 Selenicereus undatus HOM05D006942 ORTHO05D008737 3.8e-43 179.5 313 37.4
CBR_g603 Chara braunii HOM05D006942 ORTHO05D008737 5.6e-39 165.6 207 43.5
Actinidia17307 Actinidia chinensis HOM05D006942 ORTHO05D008737 1.1e-37 161.4 112 69.6
PRCOL_00006758 Prasinoderma coloniale HOM05D006942 ORTHO05D008737 1.4e-34 151.0 201 41.3
SalBow2G1960 Salvia bowleyana HOM05D006942 ORTHO05D008737 2.4e-34 150.2 112 64.3
Gohir.A11G258200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 4.2e-34 149.4 294 36.7
Cre04.g217903 Chlamydomonas reinhardtii HOM05D006942 ORTHO05D008737 2.5e-31 140.2 176 42.6
SEGI_36650 Sequoiadendron giganteum HOM05D006942 ORTHO05D008737 1.1e-21 108.2 95 60.0
Nitab4.5_0000001g0050 Nicotiana tabacum HOM05D006942 ORTHO05D008737 3.2e-10 70.1 129 37.2
Zm00001eb300960 Zea mays HOM05D006942 ORTHO05D008737 2.1e-09 67.4 49 63.3
Pp3s30_1160 Physcomitrium patens HOM05D006942 ORTHO05D317230 3.7e-06 56.6 62 38.7


User provided reference genes

Program Settings